About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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ST lobular manuscript dataset

Spatial transcriptomics analysis for 43 breast cancer lobular samples. Note that there are 2 runs per sample Images and read counts will be made availalble on Zenodo upon publication.

Request Access

BCTL, Institute Jules Bordet & IRIBHM Université Libre de BruxellesBruxelles, Belgium

To whom it may concern,This document refers to the data set, EGAS00001000495, which has been submitted to the European Genome Archive (EGA) for the restricted access by legitimate academic institutions that have agreed to comply with the terms of a Data Access Agreement drafted by Christos Sotiriou and Vincent Detours.There are a number of steps that a researcher must take to obtain access to this data and the process is overseen by our Data Access Committee, called BCTL-IRIBHM (christos.sotiriou@bordet.be; vdetours@ulb.ac.be)Please be advised that David Norman Brown (david.brown@bordet.be) is authorized to upload data to the EGA for archiving and distribution as part of your submission process, which will enable approved researchers to have encrypted access to the data. We can confirm that this submission is consistent with the informed consent of the participants of the study or has been granted ethical approval and is in accordance with the applicable laws and regulations.Sincerely,Christos Sotiriou & Vincent Detours

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000001001 Transcriptome Sequencing

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000370268 fastq.gz 5.0 GB
EGAF50000370269 fastq.gz 516.8 MB
EGAF50000370270 fastq.gz 267.5 MB
EGAF50000370271 fastq.gz 3.7 GB
EGAF50000370272 fastq.gz 1.8 GB
EGAF50000370273 fastq.gz 6.4 GB
EGAF50000370274 fastq.gz 1.0 GB
EGAF50000370275 fastq.gz 2.8 GB
EGAF50000370276 fastq.gz 367.0 MB
EGAF50000370277 fastq.gz 372.9 MB
EGAF50000370278 fastq.gz 446.5 MB
EGAF50000370279 fastq.gz 326.3 MB
EGAF50000370280 fastq.gz 543.1 MB
EGAF50000370281 fastq.gz 579.6 MB
EGAF50000370282 fastq.gz 1.6 GB
EGAF50000370283 fastq.gz 499.1 MB
EGAF50000370284 fastq.gz 450.9 MB
EGAF50000370285 fastq.gz 8.5 GB
EGAF50000370286 fastq.gz 2.9 GB
EGAF50000370287 fastq.gz 1.1 GB
EGAF50000370288 fastq.gz 433.1 MB
EGAF50000370289 fastq.gz 495.5 MB
EGAF50000370290 fastq.gz 485.2 MB
EGAF50000370291 fastq.gz 569.0 MB
EGAF50000370292 fastq.gz 590.1 MB
EGAF50000370293 fastq.gz 521.4 MB
EGAF50000370294 fastq.gz 1.4 GB
EGAF50000370295 fastq.gz 795.3 MB
EGAF50000370296 fastq.gz 804.0 MB
EGAF50000370297 fastq.gz 169.7 MB
