RNAseq data from 112 samples of benign or malignant ovarian tumours
This dataset contains ~1.2 TB RNA sequencing data in fastq format from 112 samples of fresh-frozen ovarian tumours from a total of 111 women, two samples being replicates. The samples were collected from the U-CAN collection at Uppsala Biobank and include both benign (n = 18) and malignant (n = 94) tumours. The RNA sequencing samples were sequenced using paired-end sequencing (2x150 bp) on an Illumina NovaSeq 6000 instrument at the SciLifeLab National Genomics Infrastructure (NGI) in Uppsala.
- 24/06/2025
- 112 samples
- DAC: EGAC50000000433
- Technology: Illumina NovaSeq 6000
- Archive: Federated EGA Sweden Federated EGA Node
Uppsala University Data Access Policy
By depositing data in the FEGA repository, researchers at Uppsala University aims to contribute to science and advance discoveries in biomedicine, healthcare and other fields. Requests for access to data will be assessed based on Swedish laws and regulations, and are only accepted if data will be used for research. For requests from researchers outside the European Union, data will normally only be released to countries that the European Union considers to have an adequate level of data protection, see list of countries here: https://commission.europa.eu/law/law-topic/data-protection/international-dimension-data-protection/adequacy-decisions_en Requests must include information about the following aspects: - As genetic data is regarded as sensitive personal information, a request must describe how the data will be correctly handled in accordance to the laws and ethical guidelines in the receiving country. That should include an approval from an ethics committee or reference to national/equivalent guidelines. - Researchers in the European Union must specify the legal basis according to the General Data Protection Regulation (GDPR) to use the data. - Information on how data will be stored and handled in relation to the information security procedures at the receiving organization. Before data can be released the requester must be prepared to sign a “Warrant to respect” and a “Data Transfer Agreement” specifying the conditions that needs to be fulfilled for data to be released. Requesters need to be aware of that assessment of requests and preparation of agreements may be subject to lead times.
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS50000001045 | RNASeq |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Quality Report | |
|---|---|---|---|---|
| EGAF50000375708 | fastq.gz | 3.8 GB | ||
| EGAF50000375709 | fastq.gz | 3.9 GB | ||
| EGAF50000375710 | fastq.gz | 3.4 GB | ||
| EGAF50000375711 | fastq.gz | 3.7 GB | ||
| EGAF50000375712 | fastq.gz | 6.9 GB | ||
| EGAF50000375713 | fastq.gz | 7.3 GB | ||
| EGAF50000375714 | fastq.gz | 5.6 GB | ||
| EGAF50000375715 | fastq.gz | 5.9 GB | ||
| EGAF50000375716 | fastq.gz | 5.6 GB | ||
| EGAF50000375717 | fastq.gz | 6.1 GB | ||
| EGAF50000375718 | fastq.gz | 4.6 GB | ||
| EGAF50000375719 | fastq.gz | 4.9 GB | ||
