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Long read whole genome sequencing data from brain postmortem tissue

Dataset consisting of 172 whole genome sequencing runs from healthy controls and Parkinson's disease patients. The data was sequenced on Oxford Nanopore (PromethION) platform. The data has been mapped to T2T-CHM13v2.0 reference genome. The data processing pipeline is available on the following link: [https://zenodo.org/records/13385065](https://zenodo.org/records/13385065). The data is in CRAM format and subet of donors also have information on C (hydroxy)methylation (MM and ML tag). The reads are also phased (HP tag).

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This policy applies to the access to and transfer of VIB research datasets that contain non-anonymous Personal Data which are subject to the provisions of the General Data Protection Regulation (EU) 2016/679.

Applicability This policy applies to the access to and transfer of VIB research datasets that contain non-anonymous Personal Data which are subject to the provisions of the General Data Protection Regulation (EU) 2016/679. Access/transfer conditions - The access/transfer is subject to approval by the VIB Data Access Committee. - The proposed research purpose should not be incompatible with the primary research purpose for which the data were originally generated. - The Recipient shall have the necessary competence to handle such datasets. - The Recipient shall have in place adequate safeguards for the protection of Personal Data. - Access is subject to a Data Transfer/Access Agreement which will be managed by VIB Innovation & Business. - The Data Transfer/Access will be limited to the Data that are necessary for the proposed research. Access/transfer procedure - Requests to access or obtain non-anonymous datasets should be submitted to dac@vib.be with a copy to the responsible scientist that has uploaded the dataset onto the repository. - The Requestor must fill in an online request form that will gather amongst other the following information: o Name, affiliation (legal entity) and contact information of the requesting recipient party. o Reference to the specific dataset(s) for which access or transfer is requested. o Description of the research purpose for which the data will be used. - The VIB Data Access Committee will take a decision to approve access/transfer within 14 days upon receipt of the request, involving the responsible scientist. - Data access will be given / Data will be transferred subject to and after completion of a Data Transfer/Access Agreement.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000000921 Whole Genome Sequencing