EGAF50000370298 fastq.gz 196.7 MB
EGAF50000370299 fastq.gz 251.7 MB
EGAF50000370300 fastq.gz 129.7 MB
EGAF50000370301 fastq.gz 804.8 MB
EGAF50000370302 fastq.gz 140.9 MB
EGAF50000370303 fastq.gz 363.9 MB
EGAF50000370304 fastq.gz 850.1 MB
EGAF50000370305 fastq.gz 367.4 MB
EGAF50000370306 fastq.gz 284.9 MB
EGAF50000370307 fastq.gz 330.2 MB
EGAF50000370308 fastq.gz 337.8 MB
EGAF50000370309 fastq.gz 962.8 MB
EGAF50000370310 fastq.gz 2.3 GB
EGAF50000370311 fastq.gz 281.3 MB
EGAF50000370312 fastq.gz 2.2 GB
EGAF50000370313 fastq.gz 5.6 GB
EGAF50000370314 fastq.gz 741.8 MB
EGAF50000370315 fastq.gz 803.5 MB
EGAF50000370316 fastq.gz 2.2 GB
EGAF50000370317 fastq.gz 1.0 GB
EGAF50000370318 fastq.gz 397.9 MB
EGAF50000370319 fastq.gz 232.4 MB
EGAF50000370320 fastq.gz 169.3 MB
EGAF50000370321 fastq.gz 196.4 MB
EGAF50000370322 fastq.gz 495.0 MB
EGAF50000370323 fastq.gz 522.9 MB
EGAF50000370324 fastq.gz 361.0 MB
EGAF50000370325 fastq.gz 989.3 MB
EGAF50000370326 fastq.gz 374.7 MB
EGAF50000370327 fastq.gz 672.6 MB
EGAF50000370328 fastq.gz 608.9 MB
EGAF50000370329 fastq.gz 1.6 GB
EGAF50000370330 fastq.gz 4.4 GB
EGAF50000370331 fastq.gz 511.4 MB
EGAF50000370332 fastq.gz 1.6 GB
EGAF50000370333 fastq.gz 239.1 MB
EGAF50000370334 fastq.gz 4.5 GB
EGAF50000370335 fastq.gz 1.8 GB
EGAF50000370336 fastq.gz 239.6 MB
EGAF50000370337 fastq.gz 233.9 MB
EGAF50000370338 fastq.gz 1.9 GB
EGAF50000370339 fastq.gz 642.5 MB
EGAF50000370340 fastq.gz 476.6 MB
EGAF50000370341 fastq.gz 1.5 GB
EGAF50000370342 fastq.gz 4.2 GB
EGAF50000370343 fastq.gz 815.9 MB
EGAF50000370344 fastq.gz 2.3 GB
EGAF50000370345 fastq.gz 816.1 MB
EGAF50000370346 fastq.gz 2.3 GB
EGAF50000370347 fastq.gz 450.4 MB
EGAF50000370348 fastq.gz 523.7 MB
EGAF50000370349 fastq.gz 792.0 MB
EGAF50000370350 fastq.gz 750.1 MB
EGAF50000370351 fastq.gz 2.3 GB
EGAF50000370352 fastq.gz 269.6 MB
EGAF50000370353 fastq.gz 286.1 MB
EGAF50000370354 fastq.gz 752.4 MB
EGAF50000370355 fastq.gz 679.6 MB
EGAF50000370356 fastq.gz 342.1 MB
EGAF50000370357 fastq.gz 3.3 GB
EGAF50000370358 fastq.gz 416.8 MB
EGAF50000370359 fastq.gz 459.5 MB
EGAF50000370360 fastq.gz 1.4 GB
EGAF50000370361 fastq.gz 3.8 GB
EGAF50000370362 fastq.gz 448.3 MB
EGAF50000370363 fastq.gz 1.4 GB
EGAF50000370364 fastq.gz 3.9 GB
EGAF50000370365 fastq.gz 508.5 MB
EGAF50000370366 fastq.gz 563.8 MB
EGAF50000370367 fastq.gz 640.9 MB
EGAF50000370368 fastq.gz 640.6 MB
EGAF50000370369 fastq.gz 581.4 MB
EGAF50000370370 fastq.gz 1.8 GB
EGAF50000370371 fastq.gz 5.0 GB
EGAF50000370372 fastq.gz 342.6 MB
EGAF50000370373 fastq.gz 424.1 MB
EGAF50000370374 fastq.gz 1.1 GB
EGAF50000370375 fastq.gz 3.2 GB