| EGAF50000375720 | fastq.gz | 5.6 GB | ||
| EGAF50000375721 | fastq.gz | 5.9 GB | ||
| EGAF50000375722 | fastq.gz | 3.6 GB | ||
| EGAF50000375723 | fastq.gz | 3.9 GB | ||
| EGAF50000375724 | fastq.gz | 6.3 GB | ||
| EGAF50000375725 | fastq.gz | 6.6 GB | ||
| EGAF50000375726 | fastq.gz | 7.0 GB | ||
| EGAF50000375727 | fastq.gz | 7.5 GB | ||
| EGAF50000375728 | fastq.gz | 5.8 GB | ||
| EGAF50000375729 | fastq.gz | 6.2 GB | ||
| EGAF50000375730 | fastq.gz | 4.5 GB | ||
| EGAF50000375731 | fastq.gz | 4.7 GB | ||
| EGAF50000375732 | fastq.gz | 6.8 GB | ||
| EGAF50000375733 | fastq.gz | 7.1 GB | ||
| EGAF50000375734 | fastq.gz | 3.8 GB | ||
| EGAF50000375735 | fastq.gz | 4.1 GB | ||
| EGAF50000375736 | fastq.gz | 5.6 GB | ||
| EGAF50000375737 | fastq.gz | 5.9 GB | ||
| EGAF50000375738 | fastq.gz | 8.3 GB | ||
| EGAF50000375739 | fastq.gz | 8.7 GB | ||
| EGAF50000375740 | fastq.gz | 5.2 GB | ||
| EGAF50000375741 | fastq.gz | 5.5 GB | ||
| EGAF50000375742 | fastq.gz | 6.3 GB | ||
| EGAF50000375743 | fastq.gz | 6.7 GB | ||
| EGAF50000375744 | fastq.gz | 3.1 GB | ||
| EGAF50000375745 | fastq.gz | 3.3 GB | ||
| EGAF50000375746 | fastq.gz | 4.7 GB | ||
| EGAF50000375747 | fastq.gz | 5.0 GB | ||
| EGAF50000375748 | fastq.gz | 7.2 GB | ||
| EGAF50000375749 | fastq.gz | 7.6 GB | ||
| EGAF50000375750 | fastq.gz | 6.6 GB | ||
| EGAF50000375751 | fastq.gz | 7.0 GB | ||
| EGAF50000375752 | fastq.gz | 4.1 GB | ||
| EGAF50000375753 | fastq.gz | 4.4 GB | ||
| EGAF50000375754 | fastq.gz | 2.9 GB | ||
| EGAF50000375755 | fastq.gz | 3.0 GB | ||
| EGAF50000375756 | fastq.gz | 5.4 GB | ||
| EGAF50000375757 | fastq.gz | 5.7 GB | ||
| EGAF50000375758 | fastq.gz | 6.8 GB | ||
| EGAF50000375759 | fastq.gz | 6.9 GB | ||
| EGAF50000375760 | fastq.gz | 5.8 GB | ||
| EGAF50000375761 | fastq.gz | 6.1 GB | ||
| EGAF50000375762 | fastq.gz | 7.2 GB | ||
| EGAF50000375763 | fastq.gz | 7.5 GB | ||
| EGAF50000375764 | fastq.gz | 3.8 GB | ||
| EGAF50000375765 | fastq.gz | 4.1 GB | ||
| EGAF50000375766 | fastq.gz | 5.5 GB | ||
| EGAF50000375767 | fastq.gz | 5.9 GB | ||
| EGAF50000375768 | fastq.gz | 5.0 GB | ||
| EGAF50000375769 | fastq.gz | 5.3 GB | ||
| EGAF50000375770 | fastq.gz | 5.3 GB | ||
| EGAF50000375771 | fastq.gz | 5.5 GB | ||
| EGAF50000375772 | fastq.gz | 6.3 GB | ||
| EGAF50000375773 | fastq.gz | 6.8 GB | ||
| EGAF50000375774 | fastq.gz | 5.0 GB | ||
| EGAF50000375775 | fastq.gz | 5.3 GB | ||
| EGAF50000375776 | fastq.gz | 8.4 GB | ||
| EGAF50000375777 | fastq.gz | 8.9 GB | ||
| EGAF50000375778 | fastq.gz | 7.7 GB | ||
| EGAF50000375779 | fastq.gz | 8.0 GB | ||
| EGAF50000375780 | fastq.gz | 6.5 GB | ||
| EGAF50000375781 | fastq.gz | 6.9 GB | ||
| EGAF50000375782 | fastq.gz | 4.2 GB | ||
| EGAF50000375783 | fastq.gz | 4.5 GB | ||
| EGAF50000375784 | fastq.gz | 4.4 GB | ||
| EGAF50000375785 | fastq.gz | 4.7 GB | ||
| EGAF50000375786 | fastq.gz | 3.9 GB | ||
| EGAF50000375787 | fastq.gz | 4.2 GB | ||
| EGAF50000375788 | fastq.gz | 5.4 GB | ||
| EGAF50000375789 | fastq.gz | 5.8 GB | ||
| EGAF50000375790 | fastq.gz | 4.7 GB | ||
