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Shallow Whole Genome Sequencing (sWGS) from REPEAT trial

Samples associated to: "A phase Ib/II study of regorafenib and paclitaxel in patients with beyond first-line advanced esophagogastric carcinoma (REPEAT)". sWGS from 97 Esophagogastric Carcinoma samples. sWGS was done to carry out Copy Number Analysis. Dataset includes: .fastq, .bam and .bai files.

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Data originating from patient samples

The Amsterdam UMC, tumor genome analysis core, allows access to published datasets upon written application and signature of a Data Access Agreement (DAA). In addition, applications to clinical datasets require approval by a Data Access Committee (DAC), who assess whether the proposed work is allowed given patient consent, as well as the scientific purpose. To aid this process we ask you to provide the information below. Requests will be prioritised according to novelty of the research question. Applications with insufficient detail on objectives, justification, and methods/planned analyses are unlikely to be accepted. 1.Reference number for the dataset 2.Full legal name and address of university/institution 3.Name(s) of the Principle Investigator who will use the data: 4.Name(s) and job title(s) of any other investigators who will use the data: 5.Please provide a minimum of one reference to a publication that can be found on PubMed and where the Principle Investigator is an author: 6.How will the data be stored and where will it be stored? 7.What is the proposed study title and what are the objectives and outcomes of the study in which the data will be used 8.Please provide a brief justification or rationale for the proposed study (max 250 words) 9.Please provide a brief description of planned data analyses (max 250 words): 10.Will the results arising from use of the data be used for the creation of products for sale or for any commercial purpose?

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001006054 Cancer Genomics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF50000277555 bai 840 Bytes
EGAF50000277556 bai 6.1 MB
EGAF50000277557 bam 38.0 MB
EGAF50000277558 bai 6.1 MB
EGAF50000277559 bam 348.4 MB
EGAF50000277560 bai 840 Bytes
EGAF50000277561 bam 37.5 MB
EGAF50000277562 bai 6.1 MB
EGAF50000277563 bai 840 Bytes
EGAF50000277564 bam 339.3 MB
EGAF50000277565 bam 38.6 MB
EGAF50000277566 bai 6.1 MB
EGAF50000277567 bai 840 Bytes
EGAF50000277568 bam 347.9 MB
EGAF50000277569 bam 41.2 MB
EGAF50000277570 bai 6.2 MB
EGAF50000277571 bam 376.0 MB
EGAF50000277572 bai 840 Bytes
EGAF50000277573 bam 48.0 MB
EGAF50000277574 bai 6.2 MB
EGAF50000277575 bai 840 Bytes
EGAF50000277576 bam 437.3 MB
