About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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SCIMAP PILOT D21

This dataset includes the RNA-seq and ATAC-seq fastq files, as well as the Cellranger ARC count table, for the first experiment with multimodal sequencing in the SCI-MAP project (1 sample). Here, human induced pluripotent stem cells underwent differentiation to chondrocytes for 21 days following an established protocol. Nuclei were isolated and sequenced in two modalities simultaneously; RNA and ATAC.

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Policy: LUMC Department Biomedical Data Sciences, Osteoarthritis group

Access to this dataset is controlled by [DAC name]. Access to data will be granted to qualified investigators for appropriate use. Please contact this DAC to request data access.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000001041 Gene Regulation Study

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000380920 fastq.gz 702.3 MB
EGAF50000380921 fastq.gz 3.7 GB
EGAF50000380922 fastq.gz 2.0 GB
EGAF50000380923 fastq.gz 3.6 GB
EGAF50000380924 fastq.gz 932.6 MB
EGAF50000380925 fastq.gz 801.9 MB
EGAF50000380926 fastq.gz 2.6 GB
EGAF50000380927 fastq.gz 9.5 GB
EGAF50000380928 h5 57.9 MB
9 Files (23.9 GB)