About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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scRNA transcriptome and TCR sequencing data modeling treatment responses in eight renal cell carcinoma patient

Single cell RNA sequencing and coupled TCR sequencing data generated following immunological treatments in patient-derived ex vivo tumor models. Dataset consist of 46 sequencing samples originating from eight individual patient-derived ex vivo models. Single cell RNA and TCR sequencing data is generated using 10X Genomics platform with 5´ sequencing. The submission contains 46 Fastq files where each patient-derived ex vivo model and it's transcriptomic response to specified treatment is a unique sequencing run. TCR sequencing runs are submitted as one file per individual model, gathering all the treatment conditions.

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Access application page in SD Apply for dataset EGAD50000001934

To obtain access to data stored in FEGA Finland, we would like to inform you that access will be granted through the local access management system SD Apply. It is important to note that applications submitted via the EGA DAC portal will not be processed. For comprehensive details regarding reuse policies and other essential documentation, please visit the access application page in SD Apply. We kindly invite you to follow the provided link (next to the policy title) and submit your access application through SD Apply. Your cooperation in this matter is greatly appreciated.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000001349 RNASeq

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000444809 fastq.gz 5.5 GB
Federated EGA
EGAF50000444810 fastq.gz 6.7 GB
Federated EGA
EGAF50000444811 fastq.gz 4.1 GB
Federated EGA
EGAF50000446960 fastq.gz 745.8 MB
Federated EGA
EGAF50000446961 fastq.gz 936.0 MB
Federated EGA
EGAF50000446962 fastq.gz 2.4 GB
Federated EGA
EGAF50000446963 fastq.gz 4.5 GB
Federated EGA
EGAF50000446964 fastq.gz 90.7 MB
Federated EGA
EGAF50000446965 fastq.gz 116.3 MB
Federated EGA
EGAF50000446966 fastq.gz 255.3 MB
Federated EGA
EGAF50000446967 fastq.gz 539.1 MB
Federated EGA
EGAF50000446968 fastq.gz 209.0 MB
Federated EGA
EGAF50000446969 fastq.gz 216.8 MB
Federated EGA
EGAF50000446970 fastq.gz 532.8 MB
Federated EGA
EGAF50000446971 fastq.gz 1.3 GB
Federated EGA
EGAF50000446972 fastq.gz 1.2 GB
Federated EGA
EGAF50000446973 fastq.gz 1.2 GB
Federated EGA
EGAF50000446974 fastq.gz 3.1 GB
Federated EGA
EGAF50000446975 fastq.gz 6.7 GB
Federated EGA
EGAF50000446976 fastq.gz 1.3 GB
Federated EGA
EGAF50000446977 fastq.gz 1.7 GB
Federated EGA
EGAF50000446978 fastq.gz 4.1 GB
Federated EGA
EGAF50000446979 fastq.gz 8.4 GB
Federated EGA
EGAF50000446980 fastq.gz 848.8 MB
Federated EGA
EGAF50000446981 fastq.gz 938.2 MB
Federated EGA
EGAF50000446982 fastq.gz 2.6 GB
Federated EGA
EGAF50000446983 fastq.gz 5.2 GB
Federated EGA
EGAF50000446984 fastq.gz 746.3 MB
Federated EGA
EGAF50000446985 fastq.gz 830.0 MB
Federated EGA
EGAF50000446986 fastq.gz 2.2 GB
Federated EGA
EGAF50000446987 fastq.gz 4.6 GB
Federated EGA
EGAF50000446988 fastq.gz 1.1 GB
Federated EGA
EGAF50000446989 fastq.gz 3.2 GB
Federated EGA
EGAF50000446990 fastq.gz 7.1 GB
Federated EGA
EGAF50000446991 fastq.gz 1.3 GB
Federated EGA
EGAF50000446992 fastq.gz 5.1 GB
Federated EGA
