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Whole-exome sequencing of tumor samples

Whole exome sequencing of DNA samples from tumor samples of patients in the Neo-Pembro trial. For each patient, up to four samples were sequenced; one tumor biopsy at baseline, one tumor biopsy after induction chemotherapy, a tumor sample from resection material at cytoreductive surgery, and a reference normal DNA sample isolated from whole blood. DNA was obtained from fresh-frozen samples where possible, or formalin-fixed paraffin-embedded when no fresh-frozen sample was available.

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Netherlands Cancer Institute - Antoni van Leeuwenhoek (NKI-AVL) general policy

Data is available under reasonable request. All data requests will be reviewed by the NKI IRB and must be supported by the Principal Investigator of the study. The researcher will need to sign a data access agreement with the NKI after approval.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000000781 Exome Sequencing

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF50000276878 fastq.gz 7.6 GB
EGAF50000276879 fastq.gz 7.9 GB
EGAF50000276880 fastq.gz 5.1 GB
EGAF50000276881 fastq.gz 5.3 GB
EGAF50000276882 fastq.gz 5.0 GB
EGAF50000276883 fastq.gz 5.2 GB
EGAF50000276884 fastq.gz 4.6 GB
EGAF50000276885 fastq.gz 4.8 GB
EGAF50000276886 fastq.gz 5.2 GB
EGAF50000276887 fastq.gz 5.4 GB
EGAF50000276888 fastq.gz 10.8 GB
EGAF50000276889 fastq.gz 10.8 GB
EGAF50000277010 fastq.gz 7.0 GB
EGAF50000277011 fastq.gz 7.1 GB
EGAF50000277012 fastq.gz 9.1 GB
EGAF50000277013 fastq.gz 9.6 GB
EGAF50000277014 fastq.gz 12.9 GB
EGAF50000277015 fastq.gz 12.3 GB
EGAF50000277016 fastq.gz 8.4 GB
EGAF50000277017 fastq.gz 8.8 GB
EGAF50000277018 fastq.gz 9.5 GB
EGAF50000277019 fastq.gz 9.9 GB
EGAF50000277020 fastq.gz 10.9 GB
EGAF50000277021 fastq.gz 11.5 GB
EGAF50000277022 fastq.gz 8.8 GB
EGAF50000277023 fastq.gz 9.2 GB
EGAF50000277024 fastq.gz 9.3 GB
EGAF50000277025 fastq.gz 9.7 GB
EGAF50000277026 fastq.gz 8.1 GB
EGAF50000277027 fastq.gz 7.8 GB
EGAF50000277028 fastq.gz 9.7 GB
EGAF50000277029 fastq.gz 9.2 GB
EGAF50000277030 fastq.gz 7.4 GB
EGAF50000277031 fastq.gz 7.1 GB
EGAF50000277032 fastq.gz 7.8 GB
EGAF50000277033 fastq.gz 7.5 GB
EGAF50000277034 fastq.gz 7.6 GB
EGAF50000277035 fastq.gz 7.8 GB
EGAF50000277036 fastq.gz 7.0 GB
EGAF50000277037 fastq.gz 7.2 GB
EGAF50000277038 fastq.gz 3.7 GB
EGAF50000277039 fastq.gz 3.7 GB
EGAF50000277040 fastq.gz 7.9 GB
EGAF50000277041 fastq.gz 8.0 GB
EGAF50000277042 fastq.gz 8.5 GB
EGAF50000277043 fastq.gz 8.6 GB
