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Whole-transcriptome sequencing of tumor samples

Whole transcriptome sequencing of RNA samples from tumor samples of patients in the Neo-Pembro trial. For each patient, up to three samples were sequenced; one tumor biopsy at baseline, one tumor biopsy after induction chemotherapy, and a tumor sample from resection material at cytoreductive surgery. RNA was obtained from fresh-frozen samples where possible, or formalin-fixed paraffin-embedded when no fresh-frozen sample was available.

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Netherlands Cancer Institute - Antoni van Leeuwenhoek (NKI-AVL) general policy

Data is available under reasonable request. All data requests will be reviewed by the NKI IRB and must be supported by the Principal Investigator of the study. The researcher will need to sign a data access agreement with the NKI after approval.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000000781 Exome Sequencing

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF50000276856 fastq.gz 1.4 GB
EGAF50000276857 fastq.gz 1.4 GB
EGAF50000276858 fastq.gz 1.3 GB
EGAF50000276859 fastq.gz 1.4 GB
EGAF50000276860 fastq.gz 1.1 GB
EGAF50000276861 fastq.gz 1.1 GB
EGAF50000276862 fastq.gz 949.7 MB
EGAF50000276863 fastq.gz 963.5 MB
EGAF50000276864 fastq.gz 1.0 GB
EGAF50000276865 fastq.gz 1.0 GB
EGAF50000276866 fastq.gz 777.8 MB
EGAF50000276867 fastq.gz 775.2 MB
EGAF50000276868 fastq.gz 853.4 MB
EGAF50000276869 fastq.gz 864.2 MB
EGAF50000276870 fastq.gz 518.4 MB
EGAF50000276871 fastq.gz 520.2 MB
EGAF50000276872 fastq.gz 1.0 GB
EGAF50000276873 fastq.gz 1.1 GB
EGAF50000276874 fastq.gz 724.8 MB
EGAF50000276875 fastq.gz 733.7 MB
EGAF50000276876 fastq.gz 470.0 MB
EGAF50000276877 fastq.gz 476.4 MB
EGAF50000276890 fastq.gz 1.1 GB
EGAF50000276891 fastq.gz 1.1 GB
EGAF50000276892 fastq.gz 1.3 GB
EGAF50000276893 fastq.gz 1.3 GB
EGAF50000276894 fastq.gz 1.0 GB
EGAF50000276895 fastq.gz 1.0 GB
EGAF50000276896 fastq.gz 1.2 GB
EGAF50000276897 fastq.gz 1.2 GB
EGAF50000276898 fastq.gz 1.3 GB
EGAF50000276899 fastq.gz 1.4 GB
EGAF50000276900 fastq.gz 1.2 GB
EGAF50000276901 fastq.gz 1.2 GB
EGAF50000276902 fastq.gz 759.9 MB
EGAF50000276903 fastq.gz 770.4 MB
EGAF50000276904 fastq.gz 1.1 GB
EGAF50000276905 fastq.gz 1.1 GB
EGAF50000276906 fastq.gz 909.5 MB
EGAF50000276907 fastq.gz 895.9 MB
EGAF50000276908 fastq.gz 1.1 GB
EGAF50000276909 fastq.gz 1.2 GB
EGAF50000276910 fastq.gz 1.1 GB
EGAF50000276911 fastq.gz 1.1 GB
EGAF50000276912 fastq.gz 830.4 MB
EGAF50000276913 fastq.gz 846.5 MB
EGAF50000276914 fastq.gz 1.2 GB
EGAF50000276915 fastq.gz 1.2 GB
EGAF50000276916 fastq.gz 741.8 MB
EGAF50000276917 fastq.gz 749.1 MB
EGAF50000276918 fastq.gz 796.9 MB
EGAF50000276919 fastq.gz 807.4 MB
EGAF50000276920 fastq.gz 1.1 GB
EGAF50000276921 fastq.gz 1.0 GB
EGAF50000276922 fastq.gz 1.4 GB
EGAF50000276923 fastq.gz 1.4 GB
