LuCaP cell line ChIP-seq
ChIP-seq of 2 LuCaP cell lines with different factors. LuCaP cell line 189.4 was ChIP-sequenced for 6 factors with different conditions as well as the input DNA (n=31 in total). LuCaP 189.4 ChIP-sequence experiments include; 3 H3K27ac/DMSO, 3 H3K27ac/vorinostat, 3 H3K27ac/dexamethasone, 3 H3K27ac/dexamethasone/vorinostat, 3 GR dexamethasone, 3 GR dexamethasone/vorinostat, 3 HDAC3/DMSO, 3 AR, 3 FOXA1, 3 H3K27ac and 1 input sample. LuCaP 35 ChIP-sequence experiments as well as input include (n=10 in total); 3 H3K27ac, 3 AR, 3 FOXA1 and 1 input sample. All 41 samples were sequenced using paired-end reads on Illumina NovaSeq 6000. Each sample has 2 fastq files, one for the forward and reverse read, respectively.
- 07/04/2025
- 41 samples
- DAC: EGAC50000000055
- Technology: Illumina NovaSeq 6000
Netherlands Cancer Institute - Antoni van Leeuwenhoek (NKI-AVL) general policy
Data is available under reasonable request. All data requests will be reviewed by the NKI IRB and must be supported by the Principal Investigator of the study. The researcher will need to sign a data access agreement with the NKI after approval.
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS50000000917 | Epigenetics |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Located in | |
|---|---|---|---|---|
| EGAF00008664060 | fastq.gz | 323.1 MB | ||
| EGAF00008664061 | fastq.gz | 292.6 MB | ||
| EGAF00008664062 | fastq.gz | 263.7 MB | ||
| EGAF00008664063 | fastq.gz | 233.7 MB | ||
| EGAF00008664064 | fastq.gz | 240.4 MB | ||
| EGAF00008664065 | fastq.gz | 320.0 MB | ||
| EGAF00008664066 | fastq.gz | 302.2 MB | ||
| EGAF00008664067 | fastq.gz | 333.5 MB | ||
| EGAF00008664068 | fastq.gz | 273.3 MB | ||
| EGAF00008664069 | fastq.gz | 259.0 MB | ||
| EGAF00008664070 | fastq.gz | 864.1 MB | ||
| EGAF00008664071 | fastq.gz | 381.1 MB | ||
| EGAF00008664072 | fastq.gz | 368.3 MB | ||
| EGAF00008664073 | fastq.gz | 1.4 GB | ||
| EGAF00008664074 | fastq.gz | 1.4 GB | ||
| EGAF00008664075 | fastq.gz | 1.6 GB | ||
| EGAF00008664076 | fastq.gz | 1.3 GB | ||
| EGAF00008664077 | fastq.gz | 947.8 MB | ||
| EGAF00008664078 | fastq.gz | 1.4 GB | ||
| EGAF00008664079 | fastq.gz | 312.9 MB | ||
| EGAF00008664080 | fastq.gz | 1.3 GB | ||
| EGAF00008664081 | fastq.gz | 1.4 GB | ||
| EGAF00008664082 | fastq.gz | 984.0 MB | ||
| EGAF00008664084 | fastq.gz | 1.4 GB | ||
| EGAF00008664086 | fastq.gz | 1.7 GB | ||
| EGAF00008664087 | fastq.gz | 1.4 GB | ||
| EGAF00008664090 | fastq.gz | 1.4 GB | ||
| EGAF00008664092 | fastq.gz | 307.2 MB | ||
| EGAF00008664101 | fastq.gz | 1.1 GB | ||
| EGAF00008664102 | fastq.gz | 303.7 MB | ||
| EGAF00008664103 | fastq.gz | 1.1 GB | ||
| EGAF00008664105 | fastq.gz | 1.2 GB | ||
| EGAF00008664106 | fastq.gz | 804.7 MB | ||
| EGAF00008664107 | fastq.gz | 1.3 GB | ||
| EGAF00008664108 | fastq.gz | 1.2 GB | ||
| EGAF00008664109 | fastq.gz | 266.9 MB | ||
| EGAF00008664110 | fastq.gz | 1.3 GB | ||
| EGAF00008664111 | fastq.gz | 1.2 GB | ||
| EGAF00008664112 | fastq.gz | 1.2 GB | ||
| EGAF00008664113 | fastq.gz | 1.2 GB | ||
| EGAF00008664115 | fastq.gz | 1.1 GB | ||
| EGAF00008664116 | fastq.gz | 1.4 GB | ||
| EGAF00008664117 | fastq.gz | 1.2 GB | ||
| EGAF00008664119 | fastq.gz | 1.4 GB | ||
| EGAF00008664120 | fastq.gz | 1.2 GB | ||
| EGAF00008664122 | fastq.gz | 1.4 GB | ||
| EGAF00008664123 | fastq.gz | 1.0 GB | ||
| EGAF00008664124 | fastq.gz | 297.5 MB | ||
| EGAF00008664125 | fastq.gz | 1.1 GB | ||
| EGAF00008664126 | fastq.gz | 1.2 GB | ||
| EGAF00008664130 | fastq.gz | 1.3 GB | ||
| EGAF00008664134 | fastq.gz | 254.7 MB | ||
| EGAF00008664135 | fastq.gz | 1.3 GB | ||
| EGAF00008664137 | fastq.gz | 767.0 MB | ||
| EGAF00008664138 | fastq.gz | 1.4 GB | ||
| EGAF00008664139 | fastq.gz | 1.4 GB | ||
| EGAF00008664140 | fastq.gz | 331.8 MB | ||
| EGAF00008664143 | fastq.gz | 1.2 GB | ||
| EGAF00008664147 | fastq.gz | 1.1 GB | ||
| EGAF00008664151 | fastq.gz | 1.3 GB | ||
| EGAF00008664323 | fastq.gz | 1.3 GB | ||
| EGAF00008664324 | fastq.gz | 1.2 GB | ||
| EGAF00008664325 | fastq.gz | 1.3 GB | ||
| EGAF00008664369 | fastq.gz | 902.6 MB | ||
| EGAF00008664371 | fastq.gz | 1.2 GB | ||
| EGAF00008664385 | fastq.gz | 1.3 GB | ||
| EGAF00008664386 | fastq.gz | 1.1 GB | ||
| EGAF00008664387 | fastq.gz | 1.3 GB | ||
| EGAF00008664389 | fastq.gz | 263.9 MB | ||
| EGAF00008664409 | fastq.gz | 1.3 GB | ||
| EGAF00008669828 | fastq.gz | 997.5 MB | ||
| EGAF00008669830 | fastq.gz | 1.4 GB | ||
| EGAF00008669831 | fastq.gz | 1.2 GB | ||
| EGAF00008669832 | fastq.gz | 1.1 GB | ||
| EGAF00008669833 | fastq.gz | 1.0 GB | ||
| EGAF00008669834 | fastq.gz | 1.0 GB | ||
| EGAF00008669835 | fastq.gz | 1.5 GB | ||
| EGAF00008669837 | fastq.gz | 1.4 GB | ||
| EGAF00008669838 | fastq.gz | 1.0 GB | ||
| EGAF00008669864 | fastq.gz | 1.2 GB | ||
| EGAF00008669868 | fastq.gz | 1.5 GB | ||
| EGAF00008669869 | fastq.gz | 1.0 GB | ||
| 82 Files (82.0 GB) | ||||