EGAF50000370376 fastq.gz 515.2 MB
EGAF50000370377 fastq.gz 4.1 GB
EGAF50000370378 fastq.gz 277.6 MB
EGAF50000370379 fastq.gz 295.7 MB
EGAF50000370380 fastq.gz 1.5 GB
EGAF50000370381 fastq.gz 4.3 GB
EGAF50000370382 fastq.gz 643.3 MB
EGAF50000370383 fastq.gz 608.1 MB
EGAF50000370384 fastq.gz 1.8 GB
EGAF50000370385 fastq.gz 493.9 MB
EGAF50000370386 fastq.gz 484.2 MB
EGAF50000370387 fastq.gz 1.3 GB
EGAF50000370388 fastq.gz 3.7 GB
EGAF50000370389 fastq.gz 448.9 MB
EGAF50000370390 fastq.gz 284.1 MB
EGAF50000370391 fastq.gz 774.0 MB
EGAF50000370392 fastq.gz 2.0 GB
EGAF50000370393 fastq.gz 6.1 GB
EGAF50000370394 fastq.gz 95.1 MB
EGAF50000370395 fastq.gz 256.2 MB
EGAF50000370396 fastq.gz 678.3 MB
EGAF50000370397 fastq.gz 344.9 MB
EGAF50000370398 fastq.gz 371.5 MB
EGAF50000370399 fastq.gz 1.1 GB
EGAF50000370400 fastq.gz 3.1 GB
EGAF50000370401 fastq.gz 136.6 MB
EGAF50000370402 fastq.gz 156.1 MB
EGAF50000370403 fastq.gz 388.3 MB
EGAF50000370404 fastq.gz 1.1 GB
EGAF50000370405 fastq.gz 695.6 MB
EGAF50000370406 fastq.gz 2.0 GB
EGAF50000370407 fastq.gz 280.6 MB
EGAF50000370408 fastq.gz 295.7 MB
EGAF50000370409 fastq.gz 450.1 MB
EGAF50000370410 fastq.gz 3.5 GB
EGAF50000370411 fastq.gz 2.3 GB
EGAF50000370412 fastq.gz 886.1 MB
EGAF50000370413 fastq.gz 4.3 GB
EGAF50000370414 fastq.gz 657.0 MB
EGAF50000370415 fastq.gz 2.0 GB
EGAF50000370416 fastq.gz 5.1 GB
EGAF50000370417 fastq.gz 143.8 MB
EGAF50000370418 fastq.gz 946.3 MB
EGAF50000370419 fastq.gz 2.3 GB
EGAF50000370420 fastq.gz 324.9 MB
EGAF50000370421 fastq.gz 856.7 MB
EGAF50000370422 fastq.gz 2.3 GB
EGAF50000370423 fastq.gz 5.7 GB
EGAF50000370424 fastq.gz 1.2 GB
EGAF50000370425 fastq.gz 3.5 GB
EGAF50000370426 fastq.gz 793.1 MB
EGAF50000370427 fastq.gz 370.1 MB
EGAF50000370428 fastq.gz 2.3 GB
EGAF50000370429 fastq.gz 1.4 GB
EGAF50000370430 fastq.gz 605.5 MB
EGAF50000370431 fastq.gz 537.9 MB
EGAF50000370432 fastq.gz 1.7 GB
EGAF50000370433 fastq.gz 3.9 GB
EGAF50000370434 fastq.gz 198.2 MB
EGAF50000370435 fastq.gz 202.5 MB
EGAF50000370436 fastq.gz 539.5 MB
EGAF50000370437 fastq.gz 1.2 GB
EGAF50000370438 fastq.gz 406.5 MB
EGAF50000370439 fastq.gz 419.9 MB
EGAF50000370440 fastq.gz 1.2 GB
EGAF50000370441 fastq.gz 334.4 MB
EGAF50000370442 fastq.gz 388.2 MB
EGAF50000370443 fastq.gz 1.1 GB
EGAF50000370444 fastq.gz 3.1 GB
EGAF50000370445 fastq.gz 418.5 MB
EGAF50000370446 fastq.gz 1.3 GB
EGAF50000370447 fastq.gz 3.7 GB
EGAF50000370448 fastq.gz 449.7 MB
EGAF50000370449 fastq.gz 499.8 MB
EGAF50000370450 fastq.gz 1.4 GB
EGAF50000370451 fastq.gz 572.3 MB
EGAF50000370452 fastq.gz 592.5 MB
EGAF50000370453 fastq.gz 1.8 GB
EGAF50000370454 fastq.gz 5.1 GB
