About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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Non-invasive bladder cancer cfDNA dataset

The dataset contains 30 primary bladder cancer patients, 28 recurrent bladder cancer patients and 31 hematuria controls. Shallow WGS of cell-free DNA enzymatic methyl sequencing libraries was performed on an Illumina Novaseq S4 PE150bp. Samples are provided as raw reads without any prior processing.

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HPV+ group DAP form

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000001350 Cancer Genomics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000477348 fastq.gz 889.7 MB
EGAF50000477349 fastq.gz 871.0 MB
EGAF50000477350 fastq.gz 2.9 GB
EGAF50000477351 fastq.gz 2.8 GB
EGAF50000477352 fastq.gz 1.4 GB
EGAF50000477353 fastq.gz 1.4 GB
EGAF50000477354 fastq.gz 1.2 GB
EGAF50000477355 fastq.gz 1.2 GB
EGAF50000477356 fastq.gz 1.6 GB
EGAF50000477357 fastq.gz 1.6 GB
EGAF50000477358 fastq.gz 1.6 GB
EGAF50000477359 fastq.gz 1.6 GB
EGAF50000477360 fastq.gz 2.0 GB
EGAF50000477361 fastq.gz 2.0 GB
EGAF50000477362 fastq.gz 1.8 GB
EGAF50000477363 fastq.gz 1.7 GB
EGAF50000477364 fastq.gz 1.1 GB
EGAF50000477365 fastq.gz 1.1 GB
EGAF50000477366 fastq.gz 1.2 GB
EGAF50000477367 fastq.gz 1.2 GB
EGAF50000477368 fastq.gz 1.3 GB
EGAF50000477369 fastq.gz 1.3 GB
EGAF50000477370 fastq.gz 1.1 GB
EGAF50000477371 fastq.gz 1.1 GB
EGAF50000477372 fastq.gz 2.0 GB
EGAF50000477373 fastq.gz 1.9 GB
EGAF50000477374 fastq.gz 2.7 GB
EGAF50000477375 fastq.gz 2.5 GB
EGAF50000477376 fastq.gz 3.5 GB
EGAF50000477377 fastq.gz 3.3 GB
EGAF50000477378 fastq.gz 4.6 GB
EGAF50000477379 fastq.gz 4.6 GB
EGAF50000477380 fastq.gz 1.5 GB
EGAF50000477381 fastq.gz 1.5 GB
EGAF50000477382 fastq.gz 4.8 GB
EGAF50000477383 fastq.gz 4.8 GB
EGAF50000477384 fastq.gz 3.6 GB
EGAF50000477385 fastq.gz 3.5 GB
EGAF50000477386 fastq.gz 4.5 GB
EGAF50000477387 fastq.gz 4.3 GB
EGAF50000477388 fastq.gz 4.3 GB
EGAF50000477389 fastq.gz 4.1 GB
EGAF50000477390 fastq.gz 4.3 GB
EGAF50000477391 fastq.gz 4.3 GB
EGAF50000477392 fastq.gz 606.6 MB
EGAF50000477393 fastq.gz 611.6 MB
EGAF50000477394 fastq.gz 1.2 GB
EGAF50000477395 fastq.gz 1.1 GB
EGAF50000477396 fastq.gz 952.4 MB
EGAF50000477397 fastq.gz 944.8 MB
EGAF50000477398 fastq.gz 2.4 GB
EGAF50000477399 fastq.gz 2.3 GB
EGAF50000477400 fastq.gz 1.9 GB
EGAF50000477401 fastq.gz 1.9 GB
EGAF50000477402 fastq.gz 655.0 MB
EGAF50000477403 fastq.gz 647.1 MB
EGAF50000477404 fastq.gz 764.8 MB
EGAF50000477405 fastq.gz 772.7 MB
EGAF50000477406 fastq.gz 723.6 MB
EGAF50000477407 fastq.gz 732.3 MB
EGAF50000477408 fastq.gz 1.2 GB
EGAF50000477409 fastq.gz 1.2 GB
EGAF50000477410 fastq.gz 1.9 GB
EGAF50000477411 fastq.gz 1.8 GB
EGAF50000477412 fastq.gz 1.4 GB
EGAF50000477413 fastq.gz 1.4 GB
EGAF50000477414 fastq.gz 1.3 GB
EGAF50000477415 fastq.gz 1.3 GB
EGAF50000477416 fastq.gz 1.2 GB
EGAF50000477417 fastq.gz 1.2 GB
EGAF50000477418 fastq.gz 1.3 GB
EGAF50000477419 fastq.gz 1.3 GB
EGAF50000477420 fastq.gz 858.0 MB
EGAF50000477421 fastq.gz 860.2 MB
EGAF50000477422 fastq.gz 265.9 MB
EGAF50000477423 fastq.gz 260.5 MB
EGAF50000477424 fastq.gz 1.6 GB
EGAF50000477425 fastq.gz 1.6 GB
EGAF50000477426 fastq.gz 566.9 MB
EGAF50000477427 fastq.gz 573.6 MB
EGAF50000477428 fastq.gz 2.0 GB
EGAF50000477429 fastq.gz 2.2 GB
EGAF50000477430 fastq.gz 4.3 GB
EGAF50000477431 fastq.gz 4.8 GB
