NICHE - DNA-seq of MMR proficient early stage colon cancers
The dataset includes 152 FASTQ files from paired-end WXS sequencing on Illumina HiSeq2500 or Novaseq 6000 for 31 pMMR patients. This includes 31 tumor DNA and 31 blood germline samples.
- 17/03/2025
- 62 samples
- DAC: EGAC50000000055
- Technologies: Illumina HiSeq 2500, Illumina NovaSeq 6000
Netherlands Cancer Institute - Antoni van Leeuwenhoek (NKI-AVL) general policy
Data is available under reasonable request. All data requests will be reviewed by the NKI IRB and must be supported by the Principal Investigator of the study. The researcher will need to sign a data access agreement with the NKI after approval.
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS50000000856 | Exome Sequencing |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Located in | |
|---|---|---|---|---|
| EGAF50000311966 | fastq.gz | 3.4 GB | ||
| EGAF50000311967 | fastq.gz | 3.3 GB | ||
| EGAF50000311968 | fastq.gz | 2.8 GB | ||
| EGAF50000311969 | fastq.gz | 2.8 GB | ||
| EGAF50000311970 | fastq.gz | 3.5 GB | ||
| EGAF50000311971 | fastq.gz | 3.3 GB | ||
| EGAF50000311972 | fastq.gz | 3.6 GB | ||
| EGAF50000311973 | fastq.gz | 3.4 GB | ||
| EGAF50000311974 | fastq.gz | 3.5 GB | ||
| EGAF50000311975 | fastq.gz | 3.4 GB | ||
| EGAF50000311976 | fastq.gz | 3.9 GB | ||
| EGAF50000311977 | fastq.gz | 3.7 GB | ||
| EGAF50000311978 | fastq.gz | 3.5 GB | ||
| EGAF50000311979 | fastq.gz | 3.4 GB | ||
| EGAF50000311980 | fastq.gz | 3.2 GB | ||
| EGAF50000311981 | fastq.gz | 3.4 GB | ||
| EGAF50000311982 | fastq.gz | 3.1 GB | ||
| EGAF50000311983 | fastq.gz | 2.9 GB | ||
| EGAF50000311984 | fastq.gz | 3.4 GB | ||
| EGAF50000311985 | fastq.gz | 3.5 GB | ||
| EGAF50000311986 | fastq.gz | 3.0 GB | ||
| EGAF50000311987 | fastq.gz | 2.9 GB | ||
| EGAF50000311988 | fastq.gz | 3.5 GB | ||
| EGAF50000311989 | fastq.gz | 3.4 GB | ||
| EGAF50000311990 | fastq.gz | 3.5 GB | ||
| EGAF50000311991 | fastq.gz | 3.7 GB | ||
| EGAF50000311992 | fastq.gz | 2.2 GB | ||
| EGAF50000311993 | fastq.gz | 2.5 GB | ||
| EGAF50000311994 | fastq.gz | 1.0 GB | ||
| EGAF50000311995 | fastq.gz | 1.1 GB | ||
| EGAF50000311996 | fastq.gz | 1.9 GB | ||
| EGAF50000311997 | fastq.gz | 2.3 GB | ||
| EGAF50000311998 | fastq.gz | 893.7 MB | ||
| EGAF50000311999 | fastq.gz | 1.0 GB | ||
| EGAF50000312000 | fastq.gz | 1.6 GB | ||
| EGAF50000312001 | fastq.gz | 2.0 GB | ||
| EGAF50000312002 | fastq.gz | 799.4 MB | ||
| EGAF50000312003 | fastq.gz | 925.7 MB | ||
