NICHE - RNA-seq of MMR proficient early stage colon cancers
The dataset includes 29 FASTQ files from single-end total RNA sequencing on Illumina HiSeq2500 and 66 files from 33 paired-end RNA sequencing samples on Novaseq 6000 for 31 pMMR colon cancer patients.
- 17/03/2025
- 62 samples
- DAC: EGAC50000000055
- Technologies: Illumina HiSeq 2500, Illumina NovaSeq 6000
Netherlands Cancer Institute - Antoni van Leeuwenhoek (NKI-AVL) general policy
Data is available under reasonable request. All data requests will be reviewed by the NKI IRB and must be supported by the Principal Investigator of the study. The researcher will need to sign a data access agreement with the NKI after approval.
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS50000000856 | Exome Sequencing |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Located in | |
|---|---|---|---|---|
| EGAF50000311937 | fastq.gz | 827.1 MB | ||
| EGAF50000311938 | fastq.gz | 795.8 MB | ||
| EGAF50000311939 | fastq.gz | 1.5 GB | ||
| EGAF50000311940 | fastq.gz | 1.5 GB | ||
| EGAF50000311941 | fastq.gz | 1.5 GB | ||
| EGAF50000311942 | fastq.gz | 1.5 GB | ||
| EGAF50000311943 | fastq.gz | 700.2 MB | ||
| EGAF50000311944 | fastq.gz | 681.8 MB | ||
| EGAF50000311945 | fastq.gz | 742.7 MB | ||
| EGAF50000311946 | fastq.gz | 714.2 MB | ||
| EGAF50000311947 | fastq.gz | 1.7 GB | ||
| EGAF50000311948 | fastq.gz | 1.7 GB | ||
| EGAF50000311949 | fastq.gz | 474.2 MB | ||
| EGAF50000311950 | fastq.gz | 462.2 MB | ||
| EGAF50000311951 | fastq.gz | 2.0 GB | ||
| EGAF50000311952 | fastq.gz | 2.1 GB | ||
| EGAF50000311953 | fastq.gz | 791.5 MB | ||
| EGAF50000311954 | fastq.gz | 814.3 MB | ||
| EGAF50000311955 | fastq.gz | 979.4 MB | ||
| EGAF50000311956 | fastq.gz | 1.0 GB | ||
| EGAF50000311957 | fastq.gz | 1.7 GB | ||
| EGAF50000311958 | fastq.gz | 1.6 GB | ||
| EGAF50000311959 | fastq.gz | 675.5 MB | ||
| EGAF50000311960 | fastq.gz | 698.1 MB | ||
| EGAF50000311961 | fastq.gz | 1.2 GB | ||
| EGAF50000311962 | fastq.gz | 1.2 GB | ||
| EGAF50000311963 | fastq.gz | 710.6 MB | ||
| EGAF50000311964 | fastq.gz | 691.3 MB | ||
| EGAF50000311965 | fastq.gz | 834.8 MB | ||
| EGAF50000312086 | fastq.gz | 309.8 MB | ||
| EGAF50000312087 | fastq.gz | 302.5 MB | ||
| EGAF50000312088 | fastq.gz | 1.2 GB | ||
| EGAF50000312089 | fastq.gz | 1.2 GB | ||
| EGAF50000312090 | fastq.gz | 1.5 GB | ||
| EGAF50000312091 | fastq.gz | 1.4 GB | ||
| EGAF50000312092 | fastq.gz | 954.1 MB | ||
| EGAF50000312093 | fastq.gz | 930.2 MB | ||
| EGAF50000312094 | fastq.gz | 2.0 GB | ||
