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Genomic and Transcriptomic Data in GBM Patients Undergoing anti-PDL1 Therapy

This dataset comprises whole exome sequencing data from 29 tumor-normal pairs and RNA-seq data from 39 tumors of newly diagnosed IDH-wt GBM patients. It includes analyses such as variant calls, copy number variations, the transcriptomic expression matrix, and patient metadata and outcomes.

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MDACC GBM Data Access Agreement

DATA ACCESS AGREEMENT This Data Access Agreement (“Agreement”), effective as of the day of , 20 (“Effective Date”), is by and between The University of Texas M. D. Anderson Cancer Center, an institution of The University of Texas System and an agency of the State of Texas, with an address at 1515 Holcombe Boulevard, Houston, Texas 77030 (“Provider”), and (“Recipient”) on behalf of its investigator (“Recipient Investigator”) (collectively, the “Parties”; each, a “Party”). RECITALS Provider maintains the following de-identified data in the European Genome-phenome Archive (EGA) managed by the European Bioinformatics Institute (“Data”), and Provider is willing to allow Recipient to access such Data from the EGA for the internal noncommercial research purposes of (“Purpose”), pursuant to the terms of this Agreement. In consideration of the mutual promises and covenants herein, and for other good and valuable consideration, the receipt and sufficiency of which is hereby acknowledged, the Parties agree as follows: 1. The Data will be used solely for the Research by Recipient Investigator at Recipient, and may not be transferred to any other investigator or to any third party without prior written permission from Provider. The Material may not be used for any purpose other than the Research, including without limitation for any commercial purpose or for research in human subjects (including, without limitation, in diagnostic testing). 2. Neither Recipient nor Recipient Investigator shall disclose Data to any person or party other than the Recipient Investigator hereunder without Provider’s prior written consent. 3. The Data will be used in compliance with all applicable laws, regulations, and guidelines applicable to the Data, including without limitation any applicable export controls. 4. In any publication resulting from use of the Data, Recipient and Recipient Investigator shall acknowledge Department of Genomic Medicine (“Provider Investigator”) and Provider as the provider of the Data. 5. This Agreement shall be effective as of the Effective Date and shall remain effective until completion of the Research. Either Party may terminate this Agreement with or without cause upon thirty (30) days’ written notice to the other Party. Upon expiration or termination of this Agreement for any reason, Recipient shall destroy all Data received pursuant to this Agreement. 6. Any notice permitted or required as provided for herein shall be in writing and to the contact and address as noted below or as may be provided by either party to the other in writing from time to time. Notice to Provider shall be to: Chief Legal Officer The University of Texas M. D. Anderson Cancer Center 7007 Bertner Ave., 1MC11.3433, Suite 1674 Houston, Texas 77030 Phone: 713-745-6633; Facsimile: 713-745-6029 With a copy to: The University of Texas M. D. Anderson Cancer Center 1515 Holcombe Blvd., FCT 8.5025 Office of Research Administration Attn: Executive Director, Research Administration Houston, TX 77030 Phone: 713-792-3672; Facsimile: 713-792-7455 Notice to Recipient shall be to: [insert] 7. In the event Protected Health Information (“PHI”), as defined by the federal Health Insurance Portability and Accountability Act of 1996 (“HIPAA”), as amended, is inadvertently created, accessed by, and/or disclosed to Recipient in connection with this Agreement, Recipient will immediately notify the Provider and will return to Provider or destroy such PHI, in accordance with the Provider’s instructions. Pending return or destruction of any PHI, Recipient shall maintain the confidentiality of all Data (including the PHI) and use appropriate safeguards to prevent access to, use, or disclosure of Data (including the PHI). 8. PROVIDER MAKES NO REPRESENTATION OR WARRANTY CONCERNING THE MATERIAL, INCLUDING WITHOUT LIMITATION, WARRANTY OF MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE OR ANY OTHER WARRANTY, EXPRESS OR IMPLIED. 9. Recipient Investigator and Recipient accept all liability for any use of the Data and for any loss, claim, or damage which may arise from or in connection with this Agreement or the use, handling or storage of the Data and in no event shall Provider or Provider Investigator be liable for any such use, loss, claim or damage. [Insert Recipient Name Here] THE UNIVERSITY OF TEXAS M. D. ANDERSON CANCER CENTER By: By: Name: Name: Title: Title: Date: Date: Read and Understood: Recipient Scientist: Provider Scientist: [Insert Name and Title Here] [Insert Name and Title Here] Date: Date:

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000000783 Exome Sequencing
EGAS50000000784 RNASeq

