About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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Patient-derived organoids cohort raw FASTQ from SGMedical

Raw FASTQ files for a glioblastoma multiforme organoid study, including exome sequencing and RNA-seq. 29 runs (paired-end), 58 FASTQ.c4gh files (R1/R2). Short-read Illumina; library strategies include exome capture and stranded total RNA-seq (see Experiment records for kit/instrument details). No processed results are included; access is controlled under the selected Policy.

Request Access

SG Medical Data Access Policy

1. Purpose & Scope This policy sets out the conditions under which SG Medical (“the Company”) grants access to managed-access genomic and clinical datasets deposited in the EGA or held on internal servers. Data may be used only for the approved research project and for biomedical research purposes. 2. Definitions Data = the managed-access datasets; Authorised Personnel = named researchers at the user institution who have been approved; Project = the study described in the access request; External Collaborator = researcher outside the user institution. 3. Access Approval Access is granted per project to Authorised Personnel after (i) submission of a project proposal, (ii) review by SG Medical’s Data Access Committee (DAC), and (iii) account creation with role-based, least-privilege permissions. Any change in personnel or protocol must be reported within 30 days. 4. Permitted Use & Restrictions • Use data solely within the approved research aims. • No re-identification or linkage that could reveal participant identities. • No onward sharing except to new users who obtain separate approval. ​ 5. Security & Confidentiality Store data on protected institutional systems (VPN/firewall, Unix group-restricted permissions); laptops must be password-locked after 5 min; any portable media must be encrypted. Derived files inherit the same security level. 6. Publication & Acknowledgement Publications must acknowledge the Data Producers and cite the EGA accession. A publication moratorium applies until 12 months after initial data release unless the Data Producers give written consent for earlier publication. ​ 7. Intellectual Property Users must not claim IP over the raw data or block downstream access. IP on downstream discoveries is allowed only under non-blocking licensing that does not hinder further research. ​ 8. Retention & Destruction When the project ends or data are no longer required, users must securely destroy all copies and backups, unless legal or audit obligations require archival storage; such archives must be reviewed within five years. 9. Breach & Termination Any breach must be reported immediately; the Company may suspend access, require data destruction, and pursue disciplinary or legal remedies. SG Medical may terminate access at any time via written notice. ​ Effective Date: 1 June 2025 (subject to revision by the DAC as regulations evolve).

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000001221 Cancer Genomics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000424513 fastq.gz 5.4 GB
EGAF50000424514 fastq.gz 5.2 GB
EGAF50000424515 fastq.gz 6.4 GB
EGAF50000424516 fastq.gz 2.0 GB
EGAF50000424517 fastq.gz 6.1 GB
EGAF50000424518 fastq.gz 5.7 GB
EGAF50000424519 fastq.gz 6.3 GB
EGAF50000424520 fastq.gz 5.4 GB
EGAF50000424521 fastq.gz 2.1 GB
EGAF50000424522 fastq.gz 2.2 GB
EGAF50000424523 fastq.gz 5.0 GB
EGAF50000424524 fastq.gz 6.0 GB
EGAF50000424525 fastq.gz 6.5 GB
EGAF50000424526 fastq.gz 6.3 GB
EGAF50000424527 fastq.gz 5.6 GB
EGAF50000424528 fastq.gz 5.5 GB
EGAF50000424529 fastq.gz 5.7 GB
EGAF50000424530 fastq.gz 6.0 GB
EGAF50000424531 fastq.gz 2.1 GB
EGAF50000424532 fastq.gz 5.3 GB
EGAF50000424533 fastq.gz 5.7 GB
EGAF50000424534 fastq.gz 6.3 GB
EGAF50000424535 fastq.gz 1.7 GB
EGAF50000424536 fastq.gz 6.7 GB
EGAF50000424537 fastq.gz 1.8 GB
EGAF50000424538 fastq.gz 5.5 GB
EGAF50000424539 fastq.gz 6.5 GB
EGAF50000424540 fastq.gz 6.4 GB
EGAF50000424541 fastq.gz 6.7 GB
EGAF50000424542 fastq.gz 5.8 GB
EGAF50000424543 fastq.gz 6.4 GB
EGAF50000424544 fastq.gz 5.9 GB
EGAF50000424545 fastq.gz 6.6 GB
EGAF50000424546 fastq.gz 5.1 GB
EGAF50000424547 fastq.gz 4.9 GB
EGAF50000424548 fastq.gz 6.3 GB
EGAF50000424549 fastq.gz 6.1 GB
EGAF50000424550 fastq.gz 5.5 GB
EGAF50000424551 fastq.gz 6.3 GB
EGAF50000424552 fastq.gz 6.4 GB
EGAF50000424553 fastq.gz 5.1 GB
EGAF50000424554 fastq.gz 2.0 GB
EGAF50000424555 fastq.gz 7.0 GB
EGAF50000424556 fastq.gz 6.1 GB
EGAF50000424557 fastq.gz 2.1 GB
EGAF50000424558 fastq.gz 6.1 GB
EGAF50000424559 fastq.gz 5.9 GB
EGAF50000424560 fastq.gz 5.5 GB
EGAF50000424561 fastq.gz 6.6 GB
EGAF50000424562 fastq.gz 5.6 GB
EGAF50000424563 fastq.gz 5.6 GB
EGAF50000424564 fastq.gz 6.3 GB
EGAF50000424565 fastq.gz 6.3 GB
EGAF50000424566 fastq.gz 6.8 GB
EGAF50000424567 fastq.gz 5.6 GB
EGAF50000424568 fastq.gz 6.5 GB
EGAF50000424569 fastq.gz 4.8 GB
EGAF50000424570 fastq.gz 5.8 GB
58 Files (312.8 GB)