| EGAF50000312095 | fastq.gz | 2.0 GB | ||
| EGAF50000312096 | fastq.gz | 823.7 MB | ||
| EGAF50000312097 | fastq.gz | 849.1 MB | ||
| EGAF50000312098 | fastq.gz | 814.0 MB | ||
| EGAF50000312099 | fastq.gz | 1.3 GB | ||
| EGAF50000312100 | fastq.gz | 1.0 GB | ||
| EGAF50000312101 | fastq.gz | 1.3 GB | ||
| EGAF50000312102 | fastq.gz | 917.2 MB | ||
| EGAF50000312103 | fastq.gz | 263.2 MB | ||
| EGAF50000312104 | fastq.gz | 1.1 GB | ||
| EGAF50000312105 | fastq.gz | 1.6 GB | ||
| EGAF50000312138 | fastq.gz | 1.4 GB | ||
| EGAF50000312139 | fastq.gz | 1.4 GB | ||
| EGAF50000312140 | fastq.gz | 848.4 MB | ||
| EGAF50000312141 | fastq.gz | 826.7 MB | ||
| EGAF50000312142 | fastq.gz | 973.6 MB | ||
| EGAF50000312143 | fastq.gz | 997.3 MB | ||
| EGAF50000312144 | fastq.gz | 1.3 GB | ||
| EGAF50000312145 | fastq.gz | 1.3 GB | ||
| EGAF50000312146 | fastq.gz | 1.2 GB | ||
| EGAF50000312147 | fastq.gz | 1.2 GB | ||
| EGAF50000312148 | fastq.gz | 1.0 GB | ||
| EGAF50000312149 | fastq.gz | 1.1 GB | ||
| EGAF50000312150 | fastq.gz | 1.1 GB | ||
| EGAF50000312151 | fastq.gz | 1.1 GB | ||
| EGAF50000312152 | fastq.gz | 1.9 GB | ||
| EGAF50000312153 | fastq.gz | 2.0 GB | ||
| EGAF50000312154 | fastq.gz | 1.4 GB | ||
| EGAF50000312155 | fastq.gz | 1.5 GB | ||
| EGAF50000312156 | fastq.gz | 612.9 MB | ||
| EGAF50000312157 | fastq.gz | 599.0 MB | ||
| EGAF50000312158 | fastq.gz | 878.5 MB | ||
| EGAF50000312159 | fastq.gz | 855.0 MB | ||
| EGAF50000312160 | fastq.gz | 1.4 GB | ||
| EGAF50000312161 | fastq.gz | 1.3 GB | ||
| EGAF50000312162 | fastq.gz | 893.8 MB | ||
| EGAF50000312163 | fastq.gz | 692.6 MB | ||
| EGAF50000312164 | fastq.gz | 1.6 GB | ||
| EGAF50000312165 | fastq.gz | 824.1 MB | ||
| EGAF50000312166 | fastq.gz | 980.0 MB | ||
| EGAF50000312167 | fastq.gz | 1.1 GB | ||
| EGAF50000312168 | fastq.gz | 1.0 GB | ||
| EGAF50000312169 | fastq.gz | 567.7 MB | ||
| EGAF50000312170 | fastq.gz | 548.2 MB | ||
| EGAF50000312171 | fastq.gz | 674.0 MB | ||
| EGAF50000312172 | fastq.gz | 1.3 GB | ||
| EGAF50000312173 | fastq.gz | 878.5 MB | ||
| EGAF50000312174 | fastq.gz | 1.3 GB | ||
| EGAF50000312175 | fastq.gz | 721.2 MB | ||
| EGAF50000312176 | fastq.gz | 866.5 MB | ||
| EGAF50000312177 | fastq.gz | 1.5 GB | ||
| EGAF50000312178 | fastq.gz | 1.5 GB | ||
| EGAF50000312179 | fastq.gz | 1.2 GB | ||
| EGAF50000312180 | fastq.gz | 616.2 MB | ||
| EGAF50000312181 | fastq.gz | 1.1 GB | ||
| EGAF50000312182 | fastq.gz | 1.5 GB | ||
| EGAF50000312183 | fastq.gz | 1.5 GB | ||
| 95 Files (104.6 GB) | ||||