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Whole Exome Sequencing (WES) data of PERFECT trial

Whole exome sequencing (WES) data of patients with resectable esophageal adenocarcinoma treated with neoadjuvant atezolizumab and chemoradiation (PERFECT). 78 matched samples (Tumor-Normal) from 39 patients with resectable esophageal adenocarcinoma of the PERFECT trial. Whole exome sequencing performed for mutation detection analysis.

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Data originating from patient samples

The Amsterdam UMC, tumor genome analysis core, allows access to published datasets upon written application and signature of a Data Access Agreement (DAA). In addition, applications to clinical datasets require approval by a Data Access Committee (DAC), who assess whether the proposed work is allowed given patient consent, as well as the scientific purpose. To aid this process we ask you to provide the information below. Requests will be prioritised according to novelty of the research question. Applications with insufficient detail on objectives, justification, and methods/planned analyses are unlikely to be accepted. 1.Reference number for the dataset 2.Full legal name and address of university/institution 3.Name(s) of the Principle Investigator who will use the data: 4.Name(s) and job title(s) of any other investigators who will use the data: 5.Please provide a minimum of one reference to a publication that can be found on PubMed and where the Principle Investigator is an author: 6.How will the data be stored and where will it be stored? 7.What is the proposed study title and what are the objectives and outcomes of the study in which the data will be used 8.Please provide a brief justification or rationale for the proposed study (max 250 words) 9.Please provide a brief description of planned data analyses (max 250 words): 10.Will the results arising from use of the data be used for the creation of products for sale or for any commercial purpose?

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001006504 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00008620752 bam 7.1 GB
EGAF00008620773 bam 6.6 GB
EGAF00008620787 bam 18.2 GB
EGAF00008620788 bam 6.9 GB
EGAF00008620792 bam 18.5 GB
EGAF00008620805 bam 22.6 GB
EGAF00008620808 bam 19.8 GB
EGAF00008620816 bam 19.5 GB
EGAF00008620817 bam 23.2 GB
EGAF00008620819 bam 18.5 GB
EGAF00008620820 bam 5.2 GB
EGAF00008620826 bam 7.5 GB
EGAF00008620836 bam 6.7 GB
EGAF00008620837 bam 19.7 GB
EGAF00008620838 bam 18.4 GB
EGAF00008620842 bam 21.0 GB
EGAF00008620862 bam 6.1 GB
EGAF00008620864 bam 6.8 GB
EGAF00008620869 bam 6.5 GB
EGAF00008620870 bam 6.9 GB
EGAF00008620876 bam 20.6 GB
EGAF00008620882 bam 19.6 GB
EGAF00008620883 bam 17.8 GB
EGAF00008620886 bam 5.6 GB
EGAF00008620901 bam 7.0 GB
EGAF00008620904 bam 26.8 GB
EGAF00008620935 bam 7.5 GB
EGAF00008620954 bam 23.8 GB
EGAF00008620964 bam 7.4 GB
EGAF00008620977 bam 20.4 GB
EGAF00008620985 bam 15.1 GB
EGAF00008621018 bam 24.2 GB
EGAF00008621035 bam 8.4 GB
EGAF00008621045 bam 6.9 GB
EGAF00008621124 bam 17.3 GB
EGAF00008621146 bam 21.3 GB
EGAF00008621147 bam 23.0 GB
EGAF00008621150 bam 6.2 GB
EGAF00008621155 bam 7.5 GB
EGAF00008621176 bam 21.3 GB
EGAF00008621233 bam 25.4 GB
EGAF00008621235 bam 7.1 GB
EGAF00008621253 bam 6.0 GB
EGAF00008621261 bam 20.5 GB
EGAF00008621307 bam 6.5 GB
EGAF00008621347 bam 23.4 GB
EGAF00008621354 bam 19.2 GB
EGAF00008621355 bam 8.1 GB
EGAF00008621380 bam 6.4 GB
EGAF00008621409 bam 6.6 GB
EGAF00008621463 bam 20.2 GB
EGAF00008623347 bam 6.1 GB
EGAF00008623348 bam 6.5 GB
EGAF50000277204 bam 6.5 GB
EGAF50000277205 bam 22.2 GB
EGAF50000277206 bam 23.9 GB
EGAF50000277207 bam 6.0 GB
EGAF50000277208 bam 22.2 GB
EGAF50000277209 bam 21.7 GB
EGAF50000277210 bam 21.2 GB
EGAF50000277211 bam 22.5 GB
EGAF50000277212 bam 7.4 GB
EGAF50000277213 bam 22.8 GB
EGAF50000277214 bam 22.1 GB
EGAF50000277215 bam 7.9 GB
EGAF50000277216 bam 22.4 GB
EGAF50000277217 bam 19.9 GB
EGAF50000277218 bam 5.5 GB
EGAF50000277219 bam 20.3 GB
EGAF50000277220 bam 7.3 GB
EGAF50000277221 bam 21.0 GB
EGAF50000277222 bam 19.1 GB
EGAF50000277223 bam 7.4 GB
EGAF50000277224 bam 5.5 GB
EGAF50000277225 bam 8.6 GB
EGAF50000277226 bam 19.8 GB
EGAF50000277227 bam 13.6 GB
EGAF50000277228 bam 6.3 GB
78 Files (1.1 TB)