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PCR-Free Shallow Whole Genome Sequencing for Chromosomal Copy Number Detection

Archival peripheral blood or bone marrow plasma samples from non small-cell lung cancer, B-cell lymphoma and acute myeloid leukemia patients, and healthy donors. Shallow whole genome sequencing of 100 Samples by two distinct library preparation methods (PCR = 45, PCR-Free = 55). sWGS done for Chromosomal CN detection.

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Data originating from patient samples

The Amsterdam UMC, tumor genome analysis core, allows access to published datasets upon written application and signature of a Data Access Agreement (DAA). In addition, applications to clinical datasets require approval by a Data Access Committee (DAC), who assess whether the proposed work is allowed given patient consent, as well as the scientific purpose. To aid this process we ask you to provide the information below. Requests will be prioritised according to novelty of the research question. Applications with insufficient detail on objectives, justification, and methods/planned analyses are unlikely to be accepted. 1.Reference number for the dataset 2.Full legal name and address of university/institution 3.Name(s) of the Principle Investigator who will use the data: 4.Name(s) and job title(s) of any other investigators who will use the data: 5.Please provide a minimum of one reference to a publication that can be found on PubMed and where the Principle Investigator is an author: 6.How will the data be stored and where will it be stored? 7.What is the proposed study title and what are the objectives and outcomes of the study in which the data will be used 8.Please provide a brief justification or rationale for the proposed study (max 250 words) 9.Please provide a brief description of planned data analyses (max 250 words): 10.Will the results arising from use of the data be used for the creation of products for sale or for any commercial purpose?

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001004692 Cancer Genomics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
EGAF50000350236 bam 3.5 GB
EGAF50000350237 bam 3.9 GB
EGAF50000350238 bam 6.2 GB
EGAF50000350239 bam 6.1 GB
EGAF50000350240 bam 5.6 GB
EGAF50000350241 bam 5.8 GB
EGAF50000350242 bam 2.9 GB
EGAF50000350243 bam 5.5 GB
EGAF50000350244 bam 5.2 GB
EGAF50000350245 bam 3.9 GB
EGAF50000350246 bam 4.4 GB
EGAF50000350247 bam 5.1 GB
EGAF50000350248 bam 5.3 GB
EGAF50000350249 bam 7.2 GB
EGAF50000350250 bam 2.7 GB
EGAF50000350251 bam 7.7 GB
EGAF50000350252 bam 3.6 GB
EGAF50000350253 bam 7.9 GB
EGAF50000350254 bam 6.9 GB
EGAF50000350255 bam 6.6 GB
EGAF50000350256 bam 10.2 GB
EGAF50000350257 bam 3.8 GB
EGAF50000350258 bam 3.9 GB
EGAF50000350259 bam 5.6 GB
EGAF50000350260 bam 6.6 GB
EGAF50000350261 bam 4.2 GB
EGAF50000350262 bam 6.2 GB
EGAF50000350263 bam 2.8 GB
EGAF50000350264 bam 4.0 GB
EGAF50000350265 bam 1.5 GB
EGAF50000350266 bam 2.9 GB
EGAF50000350267 bam 5.1 GB
EGAF50000350268 bam 4.4 GB
EGAF50000350269 bam 1.8 GB
EGAF50000350270 bam 4.1 GB
EGAF50000350271 bam 1.8 GB
EGAF50000350272 bam 2.7 GB
EGAF50000350273 bam 1.5 GB
EGAF50000350274 bam 5.4 GB
EGAF50000350275 bam 4.4 GB
EGAF50000350276 bam 4.4 GB
EGAF50000350277 bam 6.9 GB
EGAF50000350278 bam 4.0 GB
EGAF50000350279 bam 7.0 GB
EGAF50000350280 bam 4.0 GB
EGAF50000350281 bam 3.5 GB
EGAF50000350282 bam 6.8 GB
EGAF50000350283 bam 3.7 GB
EGAF50000350284 bam 3.9 GB
EGAF50000350285 bam 6.5 GB
EGAF50000350286 bam 5.3 GB
EGAF50000350287 bam 6.3 GB
EGAF50000350288 bam 3.0 GB
EGAF50000350289 bam 2.7 GB
EGAF50000350290 bam 6.7 GB
EGAF50000350291 bam 3.2 GB
EGAF50000350292 bam 6.2 GB
EGAF50000350293 bam 4.3 GB
EGAF50000350294 bam 6.0 GB
EGAF50000350295 bam 4.6 GB
EGAF50000350296 bam 2.0 GB
EGAF50000350297 bam 6.2 GB
EGAF50000350298 bam 3.8 GB
EGAF50000350299 bam 1.7 GB
EGAF50000350300 bam 5.4 GB
EGAF50000350301 bam 4.3 GB
EGAF50000350302 bam 3.8 GB
EGAF50000350303 bam 2.9 GB
EGAF50000350304 bam 9.5 GB
EGAF50000350305 bam 7.5 GB
EGAF50000350306 bam 2.1 GB
EGAF50000350307 bam 2.8 GB
EGAF50000350308 bam 2.2 GB
EGAF50000350309 bam 5.3 GB
EGAF50000350310 bam 1.0 GB
EGAF50000350311 bam 3.6 GB
EGAF50000350312 bam 2.9 GB
EGAF50000350313 bam 3.7 GB
EGAF50000350314 bam 6.9 GB
EGAF50000350315 bam 6.1 GB
EGAF50000350316 bam 3.4 GB
EGAF50000350317 bam 2.6 GB
EGAF50000350318 bam 5.7 GB
EGAF50000350319 bam 5.8 GB
EGAF50000350320 bam 3.8 GB
EGAF50000350321 bam 6.5 GB
EGAF50000350322 bam 4.4 GB
EGAF50000350323 bam 8.4 GB
EGAF50000350324 bam 8.3 GB
EGAF50000350325 bam 4.0 GB
EGAF50000350326 bam 8.2 GB
EGAF50000350327 bam 6.7 GB
EGAF50000350328 bam 2.5 GB
EGAF50000350329 bam 6.3 GB
EGAF50000350330 bam 5.9 GB
EGAF50000350331 bam 6.3 GB
EGAF50000350332 bam 8.4 GB
EGAF50000350333 bam 5.8 GB
EGAF50000350334 bam 7.1 GB
EGAF50000350335 bam 6.0 GB
100 Files (487.8 GB)