About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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Integrated single cell analysis identifies CD39+ tumor-associated NK cells with cytotoxic potential in NSCLC

In order to explore the intratumoral NK cell heterogeneity at a transcriptomic and epigenetic level, we performed matched single nucleus RNA and ATAC sequencing of isolated CD45+CD3+CD56+ immune cells from 11 NSCLC patients.

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Data Access Policy of Datasets controlled by MF-DAC

ATTENTION: Please check the following policy and the documents/information to provide in order to get access to the requested datasets. You can find the governing policy on Zenodo under the link: https://zenodo.org/records/12517622 Please provide all information as requested in the document to the MF-DAC. Additionally, you can find more information about the Data Access Committee of the Medical Faculty of the University of Basel (MF-DAC) under the following link on Zenodo: https://zenodo.org/records/10137776

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000001189 Transcriptome Sequencing
EGAS50000001190 Epigenetics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000416954 fastq.gz 12.6 GB
EGAF50000416955 fastq.gz 12.3 GB
EGAF50000416956 fastq.gz 13.4 GB
EGAF50000416957 fastq.gz 16.7 GB
EGAF50000416958 fastq.gz 13.1 GB
EGAF50000416959 fastq.gz 11.8 GB
EGAF50000416960 fastq.gz 15.5 GB
EGAF50000416961 fastq.gz 16.1 GB
EGAF50000416962 fastq.gz 10.9 GB
EGAF50000416963 fastq.gz 7.5 GB
EGAF50000416964 fastq.gz 11.2 GB
EGAF50000416965 fastq.gz 7.3 GB
EGAF50000416966 fastq.gz 5.4 GB
EGAF50000416967 fastq.gz 7.3 GB
EGAF50000416968 fastq.gz 22.4 GB
EGAF50000416969 fastq.gz 17.8 GB
EGAF50000416970 fastq.gz 6.9 GB
EGAF50000416971 fastq.gz 14.7 GB
EGAF50000416972 fastq.gz 17.4 GB
EGAF50000416973 fastq.gz 15.4 GB
EGAF50000416974 fastq.gz 9.5 GB
EGAF50000416975 fastq.gz 17.7 GB
EGAF50000416976 fastq.gz 10.4 GB
EGAF50000416977 fastq.gz 7.9 GB
EGAF50000416978 fastq.gz 19.7 GB
EGAF50000416979 fastq.gz 4.1 GB
EGAF50000416980 fastq.gz 11.0 GB
EGAF50000416981 fastq.gz 19.7 GB
EGAF50000416982 fastq.gz 13.7 GB
EGAF50000416983 fastq.gz 19.4 GB
EGAF50000416984 fastq.gz 6.3 GB
EGAF50000416985 fastq.gz 7.4 GB
EGAF50000416986 fastq.gz 5.7 GB
EGAF50000416987 fastq.gz 16.8 GB
EGAF50000416988 fastq.gz 22.4 GB
EGAF50000416989 fastq.gz 13.3 GB
EGAF50000416990 fastq.gz 10.2 GB
EGAF50000416991 fastq.gz 13.6 GB
EGAF50000416992 fastq.gz 14.3 GB
EGAF50000416993 fastq.gz 41.0 GB
EGAF50000416994 fastq.gz 10.4 GB
EGAF50000416995 fastq.gz 5.1 GB
EGAF50000416996 fastq.gz 15.0 GB
EGAF50000416997 fastq.gz 17.7 GB
EGAF50000416998 fastq.gz 6.1 GB
EGAF50000416999 fastq.gz 8.6 GB
EGAF50000417000 fastq.gz 15.8 GB
EGAF50000417001 fastq.gz 13.3 GB
EGAF50000417002 fastq.gz 8.4 GB
EGAF50000417003 fastq.gz 4.1 GB
EGAF50000417004 fastq.gz 6.4 GB
EGAF50000417005 fastq.gz 6.2 GB
EGAF50000417006 fastq.gz 16.1 GB
EGAF50000417007 fastq.gz 13.8 GB
EGAF50000417008 fastq.gz 11.4 GB
55 Files (698.3 GB)