About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
Need Help?

CLUSTER Consortium RNAseq CD4 Dataset of pre-methotrexate UK JIA patients cohort

This is the RNAseq CD4 dataset (paired FASTQ files, n = 86 paired files) generated from pre-methotrexate treatment JIA patients cohort samples. CD4 cells were sorted from isolated total PBMC by cell sorter (BD FACSAriaTM III, BD Biosciences). Clinical metadata is also included in this dataset. Samples were sequenced on the NovaSeq6000 instrument (Illumina, San Diego, US) at 300pM, using a 100bp paired read run with corresponding 8bp dual sample index and 5bp or 8bp unique molecular index reads. Run data were demultiplexed and converted to FASTQ files using Illumina’s BCL Convert Software v3.75.

Request Access

DUO:0000026
version: 2021-02-23

user specific restriction

This data use modifier indicates that use is limited to use by approved users.

DUO:0000027
version: 2021-02-23

project specific restriction

This data use modifier indicates that use is limited to use within an approved project.

DUO:0000028
version: 2021-02-23

institution specific restriction

This data use modifier indicates that use is limited to use within an approved institution.

DUO:0000042
version: 2021-02-23

general research use

This data use permission indicates that use is allowed for general research use for any research purpose.

CLUSTER Consortium Data Access Policy

Access to CLUSTER data is controlled. Please only click the "request data" button on the EGA website after a Data Access Agreement is fully executed.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000000995 RNASeq
  • Updated with PMID Updated the library pairing type from single to paired
  • Dataset Released