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF50000277229 bai 4.5 MB
EGAF50000277230 bam 3.3 GB
EGAF50000277231 bai 4.0 MB
EGAF50000277232 bam 3.4 GB
EGAF50000277233 bam 3.0 GB
EGAF50000277234 bai 3.7 MB
EGAF50000277235 bai 4.1 MB
EGAF50000277236 bam 3.4 GB
EGAF50000277237 bai 3.9 MB
EGAF50000277238 bam 3.1 GB
EGAF50000277239 bai 4.7 MB
EGAF50000277240 bam 4.2 GB
EGAF50000277241 bai 3.9 MB
EGAF50000277242 bam 3.1 GB
EGAF50000277243 bai 4.8 MB
EGAF50000277244 bam 4.7 GB
EGAF50000277245 bam 4.3 GB
EGAF50000277246 bai 4.2 MB
EGAF50000277247 bam 2.5 GB
EGAF50000277248 bai 3.7 MB
EGAF50000277249 bai 3.7 MB
EGAF50000277250 bam 3.5 GB
EGAF50000277251 bam 1.7 GB
EGAF50000277252 bai 3.2 MB
EGAF50000277253 bai 4.9 MB
EGAF50000277254 bam 4.8 GB
EGAF50000277255 bai 5.2 MB
EGAF50000277256 bam 5.2 GB
EGAF50000277257 bai 4.8 MB
EGAF50000277258 bam 4.6 GB
EGAF50000277259 bai 4.9 MB
EGAF50000277260 bam 15.8 GB
EGAF50000277261 bai 4.7 MB
EGAF50000277262 bam 35.7 GB
EGAF50000277263 bam 20.4 GB
EGAF50000277264 bai 5.0 MB
EGAF50000277265 bai 4.9 MB
EGAF50000277266 bam 30.2 GB
EGAF50000277267 bai 5.0 MB
EGAF50000277268 bam 17.5 GB
EGAF50000277269 bai 4.6 MB
EGAF50000277270 bam 36.4 GB
EGAF50000277271 bai 5.0 MB
EGAF50000277272 bam 14.8 GB
EGAF50000277273 bam 17.2 GB
EGAF50000277274 bai 4.9 MB
EGAF50000277275 bai 4.9 MB
EGAF50000277276 bam 28.8 GB
EGAF50000277277 bai 5.0 MB
EGAF50000277278 bam 21.6 GB
EGAF50000277279 bam 28.6 GB
EGAF50000277280 bai 5.0 MB
EGAF50000277281 bai 5.0 MB
EGAF50000277282 bam 17.6 GB
EGAF50000277283 bai 5.0 MB
EGAF50000277284 bam 29.7 GB
EGAF50000277285 bai 4.7 MB
EGAF50000277286 bam 17.9 GB
EGAF50000277287 bam 30.1 GB
EGAF50000277288 bai 5.0 MB
EGAF50000277289 bai 5.0 MB
EGAF50000277290 bam 17.6 GB
EGAF50000277291 bai 4.9 MB
EGAF50000277292 bam 32.9 GB
EGAF50000277293 bam 20.7 GB
EGAF50000277294 bai 4.6 MB
EGAF50000277295 bai 4.7 MB
EGAF50000277296 bam 30.2 GB
EGAF50000277297 bai 4.9 MB
EGAF50000277298 bam 18.0 GB
EGAF50000277299 bai 5.0 MB
EGAF50000277300 bam 35.7 GB
EGAF50000277301 bai 5.0 MB
EGAF50000277302 bam 18.3 GB
EGAF50000277303 bai 4.7 MB
EGAF50000277304 bam 34.7 GB
EGAF50000277305 bai 4.9 MB
EGAF50000277306 bam 15.7 GB
EGAF50000277307 bai 4.9 MB
EGAF50000277308 bam 30.5 GB
EGAF50000277309 bai 4.1 MB
EGAF50000277310 bam 17.2 GB
EGAF50000277311 bai 5.1 MB
EGAF50000277312 bam 31.0 GB
EGAF50000277313 bai 4.9 MB
EGAF50000277314 bam 20.4 GB
EGAF50000277315 bai 4.6 MB
EGAF50000277316 bam 29.9 GB
EGAF50000277317 bai 4.9 MB
EGAF50000277318 bam 15.5 GB
EGAF50000277319 bam 31.5 GB
EGAF50000277320 bai 4.9 MB
EGAF50000277321 bai 4.9 MB
EGAF50000277322 bam 15.0 GB
EGAF50000277323 bai 5.0 MB
EGAF50000277324 bam 29.8 GB
EGAF50000277325 bai 5.0 MB
EGAF50000277326 bam 15.6 GB
EGAF50000277327 bai 5.0 MB
EGAF50000277328 bam 36.7 GB
