About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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mt-scATAC-seq data and analysis

Data and analysis of mt-scATAC-seq assay of Lin- CD34+ sorted live cells from bone marrow tissue of 4 patients with AML (before treatment with decitabine). Data files are paired-end reads in FASTQ format from the NextSeq 2000 sequencer. Analysis files are outputs from Cellranger ATAC: .h5 peak matrix file, atac_fragments.tsv.gz file and its index.

Request Access

DUO:0000012
version: 2021-02-23

research specific restrictions

This data use modifier indicates that use is limited to studies of a certain research type.

DUO:0000025
version: 2021-02-23

time limit on use

This data use modifier indicates that use is approved for a specific number of months.

Modifiers60

DUO:0000026
version: 2021-02-23

user specific restriction

This data use modifier indicates that use is limited to use by approved users.

DUO:0000027
version: 2021-02-23

project specific restriction

This data use modifier indicates that use is limited to use within an approved project.

DUO:0000046
version: 2021-02-23

non-commercial use only

This data use modifier indicates that use of the data is limited to not-for-profit use.

BC Cancer, part of the Provincial Health Services Authority - Data Access Policy

Access to this data is controlled. There are a number of steps that a researcher must take to obtain access to this data, including execution of a Data Access Agreement between the institutions. The process is overseen by the Technology Development Office; please contact our general email address TDOadmin@phsa.ca. Please only click the "request data" button on the EGA website after a Data Access Agreement is fully executed.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000000936 Epigenetics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000334408 fastq.gz 211.7 MB
EGAF50000334409 fastq.gz 614.5 MB
EGAF50000334410 fastq.gz 618.4 MB
EGAF50000334411 fastq.gz 261.2 MB
EGAF50000334413 fastq.gz 1.1 GB
EGAF50000334416 tbi 825.1 kB
EGAF50000334417 fastq.gz 1.1 GB
EGAF50000334418 fastq.gz 710.2 MB
EGAF50000334419 fastq.gz 1.5 GB
EGAF50000334420 fastq.gz 1.5 GB
EGAF50000334421 fastq.gz 1.1 GB
EGAF50000334422 fastq.gz 1.1 GB
EGAF50000334423 fastq.gz 701.1 MB
EGAF50000334424 fastq.gz 358.9 MB
EGAF50000334425 fastq.gz 356.8 MB
EGAF50000334426 fastq.gz 472.3 MB
EGAF50000334427 tbi 906.1 kB
EGAF50000334428 fastq.gz 1.1 GB
EGAF50000334429 fastq.gz 670.8 MB
EGAF50000334430 h5 112.3 MB
EGAF50000334431 tsv.gz 1.5 GB
EGAF50000334432 fastq.gz 1.5 GB
EGAF50000334433 fastq.gz 1.5 GB
EGAF50000334435 fastq.gz 693.4 MB
EGAF50000334436 fastq.gz 1.1 GB
EGAF50000334437 fastq.gz 470.3 MB
EGAF50000334438 fastq.gz 176.2 MB
EGAF50000334439 fastq.gz 1.1 GB
EGAF50000334440 fastq.gz 453.4 MB
EGAF50000334441 fastq.gz 1.3 GB
EGAF50000334442 fastq.gz 376.4 MB
EGAF50000334443 fastq.gz 1.5 GB
EGAF50000334444 fastq.gz 1.5 GB
EGAF50000334445 fastq.gz 1.5 GB
EGAF50000334446 fastq.gz 1.1 GB
EGAF50000334447 fastq.gz 1.1 GB
EGAF50000334448 fastq.gz 1.1 GB
EGAF50000334449 fastq.gz 918.4 MB
EGAF50000334450 fastq.gz 376.0 MB