| EGAF50000375791 | fastq.gz | 5.0 GB | ||
| EGAF50000375792 | fastq.gz | 4.5 GB | ||
| EGAF50000375793 | fastq.gz | 4.7 GB | ||
| EGAF50000375794 | fastq.gz | 3.0 GB | ||
| EGAF50000375795 | fastq.gz | 3.3 GB | ||
| EGAF50000375796 | fastq.gz | 7.3 GB | ||
| EGAF50000375797 | fastq.gz | 7.7 GB | ||
| EGAF50000375798 | fastq.gz | 6.2 GB | ||
| EGAF50000375799 | fastq.gz | 6.6 GB | ||
| EGAF50000375800 | fastq.gz | 2.6 GB | ||
| EGAF50000375801 | fastq.gz | 2.8 GB | ||
| EGAF50000375802 | fastq.gz | 5.5 GB | ||
| EGAF50000375803 | fastq.gz | 5.8 GB | ||
| EGAF50000375804 | fastq.gz | 3.9 GB | ||
| EGAF50000375805 | fastq.gz | 4.1 GB | ||
| EGAF50000375806 | fastq.gz | 6.7 GB | ||
| EGAF50000375807 | fastq.gz | 7.1 GB | ||
| EGAF50000375808 | fastq.gz | 5.0 GB | ||
| EGAF50000375809 | fastq.gz | 5.3 GB | ||
| EGAF50000375810 | fastq.gz | 4.4 GB | ||
| EGAF50000375811 | fastq.gz | 4.7 GB | ||
| EGAF50000375812 | fastq.gz | 8.3 GB | ||
| EGAF50000375813 | fastq.gz | 8.8 GB | ||
| EGAF50000375814 | fastq.gz | 7.2 GB | ||
| EGAF50000375815 | fastq.gz | 7.5 GB | ||
| EGAF50000375816 | fastq.gz | 5.1 GB | ||
| EGAF50000375817 | fastq.gz | 5.4 GB | ||
| EGAF50000375818 | fastq.gz | 6.2 GB | ||
| EGAF50000375819 | fastq.gz | 6.5 GB | ||
| EGAF50000375820 | fastq.gz | 6.4 GB | ||
| EGAF50000375821 | fastq.gz | 6.8 GB | ||
| EGAF50000375822 | fastq.gz | 4.5 GB | ||
| EGAF50000375823 | fastq.gz | 4.8 GB | ||
| EGAF50000375824 | fastq.gz | 5.7 GB | ||
| EGAF50000375825 | fastq.gz | 6.0 GB | ||
| EGAF50000378134 | fastq.gz | 8.0 GB | ||
| EGAF50000378135 | fastq.gz | 8.5 GB | ||
| EGAF50000378136 | fastq.gz | 4.4 GB | ||
| EGAF50000378137 | fastq.gz | 4.7 GB | ||
| EGAF50000378138 | fastq.gz | 4.8 GB | ||
| EGAF50000378139 | fastq.gz | 5.1 GB | ||
| EGAF50000378140 | fastq.gz | 8.0 GB | ||
| EGAF50000378141 | fastq.gz | 8.5 GB | ||
| EGAF50000378142 | fastq.gz | 6.0 GB | ||
| EGAF50000378143 | fastq.gz | 6.4 GB | ||
| EGAF50000378144 | fastq.gz | 7.1 GB | ||
| EGAF50000378145 | fastq.gz | 7.5 GB | ||
| EGAF50000378146 | fastq.gz | 4.9 GB | ||
| EGAF50000378147 | fastq.gz | 5.1 GB | ||
| EGAF50000378148 | fastq.gz | 6.5 GB | ||
| EGAF50000378149 | fastq.gz | 6.9 GB | ||
| EGAF50000378150 | fastq.gz | 5.9 GB | ||
| EGAF50000378151 | fastq.gz | 6.3 GB | ||
| EGAF50000378152 | fastq.gz | 4.3 GB | ||
| EGAF50000378153 | fastq.gz | 4.5 GB | ||
| EGAF50000378154 | fastq.gz | 5.8 GB | ||
| EGAF50000378155 | fastq.gz | 6.1 GB | ||
| EGAF50000378156 | fastq.gz | 4.0 GB | ||
| EGAF50000378157 | fastq.gz | 4.3 GB | ||
| EGAF50000378158 | fastq.gz | 5.4 GB | ||
| EGAF50000378159 | fastq.gz | 5.9 GB | ||
| EGAF50000378160 | fastq.gz | 4.3 GB | ||
| EGAF50000378161 | fastq.gz | 4.5 GB | ||
| EGAF50000378162 | fastq.gz | 4.9 GB | ||
| EGAF50000378163 | fastq.gz | 5.2 GB | ||
| EGAF50000378164 | fastq.gz | 5.1 GB | ||
| EGAF50000378165 | fastq.gz | 5.4 GB | ||
| EGAF50000378166 | fastq.gz | 5.9 GB | ||
| EGAF50000378167 | fastq.gz | 6.2 GB | ||
| EGAF50000378168 | fastq.gz | 4.1 GB | ||
| EGAF50000378169 | fastq.gz | 4.3 GB | ||