EGAF50000370455 fastq.gz 568.6 MB
EGAF50000370456 fastq.gz 642.4 MB
EGAF50000370457 fastq.gz 587.0 MB
EGAF50000370458 fastq.gz 1.8 GB
EGAF50000370459 fastq.gz 5.1 GB
EGAF50000370460 fastq.gz 345.3 MB
EGAF50000370461 fastq.gz 427.2 MB
EGAF50000370462 fastq.gz 1.1 GB
EGAF50000370463 fastq.gz 3.3 GB
EGAF50000370464 fastq.gz 479.2 MB
EGAF50000370465 fastq.gz 1.5 GB
EGAF50000370466 fastq.gz 278.3 MB
EGAF50000370467 fastq.gz 296.9 MB
EGAF50000370468 fastq.gz 497.8 MB
EGAF50000370469 fastq.gz 4.3 GB
EGAF50000370470 fastq.gz 644.1 MB
EGAF50000370471 fastq.gz 1.8 GB
EGAF50000370472 fastq.gz 4.7 GB
EGAF50000370473 fastq.gz 1.3 GB
EGAF50000370474 fastq.gz 3.7 GB
EGAF50000370475 fastq.gz 1.4 GB
EGAF50000370476 fastq.gz 3.7 GB
EGAF50000370477 fastq.gz 2.0 GB
EGAF50000370478 fastq.gz 95.4 MB
EGAF50000370479 fastq.gz 101.6 MB
EGAF50000370480 fastq.gz 257.8 MB
EGAF50000370481 fastq.gz 340.7 MB
EGAF50000370482 fastq.gz 361.2 MB
EGAF50000370483 fastq.gz 1.0 GB
EGAF50000370484 fastq.gz 137.5 MB
EGAF50000370485 fastq.gz 156.7 MB
EGAF50000370486 fastq.gz 253.1 MB
EGAF50000370487 fastq.gz 255.6 MB
EGAF50000370488 fastq.gz 282.3 MB
EGAF50000370489 fastq.gz 296.6 MB
EGAF50000370490 fastq.gz 781.9 MB
EGAF50000370491 fastq.gz 2.2 GB
EGAF50000370492 fastq.gz 425.2 MB
EGAF50000370493 fastq.gz 450.7 MB
EGAF50000370494 fastq.gz 1.3 GB
EGAF50000370495 fastq.gz 3.5 GB
EGAF50000370496 fastq.gz 991.6 MB
EGAF50000370497 fastq.gz 809.2 MB
EGAF50000370498 fastq.gz 852.8 MB
EGAF50000370499 fastq.gz 375.2 MB
EGAF50000370500 fastq.gz 1.1 GB
EGAF50000370501 fastq.gz 2.8 GB
EGAF50000370502 fastq.gz 1.2 GB
EGAF50000370503 fastq.gz 3.1 GB
EGAF50000370504 fastq.gz 307.5 MB
EGAF50000370505 fastq.gz 327.5 MB
EGAF50000370506 fastq.gz 891.9 MB
EGAF50000370507 fastq.gz 545.0 MB
EGAF50000370508 fastq.gz 582.1 MB
EGAF50000370509 fastq.gz 1.7 GB
EGAF50000370510 fastq.gz 4.3 GB
EGAF50000370511 fastq.gz 658.9 MB
EGAF50000370512 fastq.gz 676.3 MB
EGAF50000370513 fastq.gz 2.0 GB
EGAF50000370514 fastq.gz 5.1 GB
EGAF50000370515 fastq.gz 130.4 MB
EGAF50000370516 fastq.gz 144.3 MB
EGAF50000370517 fastq.gz 369.2 MB
EGAF50000370518 fastq.gz 946.8 MB
EGAF50000370519 fastq.gz 286.0 MB
EGAF50000370520 fastq.gz 331.8 MB
EGAF50000370521 fastq.gz 868.3 MB
EGAF50000370522 fastq.gz 2.3 GB
EGAF50000370523 fastq.gz 369.8 MB
EGAF50000370524 fastq.gz 339.5 MB
EGAF50000370525 fastq.gz 795.1 MB
EGAF50000370526 fastq.gz 2.3 GB
EGAF50000370527 fastq.gz 282.0 MB
EGAF50000370528 fastq.gz 326.0 MB
EGAF50000370529 fastq.gz 860.8 MB
EGAF50000370530 fastq.gz 743.2 MB
EGAF50000370531 fastq.gz 2.3 GB
EGAF50000370532 fastq.gz 5.7 GB
EGAF50000370533 fastq.gz 1.2 GB