EGAF50000277577 bam 49.5 MB
EGAF50000277578 bai 6.1 MB
EGAF50000277579 bai 840 Bytes
EGAF50000277580 bam 452.2 MB
EGAF50000277581 bam 41.7 MB
EGAF50000277582 bai 6.1 MB
EGAF50000277583 bai 840 Bytes
EGAF50000277584 bam 378.2 MB
EGAF50000277585 bai 6.1 MB
EGAF50000277586 bam 45.4 MB
EGAF50000277587 bam 415.5 MB
EGAF50000277588 bai 840 Bytes
EGAF50000277589 bam 40.8 MB
EGAF50000277590 bai 6.2 MB
EGAF50000277591 bai 840 Bytes
EGAF50000277592 bam 370.7 MB
EGAF50000277593 bam 49.7 MB
EGAF50000277594 bai 6.1 MB
EGAF50000277595 bam 455.4 MB
EGAF50000277596 bai 840 Bytes
EGAF50000277597 bam 40.5 MB
EGAF50000277598 bai 6.1 MB
EGAF50000277599 bam 373.7 MB
EGAF50000277600 bai 840 Bytes
EGAF50000277601 bam 41.6 MB
EGAF50000277602 bai 6.1 MB
EGAF50000277603 bam 381.4 MB
EGAF50000277604 bai 840 Bytes
EGAF50000277605 bam 45.1 MB
EGAF50000277606 bai 6.1 MB
EGAF50000277607 bai 840 Bytes
EGAF50000277608 bam 410.5 MB
EGAF50000277609 bam 43.4 MB
EGAF50000277610 bai 6.1 MB
EGAF50000277611 bam 393.2 MB
EGAF50000277612 bai 840 Bytes
EGAF50000277613 bam 36.0 MB
EGAF50000277614 bai 6.1 MB
EGAF50000277615 bam 326.1 MB
EGAF50000277616 bai 840 Bytes
EGAF50000277617 bam 41.3 MB
EGAF50000277618 bai 6.1 MB
EGAF50000277619 bai 840 Bytes
EGAF50000277620 bam 375.6 MB
EGAF50000277621 bam 42.8 MB
EGAF50000277622 bai 6.2 MB
EGAF50000277623 bai 840 Bytes
EGAF50000277624 bam 386.8 MB
EGAF50000277625 bam 54.2 MB
EGAF50000277626 bai 6.2 MB
EGAF50000277627 bai 840 Bytes
EGAF50000277628 bam 497.6 MB
EGAF50000277629 bam 49.8 MB
EGAF50000277630 bai 6.1 MB
EGAF50000277631 bai 840 Bytes
EGAF50000277632 bam 454.3 MB
EGAF50000277633 bam 38.8 MB
EGAF50000277634 bai 6.2 MB
EGAF50000277635 bam 348.2 MB
EGAF50000277636 bai 840 Bytes
EGAF50000277637 bam 48.0 MB
EGAF50000277638 bai 6.1 MB
EGAF50000277639 bai 840 Bytes
EGAF50000277640 bam 437.4 MB
EGAF50000277641 bam 43.1 MB
EGAF50000277642 bai 6.1 MB
EGAF50000277643 bai 840 Bytes
EGAF50000277644 bam 396.5 MB
EGAF50000277645 bam 47.9 MB
EGAF50000277646 bai 6.1 MB
EGAF50000277647 bam 435.8 MB
EGAF50000277648 bai 840 Bytes
EGAF50000277649 bam 43.8 MB
EGAF50000277650 bai 6.1 MB
EGAF50000277651 bai 840 Bytes
EGAF50000277652 bam 399.2 MB
EGAF50000277653 bam 38.1 MB
EGAF50000277654 bai 6.1 MB
EGAF50000277655 bai 840 Bytes
EGAF50000277656 bam 344.3 MB
EGAF50000277657 bam 41.1 MB
EGAF50000277658 bai 6.1 MB
EGAF50000277659 bam 373.9 MB
EGAF50000277660 bai 840 Bytes
EGAF50000277661 bam 40.1 MB
EGAF50000277662 bai 6.2 MB
EGAF50000277663 bam 369.9 MB
EGAF50000277664 bai 840 Bytes
EGAF50000277665 bam 49.1 MB
EGAF50000277666 bai 6.1 MB
EGAF50000277667 bai 840 Bytes
EGAF50000277668 bam 453.9 MB
EGAF50000277669 bam 396.4 MB
EGAF50000277670 bai 6.1 MB
EGAF50000277671 bam 43.1 MB
EGAF50000277672 bai 840 Bytes
