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Single-cell Profiling of LONG-read Genome, Epigenome, and Transcriptome (SPLONGGET)

This set contains targeted and untargeted SPLONGGET single-cell multiome data of four longitudinal samples from a case of pediatric high hyperdiploid B-cell Acute Lymphoblastic Leukemia (B-ALL; case XG111), taken at diagnosis and three relapse time points. SPLONGGET libraries contain standard 10X Genomics Multiome barcodes and transcriptome and genome/ATAC are read out separately via Oxford Nanopore Technologies Nanopore sequencing on R10.4.1 PromethION flow cells. Basecalled fastq files (Dorado super high accuracy model), unaligned ubam files (targeted SPLONGGET), and minimap2 GRCh38-aligned, barcode tagged and deduplicated bam files (untargeted SPLONGGET) are provided.

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This policy applies to the access to and transfer of VIB research datasets that contain non-anonymous Personal Data which are subject to the provisions of the General Data Protection Regulation (EU) 2016/679.

Applicability This policy applies to the access to and transfer of VIB research datasets that contain non-anonymous Personal Data which are subject to the provisions of the General Data Protection Regulation (EU) 2016/679. Access/transfer conditions - The access/transfer is subject to approval by the VIB Data Access Committee. - The proposed research purpose should not be incompatible with the primary research purpose for which the data were originally generated. - The Recipient shall have the necessary competence to handle such datasets. - The Recipient shall have in place adequate safeguards for the protection of Personal Data. - Access is subject to a Data Transfer/Access Agreement which will be managed by VIB Innovation & Business. - The Data Transfer/Access will be limited to the Data that are necessary for the proposed research. Access/transfer procedure - Requests to access or obtain non-anonymous datasets should be submitted to dac@vib.be with a copy to the responsible scientist that has uploaded the dataset onto the repository. - The Requestor must fill in an online request form that will gather amongst other the following information: o Name, affiliation (legal entity) and contact information of the requesting recipient party. o Reference to the specific dataset(s) for which access or transfer is requested. o Description of the research purpose for which the data will be used. - The VIB Data Access Committee will take a decision to approve access/transfer within 14 days upon receipt of the request, involving the responsible scientist. - Data access will be given / Data will be transferred subject to and after completion of a Data Transfer/Access Agreement.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000001278 Cancer Genomics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
EGAF50000434287 fastq.gz 184.7 GB
EGAF50000434288 fastq.gz 184.8 GB
EGAF50000434289 fastq.gz 217.9 GB
EGAF50000434290 fastq.gz 131.4 GB
EGAF50000434291 ubam 455.1 MB
EGAF50000434292 fastq.gz 208.5 GB
EGAF50000434293 fastq.gz 158.8 GB
EGAF50000434294 fastq.gz 85.4 GB
EGAF50000434295 fastq.gz 145.0 GB
EGAF50000434296 ubam 56.8 GB
EGAF50000434297 ubam 3.4 GB
EGAF50000434298 bam 129.6 GB
EGAF50000434299 bam 135.7 GB
EGAF50000434300 bam 114.4 GB
EGAF50000434301 bam 112.1 GB
EGAF50000434302 bam 55.4 GB
EGAF50000434303 bam 3.4 GB
EGAF50000434304 bam 45.5 GB
EGAF50000434305 bam 42.8 GB
EGAF50000434306 bam 24.6 GB
EGAF50000434307 bam 173.1 MB
EGAF50000434308 bam 3.1 GB
EGAF50000434309 bam 745.1 MB
EGAF50000434310 bam 471.5 MB
EGAF50000434311 bam 173.2 MB
EGAF50000434312 bam 1.1 GB
EGAF50000434313 bam 707.2 MB
EGAF50000834945 fastq.gz 3.5 GB
EGAF50000834946 fastq.gz 646.8 MB
EGAF50000834947 fastq.gz 3.6 GB
EGAF50000834948 fastq.gz 1.7 GB
EGAF50000834949 fastq.gz 486.3 MB
EGAF50000834950 fastq.gz 426.4 MB
EGAF50000834951 fastq.gz 1.8 GB
EGAF50000834952 fastq.gz 3.5 GB
EGAF50000834953 bam 10.1 GB
EGAF50000834954 bam 5.2 GB
37 Files (2.1 TB)