EGAF50000370534 fastq.gz 8.5 GB
EGAF50000370535 fastq.gz 792.5 MB
EGAF50000370536 fastq.gz 2.4 GB
EGAF50000370537 fastq.gz 6.1 GB
EGAF50000370538 fastq.gz 363.7 MB
EGAF50000370539 fastq.gz 370.3 MB
EGAF50000370540 fastq.gz 1.0 GB
EGAF50000370541 fastq.gz 2.3 GB
EGAF50000370542 fastq.gz 435.0 MB
EGAF50000370543 fastq.gz 454.4 MB
EGAF50000370544 fastq.gz 1.3 GB
EGAF50000370545 fastq.gz 3.8 GB
EGAF50000370546 fastq.gz 606.3 MB
EGAF50000370547 fastq.gz 538.7 MB
EGAF50000370548 fastq.gz 1.7 GB
EGAF50000370549 fastq.gz 3.9 GB
EGAF50000370550 fastq.gz 198.3 MB
EGAF50000370551 fastq.gz 202.9 MB
EGAF50000370552 fastq.gz 540.8 MB
EGAF50000370553 fastq.gz 407.2 MB
EGAF50000370554 fastq.gz 421.0 MB
EGAF50000370555 fastq.gz 1.2 GB
EGAF50000370556 fastq.gz 2.6 GB
EGAF50000370557 fastq.gz 2.3 GB
EGAF50000370558 fastq.gz 6.1 GB
EGAF50000370559 fastq.gz 100.8 MB
EGAF50000370560 fastq.gz 128.9 MB
EGAF50000370561 fastq.gz 140.1 MB
EGAF50000370562 fastq.gz 363.9 MB
EGAF50000370563 fastq.gz 1.5 GB
EGAF50000370564 fastq.gz 779.6 MB
EGAF50000370565 fastq.gz 390.8 MB
EGAF50000370566 fastq.gz 1.1 GB
EGAF50000370567 fastq.gz 700.4 MB
EGAF50000370568 fastq.gz 1.2 GB
EGAF50000370569 fastq.gz 3.5 GB
EGAF50000370570 fastq.gz 1.1 GB
EGAF50000370571 fastq.gz 842.4 MB
EGAF50000370572 fastq.gz 5.6 GB
EGAF50000370573 fastq.gz 792.8 MB
EGAF50000370574 fastq.gz 838.2 MB
EGAF50000370575 fastq.gz 969.1 MB
EGAF50000370576 fastq.gz 2.3 GB
EGAF50000370577 fastq.gz 305.7 MB
EGAF50000370578 fastq.gz 2.4 GB
EGAF50000370579 fastq.gz 254.7 MB
EGAF50000370580 fastq.gz 507.8 MB
EGAF50000370581 fastq.gz 1.4 GB
EGAF50000370582 fastq.gz 510.2 MB
EGAF50000370583 fastq.gz 1.4 GB
EGAF50000370584 fastq.gz 2.3 GB
EGAF50000370585 fastq.gz 368.0 MB
EGAF50000370586 fastq.gz 4.0 GB
EGAF50000370587 fastq.gz 861.9 MB
EGAF50000370588 fastq.gz 2.3 GB
EGAF50000370589 fastq.gz 365.5 MB
EGAF50000370590 fastq.gz 6.4 GB
EGAF50000370591 fastq.gz 775.7 MB
EGAF50000370592 fastq.gz 2.2 GB
EGAF50000370593 fastq.gz 422.3 MB
EGAF50000370594 fastq.gz 1.3 GB
EGAF50000370595 fastq.gz 2.0 GB
EGAF50000370596 fastq.gz 2.6 GB
EGAF50000370597 fastq.gz 4.7 GB
EGAF50000370598 fastq.gz 795.2 MB
EGAF50000370599 fastq.gz 2.4 GB
EGAF50000370600 fastq.gz 6.1 GB
EGAF50000370601 fastq.gz 3.9 GB
EGAF50000370602 fastq.gz 793.2 MB
EGAF50000370603 fastq.gz 462.0 MB
EGAF50000370604 fastq.gz 129.7 MB
EGAF50000370605 fastq.gz 1.1 GB
EGAF50000370606 fastq.gz 523.6 MB
EGAF50000370607 fastq.gz 2.3 GB
EGAF50000370608 fastq.gz 3.1 GB
EGAF50000370609 fastq.gz 375.1 MB
EGAF50000370610 fastq.gz 449.3 MB
EGAF50000370611 fastq.gz 1.2 GB
344 Files (484.4 GB)