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WES dataset

Associated with Molecular biomarkers in progression from refractory celiac disease to the lethal cancer variety enteropathy associated T cell lymphoma (EATL) Study. Whole Exome Sequencing (WES) of 63 samples. WES analysis done to detect mutations and copy number aberration predictive for progression from RCD to EATL.

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Data originating from patient samples

The Amsterdam UMC, tumor genome analysis core, allows access to published datasets upon written application and signature of a Data Access Agreement (DAA). In addition, applications to clinical datasets require approval by a Data Access Committee (DAC), who assess whether the proposed work is allowed given patient consent, as well as the scientific purpose. To aid this process we ask you to provide the information below. Requests will be prioritised according to novelty of the research question. Applications with insufficient detail on objectives, justification, and methods/planned analyses are unlikely to be accepted. 1.Reference number for the dataset 2.Full legal name and address of university/institution 3.Name(s) of the Principle Investigator who will use the data: 4.Name(s) and job title(s) of any other investigators who will use the data: 5.Please provide a minimum of one reference to a publication that can be found on PubMed and where the Principle Investigator is an author: 6.How will the data be stored and where will it be stored? 7.What is the proposed study title and what are the objectives and outcomes of the study in which the data will be used 8.Please provide a brief justification or rationale for the proposed study (max 250 words) 9.Please provide a brief description of planned data analyses (max 250 words): 10.Will the results arising from use of the data be used for the creation of products for sale or for any commercial purpose?

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001006669 Other
  • The correct files were associated to the correct runs (association with the erroneous runs was removed)
  • More detailed sample phenotype following NCIT ontology
  • Dataset Released

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
EGAF50000476456 bam 18.4 GB
EGAF50000476457 bam 15.5 GB
EGAF50000476458 bam 16.1 GB
EGAF50000476459 bam 21.9 GB
EGAF50000476460 bam 19.8 GB
EGAF50000476461 bam 1.9 GB
EGAF50000476462 bam 1.5 GB
EGAF50000476463 bam 2.4 GB
EGAF50000476464 bam 2.7 GB
EGAF50000476465 bam 8.4 GB
EGAF50000476466 bam 11.3 GB
EGAF50000476467 bam 9.7 GB
EGAF50000476468 bam 12.4 GB
EGAF50000476469 bam 11.5 GB
EGAF50000476470 bam 10.6 GB
EGAF50000476471 bam 8.3 GB
EGAF50000476472 bam 8.5 GB
EGAF50000476473 bam 2.4 GB
EGAF50000476474 bam 2.6 GB
EGAF50000476475 bam 19.3 GB
EGAF50000476476 bam 14.2 GB
EGAF50000476477 bam 19.6 GB
EGAF50000476478 bam 8.7 GB
EGAF50000476479 bam 15.1 GB
EGAF50000476480 bam 8.7 GB
EGAF50000476481 bam 17.7 GB
EGAF50000476482 bam 22.1 GB
EGAF50000476483 bam 9.0 GB
EGAF50000476484 bam 9.7 GB
EGAF50000476485 bam 1.8 GB
EGAF50000476486 bam 1.6 GB
EGAF50000476487 bam 2.3 GB
EGAF50000476488 bam 11.0 GB
EGAF50000476489 bam 10.9 GB
EGAF50000476490 bam 93.8 GB
EGAF50000476491 bam 76.5 GB
EGAF50000476492 bam 39.3 GB
EGAF50000476493 bam 3.0 GB
EGAF50000476494 bam 1.9 GB
EGAF50000476495 bam 20.1 GB
EGAF50000476496 bam 14.5 GB
EGAF50000476497 bam 20.7 GB
EGAF50000476498 bam 11.0 GB
EGAF50000476499 bam 23.5 GB
EGAF50000476500 bam 21.2 GB
EGAF50000476501 bam 22.4 GB
EGAF50000476502 bam 18.3 GB
EGAF50000476503 bam 25.0 GB
EGAF50000476504 bam 19.6 GB
EGAF50000476505 bam 9.6 GB
EGAF50000476506 bam 16.4 GB
EGAF50000476507 bam 24.5 GB
EGAF50000476508 bam 18.3 GB
EGAF50000476509 bam 17.8 GB
EGAF50000476510 bam 20.3 GB
EGAF50000476511 bam 17.3 GB
EGAF50000476512 bam 16.7 GB
EGAF50000476513 bam 17.8 GB
EGAF50000476514 bam 16.7 GB
EGAF50000476515 bam 30.3 GB
EGAF50000476516 bam 25.5 GB
EGAF50000476517 bam 19.7 GB
EGAF50000476518 bam 15.7 GB
EGAF50000476519 bam 21.9 GB
EGAF50000476520 bam 21.8 GB
EGAF50000476521 bam 15.5 GB
EGAF50000476522 bam 23.7 GB
67 Files (1.1 TB)