| EGAF50000312004 | fastq.gz | 2.0 GB | ||
| EGAF50000312005 | fastq.gz | 1.7 GB | ||
| EGAF50000312006 | fastq.gz | 975.7 MB | ||
| EGAF50000312007 | fastq.gz | 848.0 MB | ||
| EGAF50000312008 | fastq.gz | 1.5 GB | ||
| EGAF50000312009 | fastq.gz | 1.8 GB | ||
| EGAF50000312010 | fastq.gz | 736.3 MB | ||
| EGAF50000312011 | fastq.gz | 867.7 MB | ||
| EGAF50000312012 | fastq.gz | 1.9 GB | ||
| EGAF50000312013 | fastq.gz | 2.3 GB | ||
| EGAF50000312014 | fastq.gz | 934.9 MB | ||
| EGAF50000312015 | fastq.gz | 1.1 GB | ||
| EGAF50000312016 | fastq.gz | 2.2 GB | ||
| EGAF50000312017 | fastq.gz | 2.6 GB | ||
| EGAF50000312018 | fastq.gz | 1.0 GB | ||
| EGAF50000312019 | fastq.gz | 1.2 GB | ||
| EGAF50000312020 | fastq.gz | 2.1 GB | ||
| EGAF50000312021 | fastq.gz | 2.5 GB | ||
| EGAF50000312022 | fastq.gz | 1.1 GB | ||
| EGAF50000312023 | fastq.gz | 1.0 GB | ||
| EGAF50000312024 | fastq.gz | 2.1 GB | ||
| EGAF50000312025 | fastq.gz | 2.5 GB | ||
| EGAF50000312026 | fastq.gz | 1.1 GB | ||
| EGAF50000312027 | fastq.gz | 1.0 GB | ||
| EGAF50000312028 | fastq.gz | 2.3 GB | ||
| EGAF50000312029 | fastq.gz | 2.8 GB | ||
| EGAF50000312030 | fastq.gz | 1.2 GB | ||
| EGAF50000312031 | fastq.gz | 1.3 GB | ||
| EGAF50000312032 | fastq.gz | 1.2 GB | ||
| EGAF50000312033 | fastq.gz | 1.5 GB | ||
| EGAF50000312034 | fastq.gz | 779.9 MB | ||
| EGAF50000312035 | fastq.gz | 641.5 MB | ||
| EGAF50000312036 | fastq.gz | 1.6 GB | ||
| EGAF50000312037 | fastq.gz | 1.9 GB | ||
| EGAF50000312038 | fastq.gz | 903.3 MB | ||
| EGAF50000312039 | fastq.gz | 774.9 MB | ||
| EGAF50000312040 | fastq.gz | 3.0 GB | ||
| EGAF50000312041 | fastq.gz | 3.7 GB | ||
| EGAF50000312042 | fastq.gz | 1.5 GB | ||
| EGAF50000312043 | fastq.gz | 1.7 GB | ||
| EGAF50000312044 | fastq.gz | 3.5 GB | ||
| EGAF50000312045 | fastq.gz | 2.9 GB | ||
| EGAF50000312046 | fastq.gz | 1.4 GB | ||
| EGAF50000312047 | fastq.gz | 1.6 GB | ||
| EGAF50000312048 | fastq.gz | 3.6 GB | ||
| EGAF50000312049 | fastq.gz | 3.5 GB | ||
| EGAF50000312050 | fastq.gz | 3.4 GB | ||
| EGAF50000312051 | fastq.gz | 3.3 GB | ||
| EGAF50000312052 | fastq.gz | 3.1 GB | ||
| EGAF50000312053 | fastq.gz | 3.0 GB | ||
| EGAF50000312054 | fastq.gz | 3.0 GB | ||
| EGAF50000312055 | fastq.gz | 3.1 GB | ||
| EGAF50000312056 | fastq.gz | 2.9 GB | ||
| EGAF50000312057 | fastq.gz | 2.8 GB | ||
| EGAF50000312058 | fastq.gz | 3.0 GB | ||
| EGAF50000312059 | fastq.gz | 2.9 GB | ||
| EGAF50000312060 | fastq.gz | 3.5 GB | ||