EGAF50000446993 fastq.gz 5.7 GB
Federated EGA
EGAF50000446994 fastq.gz 6.9 GB
Federated EGA
EGAF50000446995 fastq.gz 4.0 GB
Federated EGA
EGAF50000446996 fastq.gz 4.9 GB
Federated EGA
EGAF50000446997 fastq.gz 118.3 MB
Federated EGA
EGAF50000446998 fastq.gz 163.4 MB
Federated EGA
EGAF50000446999 fastq.gz 226.8 MB
Federated EGA
EGAF50000447000 fastq.gz 299.2 MB
Federated EGA
EGAF50000447001 fastq.gz 188.2 MB
Federated EGA
EGAF50000447002 fastq.gz 250.4 MB
Federated EGA
EGAF50000447003 fastq.gz 335.5 MB
Federated EGA
EGAF50000447004 fastq.gz 427.1 MB
Federated EGA
EGAF50000447005 fastq.gz 47.8 MB
Federated EGA
EGAF50000447542 fastq.gz 78.0 MB
Federated EGA
EGAF50000447543 fastq.gz 61.8 MB
Federated EGA
EGAF50000447544 fastq.gz 97.9 MB
Federated EGA
EGAF50000447545 fastq.gz 54.0 MB
Federated EGA
EGAF50000447546 fastq.gz 86.4 MB
Federated EGA
EGAF50000447547 fastq.gz 44.5 MB
Federated EGA
EGAF50000447548 fastq.gz 73.0 MB
Federated EGA
EGAF50000447549 fastq.gz 53.0 MB
Federated EGA
EGAF50000447550 fastq.gz 84.3 MB
Federated EGA
EGAF50000448521 fastq.gz 2.0 GB
Federated EGA
EGAF50000448522 fastq.gz 2.4 GB
Federated EGA
EGAF50000448523 fastq.gz 1.3 GB
Federated EGA
EGAF50000448524 fastq.gz 1.6 GB
Federated EGA
EGAF50000448525 fastq.gz 1.6 GB
Federated EGA
EGAF50000448526 fastq.gz 2.0 GB
Federated EGA
EGAF50000448527 fastq.gz 1.4 GB
Federated EGA
EGAF50000448528 fastq.gz 1.6 GB
Federated EGA
EGAF50000448529 fastq.gz 3.3 GB
Federated EGA
EGAF50000448530 fastq.gz 3.7 GB
Federated EGA
EGAF50000448531 fastq.gz 1.3 GB
Federated EGA
EGAF50000448532 fastq.gz 1.6 GB
Federated EGA
EGAF50000448533 fastq.gz 1.0 GB
Federated EGA
EGAF50000448534 fastq.gz 1.2 GB
Federated EGA
EGAF50000448535 fastq.gz 3.4 GB
Federated EGA
EGAF50000448536 fastq.gz 3.9 GB
Federated EGA
EGAF50000448537 fastq.gz 1.1 GB
Federated EGA
EGAF50000448538 fastq.gz 1.4 GB
Federated EGA
EGAF50000448539 fastq.gz 3.5 GB
Federated EGA
EGAF50000448540 fastq.gz 3.8 GB
Federated EGA
EGAF50000448541 fastq.gz 2.7 GB
Federated EGA
EGAF50000449233 fastq.gz 3.4 GB
Federated EGA
EGAF50000449247 fastq.gz 3.0 GB
Federated EGA
EGAF50000449248 fastq.gz 3.8 GB
Federated EGA
EGAF50000449249 fastq.gz 2.6 GB
Federated EGA
EGAF50000449250 fastq.gz 3.3 GB
Federated EGA
EGAF50000449251 fastq.gz 4.4 GB
Federated EGA
EGAF50000449252 fastq.gz 5.5 GB
Federated EGA
EGAF50000449253 fastq.gz 3.9 GB
Federated EGA
EGAF50000449254 fastq.gz 4.9 GB
Federated EGA
EGAF50000449255 fastq.gz 2.8 GB
Federated EGA
EGAF50000449256 fastq.gz 3.5 GB
Federated EGA
EGAF50000449257 fastq.gz 1.7 GB
Federated EGA
EGAF50000449258 fastq.gz 2.1 GB
Federated EGA
EGAF50000449259 fastq.gz 2.9 GB
Federated EGA
EGAF50000449260 fastq.gz 3.6 GB
Federated EGA
EGAF50000449261 fastq.gz 1.7 GB
Federated EGA
EGAF50000449262 fastq.gz 2.2 GB
Federated EGA
EGAF50000449263 fastq.gz 3.4 GB
Federated EGA
EGAF50000449264 fastq.gz 4.1 GB
Federated EGA
EGAF50000449265 fastq.gz 3.2 GB
Federated EGA
EGAF50000449266 fastq.gz 3.8 GB
Federated EGA
EGAF50000449267 fastq.gz 2.2 GB
Federated EGA
EGAF50000449268 fastq.gz 2.7 GB
Federated EGA
EGAF50000449269 fastq.gz 4.4 GB
Federated EGA
EGAF50000449270 fastq.gz 5.2 GB
Federated EGA
EGAF50000449271 fastq.gz 4.1 GB
Federated EGA
EGAF50000449272 fastq.gz 4.8 GB
Federated EGA
EGAF50000449273 fastq.gz 5.6 GB
Federated EGA
EGAF50000449274 fastq.gz 6.5 GB
Federated EGA
108 Files (267.1 GB)