EGAF50000277044 fastq.gz 7.6 GB
EGAF50000277045 fastq.gz 7.5 GB
EGAF50000277046 fastq.gz 14.8 GB
EGAF50000277047 fastq.gz 15.0 GB
EGAF50000277048 fastq.gz 11.1 GB
EGAF50000277049 fastq.gz 11.5 GB
EGAF50000277050 fastq.gz 8.3 GB
EGAF50000277051 fastq.gz 8.7 GB
EGAF50000277052 fastq.gz 8.4 GB
EGAF50000277053 fastq.gz 8.1 GB
EGAF50000277054 fastq.gz 10.0 GB
EGAF50000277055 fastq.gz 10.4 GB
EGAF50000277056 fastq.gz 12.8 GB
EGAF50000277057 fastq.gz 13.3 GB
EGAF50000277058 fastq.gz 7.0 GB
EGAF50000277059 fastq.gz 7.4 GB
EGAF50000277060 fastq.gz 7.5 GB
EGAF50000277061 fastq.gz 7.8 GB
EGAF50000277062 fastq.gz 6.9 GB
EGAF50000277063 fastq.gz 6.6 GB
EGAF50000277064 fastq.gz 7.8 GB
EGAF50000277065 fastq.gz 8.1 GB
EGAF50000277066 fastq.gz 8.6 GB
EGAF50000277067 fastq.gz 8.9 GB
EGAF50000277068 fastq.gz 9.5 GB
EGAF50000277069 fastq.gz 9.9 GB
EGAF50000277070 fastq.gz 7.0 GB
EGAF50000277071 fastq.gz 7.3 GB
EGAF50000277072 fastq.gz 8.7 GB
EGAF50000277073 fastq.gz 9.0 GB
EGAF50000277074 fastq.gz 9.0 GB
EGAF50000277075 fastq.gz 9.5 GB
EGAF50000277076 fastq.gz 9.2 GB
EGAF50000277077 fastq.gz 9.7 GB
EGAF50000277078 fastq.gz 8.8 GB
EGAF50000277079 fastq.gz 8.4 GB
EGAF50000277080 fastq.gz 7.5 GB
EGAF50000277081 fastq.gz 7.2 GB
EGAF50000277082 fastq.gz 9.6 GB
EGAF50000277083 fastq.gz 9.2 GB
EGAF50000277084 fastq.gz 8.9 GB
EGAF50000277085 fastq.gz 9.2 GB
EGAF50000277086 fastq.gz 7.5 GB
EGAF50000277087 fastq.gz 7.2 GB
EGAF50000277088 fastq.gz 7.9 GB
EGAF50000277089 fastq.gz 8.3 GB
EGAF50000277090 fastq.gz 5.8 GB
EGAF50000277091 fastq.gz 5.9 GB
EGAF50000277092 fastq.gz 5.6 GB
EGAF50000277093 fastq.gz 5.6 GB
EGAF50000277094 fastq.gz 11.5 GB
EGAF50000277095 fastq.gz 11.5 GB
EGAF50000277096 fastq.gz 7.7 GB
EGAF50000277097 fastq.gz 8.0 GB
EGAF50000277098 fastq.gz 11.7 GB
EGAF50000277099 fastq.gz 11.8 GB
EGAF50000277100 fastq.gz 7.8 GB
EGAF50000277101 fastq.gz 7.9 GB
EGAF50000277102 fastq.gz 7.5 GB
EGAF50000277103 fastq.gz 7.9 GB
EGAF50000277104 fastq.gz 6.7 GB
EGAF50000277105 fastq.gz 7.0 GB
EGAF50000277106 fastq.gz 7.6 GB
EGAF50000277107 fastq.gz 7.9 GB
EGAF50000277108 fastq.gz 7.3 GB
EGAF50000277109 fastq.gz 7.6 GB
EGAF50000277110 fastq.gz 8.6 GB
EGAF50000277111 fastq.gz 8.3 GB
EGAF50000277112 fastq.gz 7.7 GB
EGAF50000277113 fastq.gz 8.0 GB
EGAF50000277114 fastq.gz 8.9 GB
EGAF50000277115 fastq.gz 8.6 GB
EGAF50000277116 fastq.gz 11.3 GB
EGAF50000277117 fastq.gz 10.7 GB
EGAF50000277118 fastq.gz 7.8 GB
EGAF50000277119 fastq.gz 8.1 GB
EGAF50000277120 fastq.gz 3.7 GB
EGAF50000277121 fastq.gz 3.9 GB
EGAF50000277122 fastq.gz 4.8 GB
EGAF50000277123 fastq.gz 4.6 GB