| EGAF50000312061 | fastq.gz | 3.4 GB | ||
| EGAF50000312062 | fastq.gz | 3.0 GB | ||
| EGAF50000312063 | fastq.gz | 2.9 GB | ||
| EGAF50000312064 | fastq.gz | 3.5 GB | ||
| EGAF50000312065 | fastq.gz | 3.4 GB | ||
| EGAF50000312066 | fastq.gz | 2.9 GB | ||
| EGAF50000312067 | fastq.gz | 2.8 GB | ||
| EGAF50000312068 | fastq.gz | 3.0 GB | ||
| EGAF50000312069 | fastq.gz | 3.0 GB | ||
| EGAF50000312070 | fastq.gz | 2.9 GB | ||
| EGAF50000312071 | fastq.gz | 3.0 GB | ||
| EGAF50000312072 | fastq.gz | 3.1 GB | ||
| EGAF50000312073 | fastq.gz | 3.0 GB | ||
| EGAF50000312074 | fastq.gz | 3.2 GB | ||
| EGAF50000312075 | fastq.gz | 3.2 GB | ||
| EGAF50000312076 | fastq.gz | 3.0 GB | ||
| EGAF50000312077 | fastq.gz | 2.9 GB | ||
| EGAF50000312078 | fastq.gz | 2.7 GB | ||
| EGAF50000312079 | fastq.gz | 2.8 GB | ||
| EGAF50000312080 | fastq.gz | 2.6 GB | ||
| EGAF50000312081 | fastq.gz | 2.5 GB | ||
| EGAF50000312082 | fastq.gz | 2.6 GB | ||
| EGAF50000312083 | fastq.gz | 2.7 GB | ||
| EGAF50000312084 | fastq.gz | 2.9 GB | ||
| EGAF50000312085 | fastq.gz | 2.9 GB | ||
| EGAF50000312106 | fastq.gz | 2.2 GB | ||
| EGAF50000312107 | fastq.gz | 2.3 GB | ||
| EGAF50000312108 | fastq.gz | 2.4 GB | ||
| EGAF50000312109 | fastq.gz | 2.3 GB | ||
| EGAF50000312110 | fastq.gz | 3.2 GB | ||
| EGAF50000312111 | fastq.gz | 3.3 GB | ||
| EGAF50000312112 | fastq.gz | 3.2 GB | ||
| EGAF50000312113 | fastq.gz | 3.3 GB | ||
| EGAF50000312114 | fastq.gz | 2.9 GB | ||
| EGAF50000312115 | fastq.gz | 3.0 GB | ||
| EGAF50000312116 | fastq.gz | 3.1 GB | ||
| EGAF50000312117 | fastq.gz | 3.1 GB | ||
| EGAF50000312118 | fastq.gz | 3.0 GB | ||
| EGAF50000312119 | fastq.gz | 3.0 GB | ||
| EGAF50000312120 | fastq.gz | 2.8 GB | ||
| EGAF50000312121 | fastq.gz | 2.8 GB | ||
| EGAF50000312122 | fastq.gz | 3.2 GB | ||
| EGAF50000312123 | fastq.gz | 3.2 GB | ||
| EGAF50000312124 | fastq.gz | 3.5 GB | ||
| EGAF50000312125 | fastq.gz | 3.4 GB | ||
| EGAF50000312126 | fastq.gz | 3.2 GB | ||
| EGAF50000312127 | fastq.gz | 3.1 GB | ||
| EGAF50000312128 | fastq.gz | 3.4 GB | ||
| EGAF50000312129 | fastq.gz | 3.4 GB | ||
| EGAF50000312130 | fastq.gz | 3.0 GB | ||
| EGAF50000312131 | fastq.gz | 3.0 GB | ||
| EGAF50000312132 | fastq.gz | 3.1 GB | ||
| EGAF50000312133 | fastq.gz | 3.0 GB | ||
| EGAF50000312134 | fastq.gz | 3.2 GB | ||
| EGAF50000312135 | fastq.gz | 3.2 GB | ||
| EGAF50000312136 | fastq.gz | 4.0 GB | ||
| EGAF50000312137 | fastq.gz | 4.0 GB | ||
| 152 Files (392.7 GB) | ||||