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
EGAF50000329360 cram 33.9 GB
EGAF50000329361 cram 48.8 GB
EGAF50000329362 cram 31.3 GB
EGAF50000329363 cram 25.5 GB
EGAF50000329364 cram 56.1 GB
EGAF50000329365 cram 69.9 GB
EGAF50000329366 cram 104.8 GB
EGAF50000329367 cram 101.2 GB
EGAF50000329368 cram 39.6 GB
EGAF50000329369 cram 91.4 GB
EGAF50000329370 cram 48.3 GB
EGAF50000329371 cram 27.0 GB
EGAF50000329372 cram 80.0 GB
EGAF50000329373 cram 84.4 GB
EGAF50000329374 cram 78.2 GB
EGAF50000329375 cram 51.6 GB
EGAF50000329376 cram 41.5 GB
EGAF50000329377 cram 64.4 GB
EGAF50000329378 cram 65.6 GB
EGAF50000329379 cram 85.1 GB
EGAF50000329380 cram 87.6 GB
EGAF50000329381 cram 75.9 GB
EGAF50000329382 cram 56.5 GB
EGAF50000329383 cram 41.8 GB
EGAF50000329384 cram 30.8 GB
EGAF50000329385 cram 59.1 GB
EGAF50000329386 cram 35.8 GB
EGAF50000329387 cram 50.6 GB
EGAF50000329388 cram 90.9 GB
EGAF50000329389 cram 59.0 GB
EGAF50000329390 cram 68.6 GB
EGAF50000329391 cram 29.8 GB
EGAF50000329392 cram 64.9 GB
EGAF50000329393 cram 68.8 GB
EGAF50000329394 cram 69.4 GB
EGAF50000329395 cram 52.8 GB
EGAF50000329396 cram 74.2 GB
EGAF50000329397 cram 71.4 GB
EGAF50000329398 cram 68.2 GB
EGAF50000329399 cram 23.0 GB
EGAF50000329400 cram 58.6 GB
EGAF50000329401 cram 48.1 GB
EGAF50000329402 cram 59.9 GB
EGAF50000329403 cram 75.5 GB
EGAF50000329404 cram 71.9 GB
EGAF50000329405 cram 44.6 GB
EGAF50000329406 cram 34.6 GB
EGAF50000329407 cram 50.4 GB
EGAF50000329408 cram 50.0 GB
EGAF50000329409 cram 40.4 GB
EGAF50000329410 cram 28.9 GB
EGAF50000329411 cram 41.3 GB
EGAF50000329412 cram 32.5 GB
EGAF50000329413 cram 46.3 GB
EGAF50000329414 cram 48.9 GB
EGAF50000329415 cram 67.7 GB
EGAF50000329416 cram 64.2 GB
EGAF50000329417 cram 30.8 GB
EGAF50000329418 cram 63.0 GB
EGAF50000329419 cram 33.0 GB
EGAF50000329420 cram 46.1 GB
EGAF50000329421 cram 56.6 GB
EGAF50000329422 cram 70.3 GB
EGAF50000329423 cram 51.2 GB
EGAF50000329424 cram 39.9 GB
EGAF50000329425 cram 45.7 GB
EGAF50000329426 cram 20.4 GB
EGAF50000329427 cram 37.8 GB
EGAF50000329428 cram 42.5 GB
EGAF50000329429 cram 35.1 GB
EGAF50000329430 cram 57.7 GB
EGAF50000329431 cram 44.7 GB
EGAF50000329432 cram 34.3 GB
EGAF50000329433 cram 63.7 GB
EGAF50000329434 cram 43.7 GB
EGAF50000329435 cram 41.0 GB
EGAF50000329436 cram 55.2 GB
EGAF50000329437 cram 42.6 GB
EGAF50000329438 cram 28.6 GB
EGAF50000329439 cram 37.1 GB
EGAF50000329440 cram 36.9 GB
EGAF50000329441 cram 35.5 GB
EGAF50000329442 cram 33.8 GB
EGAF50000329443 cram 69.7 GB
EGAF50000329444 cram 45.8 GB
EGAF50000329445 cram 37.9 GB
EGAF50000329446 cram 39.6 GB
EGAF50000329447 cram 24.8 GB
EGAF50000329448 cram 26.7 GB
EGAF50000329449 cram 40.7 GB
EGAF50000329450 cram 24.1 GB
EGAF50000329451 cram 22.5 GB
EGAF50000329452 cram 42.3 GB
EGAF50000329453 cram 34.2 GB
EGAF50000329454 cram 73.4 GB
EGAF50000329455 cram 55.1 GB
EGAF50000329456 cram 82.2 GB
EGAF50000329457 cram 54.5 GB
EGAF50000329458 cram 56.4 GB
EGAF50000329459 cram 70.4 GB
EGAF50000329460 cram 61.4 GB
EGAF50000329461 cram 60.9 GB
EGAF50000329462 cram 65.9 GB
EGAF50000329463 cram 39.7 GB
EGAF50000329464 cram 76.1 GB
EGAF50000329465 cram 53.6 GB
EGAF50000329466 cram 52.7 GB
EGAF50000329467 cram 54.2 GB
EGAF50000329468 cram 38.5 GB
EGAF50000329469 cram 67.2 GB
EGAF50000329470 cram 43.2 GB
EGAF50000329471 cram 59.6 GB
EGAF50000329472 cram 64.3 GB
EGAF50000329473 cram 66.9 GB
EGAF50000329474 cram 50.2 GB
EGAF50000329475 cram 54.4 GB
EGAF50000329476 cram 64.2 GB
EGAF50000329477 cram 57.3 GB
EGAF50000329478 cram 51.7 GB
EGAF50000329479 cram 42.3 GB
EGAF50000329480 cram 36.8 GB
EGAF50000329481 cram 60.9 GB
EGAF50000329482 cram 65.2 GB
EGAF50000329483 cram 38.2 GB
EGAF50000329484 cram 40.7 GB
EGAF50000329485 cram 53.4 GB
EGAF50000329486 cram 59.7 GB
EGAF50000329487 cram 33.9 GB
EGAF50000329488 cram 46.1 GB
EGAF50000329489 cram 53.3 GB
EGAF50000329490 cram 62.6 GB
EGAF50000329491 cram 63.6 GB
EGAF50000329492 cram 45.4 GB
EGAF50000329493 cram 53.1 GB
EGAF50000329494 cram 97.1 GB
EGAF50000329495 cram 52.7 GB
EGAF50000329496 cram 80.1 GB
EGAF50000329497 cram 34.2 GB
EGAF50000329498 cram 69.2 GB
EGAF50000329499 cram 76.7 GB
EGAF50000329500 cram 58.7 GB
EGAF50000329501 cram 64.7 GB
EGAF50000329502 cram 60.4 GB
EGAF50000329503 cram 50.2 GB
EGAF50000329504 cram 43.6 GB
EGAF50000329505 cram 42.1 GB
EGAF50000329506 cram 83.6 GB
EGAF50000329507 cram 61.1 GB
EGAF50000329508 cram 71.4 GB
EGAF50000329509 cram 76.1 GB
EGAF50000329510 cram 46.9 GB
EGAF50000329511 cram 52.0 GB
EGAF50000329512 cram 60.7 GB
EGAF50000329513 cram 51.5 GB
EGAF50000329514 cram 57.0 GB
EGAF50000329515 cram 47.4 GB
EGAF50000329516 cram 47.4 GB
EGAF50000329517 cram 59.6 GB
EGAF50000329518 cram 38.3 GB
EGAF50000329519 cram 54.0 GB
EGAF50000329520 cram 49.7 GB
EGAF50000329521 cram 37.5 GB
EGAF50000329522 cram 43.0 GB
EGAF50000329523 cram 85.5 GB
EGAF50000329524 cram 51.4 GB
EGAF50000329525 cram 51.8 GB
EGAF50000329526 cram 72.1 GB
EGAF50000329527 cram 55.4 GB
EGAF50000329528 cram 75.0 GB
EGAF50000329529 cram 58.7 GB
EGAF50000329530 cram 67.1 GB
EGAF50000329531 cram 80.1 GB
172 Files (9.3 TB)