EGAF50000277673 bam 39.0 MB
EGAF50000277674 bai 6.1 MB
EGAF50000277675 bai 840 Bytes
EGAF50000277676 bam 358.0 MB
EGAF50000277677 bam 328.2 MB
EGAF50000277678 bai 6.1 MB
EGAF50000277679 bam 36.1 MB
EGAF50000277680 bai 840 Bytes
EGAF50000277681 bam 41.4 MB
EGAF50000277682 bam 380.7 MB
EGAF50000277683 fastq.gz 333.4 MB
EGAF50000277684 fastq.gz 721.5 MB
EGAF50000277685 fastq.gz 509.3 MB
EGAF50000277686 fastq.gz 699.1 MB
EGAF50000277687 fastq.gz 518.8 MB
EGAF50000277688 fastq.gz 274.2 MB
EGAF50000277689 fastq.gz 2.1 GB
EGAF50000277690 fastq.gz 516.5 MB
EGAF50000277691 fastq.gz 251.0 MB
EGAF50000277692 fastq.gz 36.5 MB
EGAF50000277693 fastq.gz 245.8 MB
EGAF50000277694 fastq.gz 36.5 MB
EGAF50000277695 fastq.gz 251.4 MB
EGAF50000277696 fastq.gz 37.5 MB
EGAF50000277697 fastq.gz 271.8 MB
EGAF50000277698 fastq.gz 39.6 MB
EGAF50000277699 fastq.gz 317.2 MB
EGAF50000277700 fastq.gz 46.3 MB
EGAF50000277701 fastq.gz 326.9 MB
EGAF50000277702 fastq.gz 47.9 MB
EGAF50000277703 fastq.gz 273.2 MB
EGAF50000277704 fastq.gz 40.3 MB
EGAF50000277705 fastq.gz 302.4 MB
EGAF50000277706 fastq.gz 44.0 MB
EGAF50000277707 fastq.gz 267.8 MB
EGAF50000277708 fastq.gz 39.5 MB
EGAF50000277709 fastq.gz 329.9 MB
EGAF50000277710 fastq.gz 48.7 MB
EGAF50000277711 fastq.gz 269.6 MB
EGAF50000277712 fastq.gz 39.8 MB
EGAF50000277713 fastq.gz 274.3 MB
EGAF50000277714 fastq.gz 40.0 MB
EGAF50000277715 fastq.gz 296.5 MB
EGAF50000277716 fastq.gz 43.7 MB
EGAF50000277717 fastq.gz 284.2 MB
EGAF50000277718 fastq.gz 42.1 MB
EGAF50000277719 fastq.gz 234.7 MB
EGAF50000277720 fastq.gz 34.9 MB
EGAF50000277721 fastq.gz 271.2 MB
EGAF50000277722 fastq.gz 40.0 MB
EGAF50000277723 fastq.gz 281.0 MB
EGAF50000277724 fastq.gz 41.3 MB
EGAF50000277725 fastq.gz 361.1 MB
EGAF50000277726 fastq.gz 52.4 MB
EGAF50000277727 fastq.gz 328.8 MB
EGAF50000277728 fastq.gz 48.1 MB
EGAF50000277729 fastq.gz 252.4 MB
EGAF50000277730 fastq.gz 37.3 MB
EGAF50000277731 fastq.gz 317.7 MB
EGAF50000277732 fastq.gz 46.4 MB
EGAF50000277733 fastq.gz 286.0 MB
EGAF50000277734 fastq.gz 42.3 MB
EGAF50000277735 fastq.gz 316.0 MB
EGAF50000277736 fastq.gz 46.1 MB
EGAF50000277737 fastq.gz 288.4 MB
EGAF50000277738 fastq.gz 42.4 MB
EGAF50000277739 fastq.gz 248.1 MB
EGAF50000277740 fastq.gz 36.7 MB
EGAF50000277741 fastq.gz 271.4 MB
EGAF50000277742 fastq.gz 40.3 MB
EGAF50000277743 fastq.gz 267.3 MB
EGAF50000277744 fastq.gz 39.5 MB
EGAF50000277745 fastq.gz 329.3 MB
EGAF50000277746 fastq.gz 48.5 MB
EGAF50000277747 fastq.gz 285.4 MB
EGAF50000277748 fastq.gz 42.0 MB
EGAF50000277749 fastq.gz 258.7 MB
EGAF50000277750 fastq.gz 38.3 MB
EGAF50000277751 fastq.gz 237.0 MB
EGAF50000277752 fastq.gz 35.2 MB
EGAF50000277753 fastq.gz 275.0 MB
EGAF50000277754 fastq.gz 40.8 MB
200 Files (30.2 GB)