EGAF50000334451 fastq.gz 1.1 GB
EGAF50000334452 fastq.gz 1.5 GB
EGAF50000334453 fastq.gz 1.1 GB
EGAF50000334454 fastq.gz 792.6 MB
EGAF50000334455 fastq.gz 461.9 MB
EGAF50000334456 fastq.gz 1.3 GB
EGAF50000334457 fastq.gz 783.7 MB
EGAF50000334458 fastq.gz 661.9 MB
EGAF50000334459 fastq.gz 216.2 MB
EGAF50000334460 fastq.gz 1.5 GB
EGAF50000334461 fastq.gz 1.3 GB
EGAF50000334462 fastq.gz 674.5 MB
EGAF50000334463 fastq.gz 1.6 GB
EGAF50000334464 fastq.gz 1.1 GB
EGAF50000334465 fastq.gz 1.0 GB
EGAF50000334466 fastq.gz 922.7 MB
EGAF50000334467 fastq.gz 1.5 GB
EGAF50000334468 tbi 747.6 kB
EGAF50000334469 fastq.gz 1.4 GB
EGAF50000334470 fastq.gz 1.1 GB
EGAF50000334471 fastq.gz 470.7 MB
EGAF50000334472 fastq.gz 1.5 GB
EGAF50000334473 fastq.gz 1.0 GB
EGAF50000334474 fastq.gz 702.1 MB
EGAF50000334475 fastq.gz 1.5 GB
EGAF50000334476 fastq.gz 1.4 GB
EGAF50000334477 fastq.gz 1.3 GB
EGAF50000334478 fastq.gz 684.7 MB
EGAF50000334479 fastq.gz 551.3 MB
EGAF50000334480 fastq.gz 1.5 GB
EGAF50000334481 fastq.gz 1.1 GB
EGAF50000334482 fastq.gz 1.1 GB
EGAF50000334483 fastq.gz 1.2 GB
EGAF50000334484 fastq.gz 1.2 GB
EGAF50000334485 fastq.gz 217.9 MB
EGAF50000334486 fastq.gz 105.1 MB
EGAF50000334487 fastq.gz 1.4 GB
EGAF50000334488 fastq.gz 700.2 MB
EGAF50000334489 fastq.gz 1.1 GB
EGAF50000334490 h5 95.4 MB
EGAF50000334491 fastq.gz 1.4 GB
EGAF50000334492 fastq.gz 51.9 MB
EGAF50000334493 fastq.gz 639.4 MB
EGAF50000334494 fastq.gz 106.1 MB
EGAF50000334495 fastq.gz 1.1 GB
EGAF50000334496 fastq.gz 1.4 GB
EGAF50000334497 tsv.gz 1.2 GB
EGAF50000334498 fastq.gz 1.0 GB
EGAF50000334499 fastq.gz 707.7 MB
EGAF50000334500 fastq.gz 654.9 MB
EGAF50000334501 fastq.gz 311.8 MB
EGAF50000334502 fastq.gz 685.0 MB
EGAF50000334503 fastq.gz 1.5 GB
EGAF50000334504 fastq.gz 1.3 GB
EGAF50000334505 fastq.gz 1.1 GB
EGAF50000334506 fastq.gz 525.7 MB
EGAF50000334507 fastq.gz 25.9 MB
EGAF50000334508 fastq.gz 1.5 GB
EGAF50000334509 fastq.gz 589.5 MB
EGAF50000334510 fastq.gz 1.1 GB
EGAF50000334511 fastq.gz 557.3 MB
EGAF50000334512 tsv.gz 1.4 GB
EGAF50000334513 fastq.gz 1.2 GB
EGAF50000334514 fastq.gz 1.4 GB
EGAF50000334515 tbi 891.0 kB
EGAF50000334516 h5 81.7 MB
EGAF50000334517 fastq.gz 1.3 GB
EGAF50000334518 fastq.gz 692.5 MB
EGAF50000334519 fastq.gz 1.1 GB
EGAF50000334520 fastq.gz 1.4 GB
EGAF50000334521 fastq.gz 1.5 GB
EGAF50000334522 fastq.gz 1.1 GB
EGAF50000334523 fastq.gz 1.3 GB
EGAF50000334524 fastq.gz 1.5 GB
EGAF50000334525 fastq.gz 1.1 GB
EGAF50000334526 fastq.gz 1.5 GB
EGAF50000334527 fastq.gz 702.9 MB
EGAF50000334528 fastq.gz 1.5 GB
EGAF50000334529 fastq.gz 396.9 MB
EGAF50000334530 fastq.gz 1.1 GB
EGAF50000334531 fastq.gz 518.8 MB
EGAF50000334532 fastq.gz 1.1 GB
EGAF50000334533 fastq.gz 696.3 MB
EGAF50000334534 h5 63.9 MB
EGAF50000334535 fastq.gz 693.9 MB
EGAF50000334536 fastq.gz 1.2 GB
EGAF50000334537 fastq.gz 1.5 GB
EGAF50000334538 tsv.gz 948.3 MB
EGAF50000334539 fastq.gz 1.6 GB
EGAF50000334540 fastq.gz 146.5 MB
EGAF50000334541 fastq.gz 1.4 GB
EGAF50000334542 fastq.gz 1.5 GB
EGAF50000334543 fastq.gz 676.4 MB
EGAF50000334544 fastq.gz 715.4 MB
EGAF50000334545 fastq.gz 725.3 MB
EGAF50000334546 fastq.gz 994.1 MB
EGAF50000334547 fastq.gz 1.5 GB
136 Files (125.4 GB)