EGAF50000477432 fastq.gz 1.5 GB
EGAF50000477433 fastq.gz 1.7 GB
EGAF50000477434 fastq.gz 1.4 GB
EGAF50000477435 fastq.gz 1.6 GB
EGAF50000477436 fastq.gz 9.0 GB
EGAF50000477437 fastq.gz 9.9 GB
EGAF50000477438 fastq.gz 4.3 GB
EGAF50000477439 fastq.gz 4.9 GB
EGAF50000477440 fastq.gz 3.0 GB
EGAF50000477441 fastq.gz 3.5 GB
EGAF50000477442 fastq.gz 4.3 GB
EGAF50000477443 fastq.gz 4.8 GB
EGAF50000477444 fastq.gz 5.6 GB
EGAF50000477445 fastq.gz 6.2 GB
EGAF50000477446 fastq.gz 5.6 GB
EGAF50000477447 fastq.gz 6.4 GB
EGAF50000477448 fastq.gz 2.6 GB
EGAF50000477449 fastq.gz 2.9 GB
EGAF50000477450 fastq.gz 2.2 GB
EGAF50000477451 fastq.gz 2.4 GB
EGAF50000477452 fastq.gz 555.0 MB
EGAF50000477453 fastq.gz 616.1 MB
EGAF50000477454 fastq.gz 4.1 GB
EGAF50000477455 fastq.gz 4.6 GB
EGAF50000477456 fastq.gz 1.7 GB
EGAF50000477457 fastq.gz 1.9 GB
EGAF50000477458 fastq.gz 4.6 GB
EGAF50000477459 fastq.gz 5.2 GB
EGAF50000477460 fastq.gz 953.3 MB
EGAF50000477461 fastq.gz 1.1 GB
EGAF50000477462 fastq.gz 4.4 GB
EGAF50000477463 fastq.gz 4.9 GB
EGAF50000477464 fastq.gz 926.4 MB
EGAF50000477465 fastq.gz 1.0 GB
EGAF50000477466 fastq.gz 601.1 MB
EGAF50000477467 fastq.gz 670.5 MB
EGAF50000477468 fastq.gz 2.1 GB
EGAF50000477469 fastq.gz 2.3 GB
EGAF50000477470 fastq.gz 2.5 GB
EGAF50000477471 fastq.gz 2.7 GB
EGAF50000477472 fastq.gz 1.3 GB
EGAF50000477473 fastq.gz 1.5 GB
EGAF50000477474 fastq.gz 1.3 GB
EGAF50000477475 fastq.gz 1.4 GB
EGAF50000477476 fastq.gz 2.0 GB
EGAF50000477477 fastq.gz 2.3 GB
EGAF50000477478 fastq.gz 3.3 GB
EGAF50000477479 fastq.gz 3.6 GB
EGAF50000477480 fastq.gz 3.9 GB
EGAF50000477481 fastq.gz 4.3 GB
EGAF50000477482 fastq.gz 247.1 MB
EGAF50000477483 fastq.gz 275.1 MB
EGAF50000477484 fastq.gz 1.4 GB
EGAF50000477485 fastq.gz 1.5 GB
EGAF50000477486 fastq.gz 1.1 GB
EGAF50000477487 fastq.gz 1.3 GB
EGAF50000477488 fastq.gz 1.4 GB
EGAF50000477489 fastq.gz 1.6 GB
EGAF50000477490 fastq.gz 1.4 GB
EGAF50000477491 fastq.gz 1.5 GB
EGAF50000477492 fastq.gz 1.5 GB
EGAF50000477493 fastq.gz 1.7 GB
EGAF50000477494 fastq.gz 957.3 MB
EGAF50000477495 fastq.gz 1.1 GB
EGAF50000477496 fastq.gz 3.7 GB
EGAF50000477497 fastq.gz 4.2 GB
EGAF50000477498 fastq.gz 5.2 GB
EGAF50000477499 fastq.gz 5.8 GB
EGAF50000477500 fastq.gz 406.6 MB
EGAF50000477501 fastq.gz 457.4 MB
EGAF50000477502 fastq.gz 522.1 MB
EGAF50000477503 fastq.gz 579.5 MB
EGAF50000477504 fastq.gz 495.8 MB
EGAF50000477505 fastq.gz 538.3 MB
EGAF50000477506 fastq.gz 1.0 GB
EGAF50000477507 fastq.gz 1.1 GB
EGAF50000477508 fastq.gz 797.2 MB
EGAF50000477509 fastq.gz 875.1 MB
EGAF50000477510 fastq.gz 1.4 GB
EGAF50000477511 fastq.gz 1.4 GB
EGAF50000477512 fastq.gz 1.2 GB
EGAF50000477513 fastq.gz 1.2 GB
EGAF50000477514 fastq.gz 645.9 MB
EGAF50000477515 fastq.gz 640.0 MB
EGAF50000477516 fastq.gz 768.3 MB
EGAF50000477517 fastq.gz 762.7 MB
EGAF50000477518 fastq.gz 751.3 MB
EGAF50000477519 fastq.gz 731.4 MB
EGAF50000477520 fastq.gz 1.4 GB
EGAF50000477521 fastq.gz 1.4 GB
EGAF50000477522 fastq.gz 1.4 GB
EGAF50000477523 fastq.gz 1.4 GB
EGAF50000477524 fastq.gz 828.0 MB
EGAF50000477525 fastq.gz 810.3 MB
EGAF50000728720 fastq.gz 3.8 GB
EGAF50000728721 fastq.gz 4.0 GB
EGAF50000728722 fastq.gz 2.9 GB
EGAF50000728723 fastq.gz 3.4 GB
EGAF50000728724 fastq.gz 2.7 GB
EGAF50000728725 fastq.gz 3.0 GB
EGAF50000728726 fastq.gz 2.8 GB
EGAF50000728727 fastq.gz 2.6 GB
EGAF50000728728 fastq.gz 3.2 GB
EGAF50000728729 fastq.gz 3.5 GB
188 Files (408.1 GB)