| EGAF50000378170 | fastq.gz | 6.5 GB | ||
| EGAF50000378171 | fastq.gz | 6.9 GB | ||
| EGAF50000378172 | fastq.gz | 7.8 GB | ||
| EGAF50000378173 | fastq.gz | 8.3 GB | ||
| EGAF50000378174 | fastq.gz | 4.3 GB | ||
| EGAF50000378175 | fastq.gz | 4.6 GB | ||
| EGAF50000378176 | fastq.gz | 5.8 GB | ||
| EGAF50000378177 | fastq.gz | 6.3 GB | ||
| EGAF50000378178 | fastq.gz | 6.8 GB | ||
| EGAF50000378179 | fastq.gz | 7.2 GB | ||
| EGAF50000378180 | fastq.gz | 3.9 GB | ||
| EGAF50000378181 | fastq.gz | 4.1 GB | ||
| EGAF50000378182 | fastq.gz | 4.3 GB | ||
| EGAF50000378183 | fastq.gz | 4.5 GB | ||
| EGAF50000378184 | fastq.gz | 3.9 GB | ||
| EGAF50000378185 | fastq.gz | 4.2 GB | ||
| EGAF50000378186 | fastq.gz | 4.5 GB | ||
| EGAF50000378187 | fastq.gz | 4.8 GB | ||
| EGAF50000378188 | fastq.gz | 4.8 GB | ||
| EGAF50000378189 | fastq.gz | 5.1 GB | ||
| EGAF50000378190 | fastq.gz | 5.3 GB | ||
| EGAF50000378191 | fastq.gz | 5.6 GB | ||
| EGAF50000378192 | fastq.gz | 4.4 GB | ||
| EGAF50000378193 | fastq.gz | 4.7 GB | ||
| EGAF50000378194 | fastq.gz | 6.2 GB | ||
| EGAF50000378195 | fastq.gz | 6.5 GB | ||
| EGAF50000378196 | fastq.gz | 6.2 GB | ||
| EGAF50000378197 | fastq.gz | 6.7 GB | ||
| EGAF50000378198 | fastq.gz | 6.2 GB | ||
| EGAF50000378199 | fastq.gz | 6.7 GB | ||
| EGAF50000378200 | fastq.gz | 4.7 GB | ||
| EGAF50000378201 | fastq.gz | 5.0 GB | ||
| EGAF50000378202 | fastq.gz | 4.9 GB | ||
| EGAF50000378203 | fastq.gz | 5.2 GB | ||
| EGAF50000378204 | fastq.gz | 4.4 GB | ||
| EGAF50000378205 | fastq.gz | 4.6 GB | ||
| EGAF50000378206 | fastq.gz | 4.8 GB | ||
| EGAF50000378207 | fastq.gz | 5.0 GB | ||
| EGAF50000378208 | fastq.gz | 5.6 GB | ||
| EGAF50000378209 | fastq.gz | 6.0 GB | ||
| EGAF50000378210 | fastq.gz | 6.1 GB | ||
| EGAF50000378211 | fastq.gz | 6.5 GB | ||
| EGAF50000378212 | fastq.gz | 3.9 GB | ||
| EGAF50000378213 | fastq.gz | 4.1 GB | ||
| EGAF50000378214 | fastq.gz | 5.9 GB | ||
| EGAF50000378215 | fastq.gz | 6.2 GB | ||
| EGAF50000378216 | fastq.gz | 4.3 GB | ||
| EGAF50000378217 | fastq.gz | 4.6 GB | ||
| EGAF50000378218 | fastq.gz | 5.0 GB | ||
| EGAF50000378219 | fastq.gz | 5.3 GB | ||
| EGAF50000378220 | fastq.gz | 7.5 GB | ||
| EGAF50000378221 | fastq.gz | 7.8 GB | ||
| EGAF50000378222 | fastq.gz | 6.6 GB | ||
| EGAF50000378223 | fastq.gz | 6.9 GB | ||
| EGAF50000378224 | fastq.gz | 10.7 GB | ||
| EGAF50000378225 | fastq.gz | 11.2 GB | ||
| EGAF50000378226 | fastq.gz | 6.0 GB | ||
| EGAF50000378227 | fastq.gz | 6.3 GB | ||
| EGAF50000378228 | fastq.gz | 7.5 GB | ||
| EGAF50000378229 | fastq.gz | 8.0 GB | ||
| EGAF50000378230 | fastq.gz | 382.6 MB | ||
| EGAF50000378231 | fastq.gz | 404.2 MB | ||
| EGAF50000378232 | fastq.gz | 6.6 GB | ||
| EGAF50000378233 | fastq.gz | 7.0 GB | ||
| EGAF50000378234 | fastq.gz | 5.3 GB | ||
| EGAF50000378235 | fastq.gz | 5.5 GB | ||
| EGAF50000378236 | fastq.gz | 7.9 GB | ||
| EGAF50000378237 | fastq.gz | 8.4 GB | ||
| EGAF50000378238 | fastq.gz | 6.1 GB | ||
| EGAF50000378239 | fastq.gz | 6.5 GB | ||
| 224 Files (1.3 TB) | ||||