About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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scRNA-seq of a 3D human cortical tissue model from human iPSCs exploring 2D versus 3D co-culturing

Single-cell RNA-seq analysis of human iPSC-derived microglia/astrocytes/neurons in a novel, human in vitro 3D cortical tissue model, as well as 2D co-cultures for comparison. Samples include distinct conditions as described in the Study section. The dataset was generated using the BD Rhapsody technology and sequenced paired-end with Illumina NovaSeq2000. Information on the multiplexing of samples is reported in the Analyses section.

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Policy for "Transcriptome analysis of human iPSC-derived microglia in a novel human 3D cortical tissue model"

Access to generated data is made available by completing the data access agreement for review by the data access committee and will be granted exclusively to qualified investigators for appropriate use.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000001392 Transcriptome Analysis

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000486912 fastq.gz 40.5 GB
EGAF50000486913 fastq.gz 106.7 GB
EGAF50000486914 fastq.gz 46.0 GB
EGAF50000486915 fastq.gz 119.4 GB
EGAF50000486916 fastq.gz 41.6 GB
EGAF50000486917 fastq.gz 105.6 GB
EGAF50000486918 fastq.gz 39.4 GB
EGAF50000486919 fastq.gz 103.8 GB
EGAF50000486920 csv 4.0 kB
9 Files (603.1 GB)