EGAF50000277124 fastq.gz 5.0 GB
EGAF50000277125 fastq.gz 4.8 GB
EGAF50000277126 fastq.gz 4.7 GB
EGAF50000277127 fastq.gz 4.4 GB
EGAF50000277128 fastq.gz 4.5 GB
EGAF50000277129 fastq.gz 4.7 GB
EGAF50000277130 fastq.gz 3.8 GB
EGAF50000277131 fastq.gz 4.0 GB
EGAF50000277132 fastq.gz 4.2 GB
EGAF50000277133 fastq.gz 4.4 GB
EGAF50000277134 fastq.gz 4.2 GB
EGAF50000277135 fastq.gz 4.4 GB
EGAF50000277136 fastq.gz 4.2 GB
EGAF50000277137 fastq.gz 4.4 GB
EGAF50000277138 fastq.gz 4.8 GB
EGAF50000277139 fastq.gz 3.6 GB
EGAF50000277140 fastq.gz 8.5 GB
EGAF50000277141 fastq.gz 8.1 GB
EGAF50000277142 fastq.gz 5.0 GB
EGAF50000277143 fastq.gz 4.8 GB
EGAF50000277144 fastq.gz 4.2 GB
EGAF50000277145 fastq.gz 4.4 GB
EGAF50000277146 fastq.gz 3.9 GB
EGAF50000277147 fastq.gz 4.1 GB
EGAF50000277148 fastq.gz 4.9 GB
EGAF50000277149 fastq.gz 5.2 GB
EGAF50000277150 fastq.gz 4.8 GB
EGAF50000277151 fastq.gz 5.1 GB
EGAF50000277152 fastq.gz 4.1 GB
EGAF50000277153 fastq.gz 4.4 GB
EGAF50000277154 fastq.gz 3.8 GB
EGAF50000277155 fastq.gz 4.0 GB
EGAF50000277156 fastq.gz 3.8 GB
EGAF50000277157 fastq.gz 4.0 GB
EGAF50000277158 fastq.gz 4.5 GB
EGAF50000277159 fastq.gz 4.7 GB
EGAF50000277160 fastq.gz 9.7 GB
EGAF50000277161 fastq.gz 10.1 GB
EGAF50000277162 fastq.gz 4.0 GB
EGAF50000277163 fastq.gz 4.2 GB
EGAF50000277164 fastq.gz 4.2 GB
EGAF50000277165 fastq.gz 4.4 GB
EGAF50000277166 fastq.gz 4.6 GB
EGAF50000277167 fastq.gz 4.8 GB
EGAF50000277168 fastq.gz 4.2 GB
EGAF50000277169 fastq.gz 4.5 GB
EGAF50000277170 fastq.gz 4.0 GB
EGAF50000277171 fastq.gz 4.1 GB
EGAF50000277172 fastq.gz 5.5 GB
EGAF50000277173 fastq.gz 5.8 GB
EGAF50000277174 fastq.gz 4.3 GB
EGAF50000277175 fastq.gz 4.5 GB
EGAF50000277176 fastq.gz 4.1 GB
EGAF50000277177 fastq.gz 4.3 GB
EGAF50000277178 fastq.gz 4.1 GB
EGAF50000277179 fastq.gz 4.3 GB
EGAF50000277180 fastq.gz 4.1 GB
EGAF50000277181 fastq.gz 4.3 GB
EGAF50000277182 fastq.gz 8.0 GB
EGAF50000277183 fastq.gz 8.3 GB
EGAF50000277184 fastq.gz 7.2 GB
EGAF50000277185 fastq.gz 7.3 GB
EGAF50000277186 fastq.gz 9.9 GB
EGAF50000277187 fastq.gz 10.0 GB
EGAF50000277188 fastq.gz 9.8 GB
EGAF50000277189 fastq.gz 9.9 GB
EGAF50000277190 fastq.gz 7.0 GB
EGAF50000277191 fastq.gz 7.2 GB
EGAF50000277192 fastq.gz 9.7 GB
EGAF50000277193 fastq.gz 10.1 GB
EGAF50000277194 fastq.gz 7.9 GB
EGAF50000277195 fastq.gz 7.6 GB
EGAF50000277196 fastq.gz 9.5 GB
EGAF50000277197 fastq.gz 9.2 GB
EGAF50000277198 fastq.gz 7.9 GB
EGAF50000277199 fastq.gz 7.6 GB
EGAF50000277200 fastq.gz 9.2 GB
EGAF50000277201 fastq.gz 8.8 GB
EGAF50000277202 fastq.gz 9.3 GB
EGAF50000277203 fastq.gz 9.8 GB
206 Files (1.5 TB)