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WES dataset

Associated with Molecular biomarkers in progression from refractory celiac disease to the lethal cancer variety enteropathy associated T cell lymphoma (EATL) Study. Whole Exome Sequencing (WES) of 63 samples. WES analysis done to detect mutations and copy number aberration predictive for progression from RCD to EATL.

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Data originating from patient samples

The Amsterdam UMC, tumor genome analysis core, allows access to published datasets upon written application and signature of a Data Access Agreement (DAA). In addition, applications to clinical datasets require approval by a Data Access Committee (DAC), who assess whether the proposed work is allowed given patient consent, as well as the scientific purpose. To aid this process we ask you to provide the information below. Requests will be prioritised according to novelty of the research question. Applications with insufficient detail on objectives, justification, and methods/planned analyses are unlikely to be accepted. 1.Reference number for the dataset 2.Full legal name and address of university/institution 3.Name(s) of the Principle Investigator who will use the data: 4.Name(s) and job title(s) of any other investigators who will use the data: 5.Please provide a minimum of one reference to a publication that can be found on PubMed and where the Principle Investigator is an author: 6.How will the data be stored and where will it be stored? 7.What is the proposed study title and what are the objectives and outcomes of the study in which the data will be used 8.Please provide a brief justification or rationale for the proposed study (max 250 words) 9.Please provide a brief description of planned data analyses (max 250 words): 10.Will the results arising from use of the data be used for the creation of products for sale or for any commercial purpose?

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001006669 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00007645185 bam 554.8 MB
EGAF00007645186 bam 592.2 MB
EGAF00007645187 bam 471.6 MB
EGAF00007645188 bam 562.6 MB
EGAF00007645189 bam 553.2 MB
EGAF00007645190 bam 667.8 MB
EGAF00007645191 bam 557.4 MB
EGAF00007645192 bam 607.4 MB
EGAF00007645193 bam 600.5 MB
EGAF00007645194 bam 612.6 MB
EGAF00007645195 bam 622.5 MB
EGAF00007645196 bam 574.7 MB
EGAF00007645197 bam 545.5 MB
EGAF00007645198 bam 551.3 MB
EGAF00007645199 bam 760.5 MB
EGAF00007645200 bam 608.8 MB
EGAF00007645201 bam 637.5 MB
EGAF00007645202 bam 492.9 MB
EGAF00007645203 bam 528.5 MB
EGAF00007645204 bam 572.6 MB
EGAF00007645205 bam 660.9 MB
EGAF00007645206 bam 619.8 MB
EGAF00007645207 bam 684.0 MB
EGAF00007645208 bam 367.8 MB
EGAF00007645209 bam 592.0 MB
EGAF00007645210 bam 488.6 MB
EGAF00007645211 bam 765.2 MB
EGAF00007645212 bam 694.5 MB
EGAF00007645213 bam 772.9 MB
EGAF00007645214 bam 615.9 MB
EGAF00007645215 bam 878.7 MB
EGAF00007645216 bam 978.1 MB
EGAF00007645217 bam 673.6 MB
EGAF00007645218 bam 547.2 MB
EGAF00007645219 bam 607.8 MB
EGAF00007645220 bam 625.5 MB
EGAF00007645221 bam 618.2 MB
EGAF00007645222 bam 824.4 MB
EGAF00007645223 bam 602.2 MB
EGAF00007645224 bam 619.5 MB
EGAF00007645225 bam 927.4 MB
EGAF00007645226 bam 466.5 MB
EGAF00007645227 bam 545.3 MB
EGAF00007645228 bam 577.8 MB
EGAF00007645229 bam 541.7 MB
EGAF00007645230 bam 472.7 MB
EGAF00007645231 bam 680.1 MB
EGAF00007645232 bam 638.8 MB
EGAF00007645233 bam 614.5 MB
EGAF00007645234 bam 580.5 MB
EGAF00007645235 bam 695.4 MB
EGAF00007645236 bam 678.4 MB
EGAF00007645237 bam 584.9 MB
EGAF00007645238 bam 443.0 MB
EGAF00007645239 bam 532.9 MB
EGAF00007645240 bam 586.7 MB
EGAF00007645241 bam 609.8 MB
EGAF00007645242 bam 641.2 MB
EGAF00007645243 bam 703.5 MB
EGAF00007645244 bam 554.8 MB
EGAF00007645245 bam 555.3 MB
EGAF00007645246 bam 542.6 MB
EGAF00007645247 bam 469.5 MB
63 Files (38.6 GB)