EGAF50000277329 bai 4.3 MB
EGAF50000277330 bam 4.1 GB
EGAF50000277331 bai 3.7 MB
EGAF50000277332 bam 2.9 GB
EGAF50000277333 bai 3.3 MB
EGAF50000277334 bam 2.1 GB
EGAF50000277335 bai 4.2 MB
EGAF50000277336 bam 3.2 GB
EGAF50000277337 bam 2.8 GB
EGAF50000277338 bai 3.7 MB
EGAF50000277339 bai 3.4 MB
EGAF50000277340 bam 2.7 GB
EGAF50000277341 bai 3.7 MB
EGAF50000277342 bam 3.0 GB
EGAF50000277343 bai 4.4 MB
EGAF50000277344 bam 3.8 GB
EGAF50000277345 bai 4.2 MB
EGAF50000277346 bam 3.8 GB
EGAF50000277347 bam 3.4 GB
EGAF50000277348 bai 3.9 MB
EGAF50000277349 bai 3.8 MB
EGAF50000277350 bam 2.6 GB
EGAF50000277351 bai 3.2 MB
EGAF50000277352 bam 2.4 GB
EGAF50000277353 bam 2.5 GB
EGAF50000277354 bai 3.4 MB
EGAF50000277355 bai 4.0 MB
EGAF50000277356 bam 3.3 GB
EGAF50000277357 bai 2.4 MB
EGAF50000277358 bam 1.3 GB
EGAF50000277359 bai 4.4 MB
EGAF50000277360 bam 3.7 GB
EGAF50000277361 bai 4.6 MB
EGAF50000277362 bam 3.5 GB
EGAF50000277363 bai 3.4 MB
EGAF50000277364 bam 2.6 GB
EGAF50000277365 bai 4.3 MB
EGAF50000277366 bam 3.5 GB
EGAF50000277367 bai 3.9 MB
EGAF50000277368 bam 3.3 GB
EGAF50000277369 bam 3.1 GB
EGAF50000277370 bai 3.8 MB
EGAF50000277371 bam 1.7 GB
EGAF50000277372 bai 3.1 MB
EGAF50000277373 bai 3.8 MB
EGAF50000277374 bam 2.4 GB
EGAF50000277375 bai 3.6 MB
EGAF50000277376 bam 2.7 GB
EGAF50000277377 bai 4.9 MB
EGAF50000277378 bam 35.2 GB
EGAF50000277379 bam 18.8 GB
EGAF50000277380 bai 5.0 MB
EGAF50000277381 bai 4.4 MB
EGAF50000277382 bam 32.1 GB
EGAF50000277383 bai 5.0 MB
EGAF50000277384 bam 18.4 GB
EGAF50000277385 bam 39.6 GB
EGAF50000277386 bai 4.9 MB
EGAF50000277387 bai 5.0 MB
EGAF50000277388 bam 16.4 GB
EGAF50000277389 bai 5.0 MB
EGAF50000277390 bam 37.0 GB
EGAF50000277391 bai 5.0 MB
EGAF50000277392 bam 17.3 GB
EGAF50000277393 bam 32.2 GB
EGAF50000277394 bai 5.0 MB
EGAF50000277395 bai 5.0 MB
EGAF50000277396 bam 20.7 GB
EGAF50000277397 bai 5.0 MB
EGAF50000277398 bam 31.6 GB
EGAF50000277399 bai 5.0 MB
EGAF50000277400 bam 17.6 GB
EGAF50000277401 bai 5.0 MB
EGAF50000277402 bam 32.8 GB
EGAF50000277403 bai 4.5 MB
EGAF50000277404 bam 15.7 GB
EGAF50000277405 bai 5.0 MB
EGAF50000277406 bam 32.0 GB
EGAF50000277407 bai 4.8 MB
EGAF50000277408 bam 19.8 GB
EGAF50000277409 bam 34.2 GB
EGAF50000277410 bai 4.8 MB
EGAF50000277411 bai 5.0 MB
EGAF50000277412 bam 17.5 GB
EGAF50000277413 bai 4.9 MB
EGAF50000277414 bam 37.9 GB
EGAF50000277415 bai 5.0 MB
EGAF50000277416 bam 16.5 GB
EGAF50000277417 bai 5.0 MB
EGAF50000277418 bam 33.2 GB
EGAF50000277419 bam 18.3 GB
EGAF50000277420 bai 5.0 MB
EGAF50000277421 bai 5.0 MB
EGAF50000277422 bam 39.7 GB
EGAF50000277423 xlsx 13.8 kB
EGAF50000277424 xlsx 6.7 MB
EGAF50000277425 xlsx 9.7 kB
EGAF50000277426 xlsx 10.2 kB
EGAF50000277427 xlsx 21.8 kB
EGAF50000277428 txt 313.5 kB
EGAF50000277429 xlsx 338.5 kB
201 Files (1.6 TB)