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000368170 fastq.gz 2.7 GB
EGAF50000368171 fastq.gz 2.8 GB
EGAF50000368186 fastq.gz 4.5 GB
EGAF50000368187 fastq.gz 4.7 GB
EGAF50000368199 fastq.gz 3.8 GB
EGAF50000368200 fastq.gz 4.0 GB
EGAF50000368207 fastq.gz 5.8 GB
EGAF50000368208 fastq.gz 6.1 GB
EGAF50000368219 fastq.gz 2.1 GB
EGAF50000368220 fastq.gz 2.2 GB
EGAF50000368227 fastq.gz 3.0 GB
EGAF50000368229 fastq.gz 3.1 GB
EGAF50000368237 fastq.gz 1.5 GB
EGAF50000368238 fastq.gz 1.5 GB
EGAF50000368247 fastq.gz 2.3 GB
EGAF50000368248 fastq.gz 2.3 GB
EGAF50000368251 fastq.gz 1.9 GB
EGAF50000368252 fastq.gz 2.0 GB
EGAF50000368263 fastq.gz 1.9 GB
EGAF50000368264 fastq.gz 1.9 GB
EGAF50000368273 fastq.gz 1.9 GB
EGAF50000368274 fastq.gz 2.0 GB
EGAF50000368278 fastq.gz 1.2 GB
EGAF50000368279 fastq.gz 1.2 GB
EGAF50000368293 fastq.gz 1.1 GB
EGAF50000368294 fastq.gz 1.1 GB
EGAF50000368301 fastq.gz 2.4 GB
EGAF50000368302 fastq.gz 2.5 GB
EGAF50000368309 fastq.gz 2.3 GB
EGAF50000368310 fastq.gz 2.4 GB
EGAF50000368317 fastq.gz 2.1 GB
EGAF50000368319 fastq.gz 2.2 GB
EGAF50000368325 fastq.gz 1.4 GB
EGAF50000368327 fastq.gz 1.4 GB
EGAF50000368335 fastq.gz 2.2 GB
EGAF50000368336 fastq.gz 2.2 GB
EGAF50000368345 fastq.gz 2.0 GB
EGAF50000368346 fastq.gz 2.0 GB
EGAF50000368355 fastq.gz 2.3 GB
EGAF50000368356 fastq.gz 2.3 GB
EGAF50000368365 fastq.gz 1.6 GB
EGAF50000368366 fastq.gz 1.6 GB
EGAF50000368372 fastq.gz 620.0 MB
EGAF50000368374 fastq.gz 638.4 MB
EGAF50000368381 fastq.gz 1.0 GB
EGAF50000368382 fastq.gz 1.1 GB
EGAF50000368389 fastq.gz 1.5 GB
EGAF50000368390 fastq.gz 1.5 GB
EGAF50000368399 fastq.gz 1.5 GB
EGAF50000368400 fastq.gz 1.6 GB
EGAF50000368409 fastq.gz 1.3 GB
EGAF50000368410 fastq.gz 1.3 GB
EGAF50000368417 fastq.gz 1.2 GB
EGAF50000368419 fastq.gz 1.2 GB
EGAF50000368427 fastq.gz 874.1 MB
EGAF50000368428 fastq.gz 903.0 MB
EGAF50000368437 fastq.gz 3.2 GB
EGAF50000368438 fastq.gz 3.3 GB
EGAF50000368445 fastq.gz 4.2 GB
EGAF50000368448 fastq.gz 4.3 GB
EGAF50000368453 fastq.gz 3.0 GB
EGAF50000368455 fastq.gz 3.0 GB
EGAF50000368465 fastq.gz 1.6 GB
EGAF50000368466 fastq.gz 1.7 GB
EGAF50000368473 fastq.gz 703.1 MB
EGAF50000368474 fastq.gz 720.3 MB
EGAF50000368481 fastq.gz 1.1 GB
EGAF50000368482 fastq.gz 1.1 GB
EGAF50000368489 fastq.gz 1.5 GB
EGAF50000368490 fastq.gz 1.6 GB
EGAF50000368497 fastq.gz 1.9 GB
EGAF50000368498 fastq.gz 2.0 GB
EGAF50000368515 fastq.gz 2.3 GB
EGAF50000368516 fastq.gz 2.3 GB
EGAF50000368523 fastq.gz 2.0 GB
EGAF50000368524 fastq.gz 2.0 GB
EGAF50000368531 fastq.gz 2.6 GB
EGAF50000368532 fastq.gz 2.6 GB
EGAF50000368541 fastq.gz 2.0 GB
EGAF50000368542 fastq.gz 2.1 GB
EGAF50000368551 fastq.gz 3.3 GB
EGAF50000368552 fastq.gz 3.4 GB
EGAF50000368559 fastq.gz 2.2 GB
EGAF50000368560 fastq.gz 2.2 GB
EGAF50000368569 fastq.gz 2.4 GB
EGAF50000368570 fastq.gz 2.4 GB
EGAF50000368577 fastq.gz 2.0 GB
EGAF50000368578 fastq.gz 2.1 GB
EGAF50000368587 fastq.gz 2.4 GB
EGAF50000368588 fastq.gz 2.5 GB
EGAF50000368592 fastq.gz 1.8 GB
EGAF50000368594 fastq.gz 1.8 GB
EGAF50000368601 fastq.gz 2.1 GB
EGAF50000368603 fastq.gz 2.2 GB
EGAF50000368611 fastq.gz 3.0 GB
EGAF50000368612 fastq.gz 3.1 GB
EGAF50000368621 fastq.gz 1.6 GB
EGAF50000368622 fastq.gz 1.7 GB
EGAF50000368631 fastq.gz 2.5 GB
EGAF50000368632 fastq.gz 2.6 GB
EGAF50000368649 fastq.gz 2.1 GB
EGAF50000368650 fastq.gz 2.1 GB
EGAF50000368659 fastq.gz 1.9 GB
EGAF50000368661 fastq.gz 1.9 GB
EGAF50000368669 fastq.gz 1.8 GB
EGAF50000368670 fastq.gz 1.8 GB
EGAF50000368679 fastq.gz 2.3 GB
EGAF50000368680 fastq.gz 2.4 GB
EGAF50000368689 fastq.gz 2.0 GB
EGAF50000368690 fastq.gz 2.1 GB
EGAF50000368699 fastq.gz 2.7 GB
EGAF50000368700 fastq.gz 2.8 GB
EGAF50000368707 fastq.gz 1.9 GB
EGAF50000368709 fastq.gz 1.9 GB
EGAF50000368717 fastq.gz 2.5 GB
EGAF50000368718 fastq.gz 2.6 GB
EGAF50000368727 fastq.gz 2.5 GB
EGAF50000368728 fastq.gz 2.5 GB
EGAF50000368736 fastq.gz 1.4 GB
EGAF50000368738 fastq.gz 1.5 GB
EGAF50000368747 fastq.gz 2.6 GB
EGAF50000368748 fastq.gz 2.7 GB
EGAF50000368756 fastq.gz 1.8 GB
EGAF50000368759 fastq.gz 1.8 GB
EGAF50000368765 fastq.gz 2.6 GB
EGAF50000368766 fastq.gz 2.6 GB
EGAF50000368775 fastq.gz 1.6 GB
EGAF50000368776 fastq.gz 1.6 GB
EGAF50000368786 fastq.gz 3.8 GB
EGAF50000368789 fastq.gz 3.9 GB
EGAF50000368794 fastq.gz 1.0 GB
EGAF50000368795 fastq.gz 1.0 GB
EGAF50000368804 fastq.gz 2.6 GB
EGAF50000368805 fastq.gz 2.6 GB
EGAF50000368814 fastq.gz 2.6 GB
EGAF50000368815 fastq.gz 2.6 GB
EGAF50000368822 fastq.gz 2.3 GB
EGAF50000368824 fastq.gz 2.3 GB
EGAF50000368827 fastq.gz 2.6 GB
EGAF50000368828 fastq.gz 2.7 GB
EGAF50000368837 fastq.gz 1.6 GB
EGAF50000368838 fastq.gz 1.6 GB
EGAF50000368846 fastq.gz 1.9 GB
EGAF50000368848 fastq.gz 1.9 GB
EGAF50000368853 fastq.gz 1.6 GB
EGAF50000368854 fastq.gz 1.6 GB
EGAF50000368863 fastq.gz 1.7 GB
EGAF50000368864 fastq.gz 1.7 GB
EGAF50000368875 fastq.gz 1.7 GB
EGAF50000368876 fastq.gz 1.7 GB
EGAF50000368885 fastq.gz 3.5 GB
EGAF50000368888 fastq.gz 3.6 GB
EGAF50000368895 fastq.gz 1.3 GB
EGAF50000368896 fastq.gz 1.4 GB
EGAF50000368905 fastq.gz 1.4 GB
EGAF50000368907 fastq.gz 1.4 GB
EGAF50000368915 fastq.gz 1.8 GB
EGAF50000368916 fastq.gz 1.8 GB
EGAF50000368925 fastq.gz 1.9 GB
EGAF50000368926 fastq.gz 1.8 GB
EGAF50000368936 fastq.gz 1.8 GB
EGAF50000368937 fastq.gz 1.8 GB
EGAF50000368945 fastq.gz 2.0 GB
EGAF50000368946 fastq.gz 2.0 GB
EGAF50000368955 fastq.gz 2.0 GB
EGAF50000368956 fastq.gz 2.0 GB
EGAF50000368964 fastq.gz 1.9 GB
EGAF50000368968 fastq.gz 1.9 GB
EGAF50000368977 fastq.gz 1.6 GB
EGAF50000368978 fastq.gz 1.6 GB
EGAF50000368990 fastq.gz 2.4 GB
EGAF50000368992 fastq.gz 2.5 GB
EGAF50000369001 xlsx 48.2 kB
173 Files (367.9 GB)