About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
Need Help?

RNAseq of human intestinal epithelial cell layers cultured in OGM, ENR, and ENRRT

This dataset contains RNA sequencing data in fastq and bam format from 24 samples of human jejunum organoids grown in 3D configuration or as 2D monolayers on anodisc imaging chambers (AICs) in medium formulations OGM, ENR, and ENRRT. The RNA sequencing samples were sequenced using paired-end sequencing (2x150 bp) on an Illumina NovaSeq 6000 instrument at the SciLifeLab National Genomics Infrastructure (NGI) in Uppsala.

Request Access

Uppsala University Data Access Policy

By depositing data in the FEGA repository, researchers at Uppsala University aim to contribute to science and advance discoveries in biomedicine, healthcare and other fields. Deposited data in the FEGA repository is regarded as sensitive personal information. The current interpretation of Swedish laws and regulations only allows Uppsala University to approve release of datasets to researchers in Sweden that have an ethics approval from Swedish Ethical Review Authority to perform research on the requested datasets in FEGA. For researchers not affiliated to a higher education institution in Sweden it is possible, provided access is permitted, to access and analyse data using the support at Uppsala University. Analysis may be done with the help of personnel from the National Bioinformatics Infrastructure Sweden and the computational resources available at the Uppsala University supercomputing centre. Data may, however, not be transferred outside of Uppsala University.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000001241 Transcriptome Sequencing

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000426755 fastq.gz 8.6 GB
EGAF50000426756 fastq.gz 9.0 GB
EGAF50000426757 fastq.gz 9.4 GB
EGAF50000426758 fastq.gz 9.9 GB
EGAF50000426759 fastq.gz 7.9 GB
EGAF50000426760 fastq.gz 8.3 GB
EGAF50000426761 fastq.gz 10.0 GB
EGAF50000426762 fastq.gz 10.8 GB
EGAF50000426763 fastq.gz 7.7 GB
EGAF50000426764 fastq.gz 8.2 GB
EGAF50000426765 fastq.gz 9.6 GB
EGAF50000426766 fastq.gz 10.1 GB
EGAF50000426767 fastq.gz 8.3 GB
EGAF50000426768 fastq.gz 8.9 GB
EGAF50000426769 fastq.gz 8.8 GB
EGAF50000426770 fastq.gz 8.3 GB
EGAF50000426771 fastq.gz 8.5 GB
EGAF50000426772 fastq.gz 8.0 GB
EGAF50000426773 fastq.gz 7.5 GB
EGAF50000426774 fastq.gz 7.9 GB
EGAF50000426775 fastq.gz 8.2 GB
EGAF50000426776 fastq.gz 8.5 GB
EGAF50000426777 fastq.gz 6.9 GB
EGAF50000426778 fastq.gz 7.3 GB
EGAF50000426779 fastq.gz 8.5 GB
EGAF50000426780 fastq.gz 8.3 GB
EGAF50000426781 fastq.gz 9.6 GB
EGAF50000426782 fastq.gz 10.1 GB
EGAF50000426783 fastq.gz 7.1 GB
EGAF50000426784 fastq.gz 7.5 GB
EGAF50000426785 fastq.gz 8.6 GB
EGAF50000426786 fastq.gz 9.2 GB
EGAF50000426787 fastq.gz 8.7 GB
EGAF50000426788 fastq.gz 9.4 GB
EGAF50000426789 fastq.gz 6.5 GB
EGAF50000426790 fastq.gz 6.8 GB
EGAF50000426791 fastq.gz 12.2 GB
EGAF50000426792 fastq.gz 13.0 GB
EGAF50000426793 fastq.gz 9.8 GB
EGAF50000426794 fastq.gz 10.4 GB
EGAF50000426795 fastq.gz 8.7 GB
EGAF50000426796 fastq.gz 9.2 GB
EGAF50000426797 fastq.gz 6.9 GB
EGAF50000426798 fastq.gz 6.6 GB
EGAF50000426799 fastq.gz 6.9 GB
EGAF50000426800 fastq.gz 7.7 GB
EGAF50000426801 fastq.gz 7.0 GB
EGAF50000426802 fastq.gz 7.4 GB
EGAF50000426803 bam 35.3 GB
EGAF50000426804 bam 23.8 GB
EGAF50000426805 txt 36.2 MB
EGAF50000426806 bam 14.7 GB
EGAF50000426807 txt 36.2 MB
EGAF50000426808 bam 11.1 GB
EGAF50000426809 txt 36.2 MB
EGAF50000426810 bam 33.4 GB
EGAF50000426811 bam 34.8 GB
EGAF50000426812 bam 33.3 GB
EGAF50000426813 txt 36.2 MB
EGAF50000426814 bam 39.6 GB
EGAF50000426815 txt 36.2 MB
EGAF50000426816 bam 29.8 GB
EGAF50000426817 txt 36.2 MB
EGAF50000426818 bam 32.4 GB
EGAF50000426819 txt 36.2 MB
EGAF50000426820 bam 14.1 GB
EGAF50000426821 txt 36.2 MB
EGAF50000426822 txt 36.2 MB
EGAF50000426823 bam 42.5 GB
EGAF50000426824 txt 36.2 MB
EGAF50000426825 bam 26.3 GB
EGAF50000426826 txt 36.2 MB
EGAF50000426827 txt 36.2 MB
EGAF50000426828 txt 36.2 MB
EGAF50000426829 bam 13.6 GB
EGAF50000426830 bam 33.2 GB
EGAF50000426831 txt 36.2 MB
EGAF50000426832 bam 33.3 GB
EGAF50000426833 txt 36.2 MB
EGAF50000426834 txt 36.2 MB
EGAF50000426835 txt 36.2 MB
EGAF50000426836 bam 34.9 GB
EGAF50000426837 bam 38.1 GB
EGAF50000426838 txt 36.2 MB
EGAF50000426839 bam 30.6 GB
EGAF50000426840 bam 30.3 GB
EGAF50000426841 txt 36.2 MB
EGAF50000426842 bam 15.0 GB
EGAF50000426843 txt 36.2 MB
EGAF50000426844 txt 36.2 MB
EGAF50000426845 bam 14.4 GB
EGAF50000426846 txt 36.2 MB
EGAF50000426847 txt 36.2 MB
EGAF50000426848 bam 30.8 GB
EGAF50000426849 txt 36.2 MB
EGAF50000426850 bam 34.4 GB
96 Files (1.1 TB)