EGAF50000276924 fastq.gz 999.4 MB
EGAF50000276925 fastq.gz 981.8 MB
EGAF50000276926 fastq.gz 886.8 MB
EGAF50000276927 fastq.gz 869.2 MB
EGAF50000276928 fastq.gz 1.4 GB
EGAF50000276929 fastq.gz 1.3 GB
EGAF50000276930 fastq.gz 918.5 MB
EGAF50000276931 fastq.gz 902.4 MB
EGAF50000276932 fastq.gz 961.2 MB
EGAF50000276933 fastq.gz 975.0 MB
EGAF50000276934 fastq.gz 949.2 MB
EGAF50000276935 fastq.gz 961.7 MB
EGAF50000276936 fastq.gz 1.1 GB
EGAF50000276937 fastq.gz 1.1 GB
EGAF50000276938 fastq.gz 1.1 GB
EGAF50000276939 fastq.gz 1.1 GB
EGAF50000276940 fastq.gz 974.3 MB
EGAF50000276941 fastq.gz 987.8 MB
EGAF50000276942 fastq.gz 1.2 GB
EGAF50000276943 fastq.gz 1.2 GB
EGAF50000276944 fastq.gz 816.5 MB
EGAF50000276945 fastq.gz 833.4 MB
EGAF50000276946 fastq.gz 1.3 GB
EGAF50000276947 fastq.gz 1.3 GB
EGAF50000276948 fastq.gz 922.3 MB
EGAF50000276949 fastq.gz 940.9 MB
EGAF50000276950 fastq.gz 866.5 MB
EGAF50000276951 fastq.gz 891.4 MB
EGAF50000276952 fastq.gz 1.3 GB
EGAF50000276953 fastq.gz 1.4 GB
EGAF50000276954 fastq.gz 1.1 GB
EGAF50000276955 fastq.gz 1.1 GB
EGAF50000276956 fastq.gz 1.3 GB
EGAF50000276957 fastq.gz 1.3 GB
EGAF50000276958 fastq.gz 1.3 GB
EGAF50000276959 fastq.gz 1.3 GB
EGAF50000276960 fastq.gz 947.4 MB
EGAF50000276961 fastq.gz 970.3 MB
EGAF50000276962 fastq.gz 1.1 GB
EGAF50000276963 fastq.gz 1.1 GB
EGAF50000276964 fastq.gz 847.6 MB
EGAF50000276965 fastq.gz 832.1 MB
EGAF50000276966 fastq.gz 1.4 GB
EGAF50000276967 fastq.gz 1.4 GB
EGAF50000276968 fastq.gz 912.4 MB
EGAF50000276969 fastq.gz 930.7 MB
EGAF50000276970 fastq.gz 1.4 GB
EGAF50000276971 fastq.gz 1.4 GB
EGAF50000276972 fastq.gz 837.2 MB
EGAF50000276973 fastq.gz 852.2 MB
EGAF50000276974 fastq.gz 1.0 GB
EGAF50000276975 fastq.gz 1.0 GB
EGAF50000276976 fastq.gz 925.4 MB
EGAF50000276977 fastq.gz 946.7 MB
EGAF50000276978 fastq.gz 1.1 GB
EGAF50000276979 fastq.gz 1.2 GB
EGAF50000276980 fastq.gz 974.1 MB
EGAF50000276981 fastq.gz 990.5 MB
EGAF50000276982 fastq.gz 1.4 GB
EGAF50000276983 fastq.gz 1.4 GB
EGAF50000276984 fastq.gz 679.4 MB
EGAF50000276985 fastq.gz 685.7 MB
EGAF50000276986 fastq.gz 1.2 GB
EGAF50000276987 fastq.gz 1.2 GB
EGAF50000276988 fastq.gz 1.2 GB
EGAF50000276989 fastq.gz 1.2 GB
EGAF50000276990 fastq.gz 926.5 MB
EGAF50000276991 fastq.gz 934.7 MB
EGAF50000276992 fastq.gz 1.1 GB
EGAF50000276993 fastq.gz 1.1 GB
EGAF50000276994 fastq.gz 817.9 MB
EGAF50000276995 fastq.gz 827.9 MB
EGAF50000276996 fastq.gz 818.6 MB
EGAF50000276997 fastq.gz 835.8 MB
EGAF50000276998 fastq.gz 749.3 MB
EGAF50000276999 fastq.gz 755.8 MB
EGAF50000277000 fastq.gz 1.0 GB
EGAF50000277001 fastq.gz 1.0 GB
EGAF50000277002 fastq.gz 790.6 MB
EGAF50000277003 fastq.gz 802.6 MB
EGAF50000277004 fastq.gz 1.2 GB
EGAF50000277005 fastq.gz 1.3 GB
EGAF50000277006 fastq.gz 1.1 GB
EGAF50000277007 fastq.gz 1.1 GB
EGAF50000277008 fastq.gz 698.9 MB
EGAF50000277009 fastq.gz 688.4 MB
142 Files (146.6 GB)