About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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DCIS_FF_RNAseq

This RNAseq dataset contains full transcriptome data on n=77 pure DCIS samples. The RNA is derived from fresh-frozen DCIS samples, obtained from two hospital based cohorts (NKI cohort and Oslo cohort). The libraries were sequenced with 54 bp paired end reads using a Novaseq instrument (Illumina). We share fastq data files of paired end sequencing (two files per sample).

Request Access

Netherlands Cancer Institute - Antoni van Leeuwenhoek (NKI-AVL) general policy

Data is available under reasonable request. All data requests will be reviewed by the NKI IRB and must be supported by the Principal Investigator of the study. The researcher will need to sign a data access agreement with the NKI after approval.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000001475 Cancer Genomics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000509153 fastq.gz 779.7 MB
EGAF50000509154 fastq.gz 792.5 MB
EGAF50000509155 fastq.gz 748.1 MB
EGAF50000509156 fastq.gz 641.9 MB
EGAF50000509157 fastq.gz 750.2 MB
EGAF50000509158 fastq.gz 639.8 MB
EGAF50000509159 fastq.gz 841.9 MB
EGAF50000509160 fastq.gz 853.3 MB
EGAF50000509161 fastq.gz 646.6 MB
EGAF50000509162 fastq.gz 640.5 MB
EGAF50000509163 fastq.gz 812.2 MB
EGAF50000509164 fastq.gz 821.6 MB
EGAF50000509165 fastq.gz 1.1 GB
EGAF50000509166 fastq.gz 548.7 MB
EGAF50000509167 fastq.gz 1.1 GB
EGAF50000509168 fastq.gz 546.4 MB
EGAF50000509169 fastq.gz 1.0 GB
EGAF50000509170 fastq.gz 1.1 GB
EGAF50000509171 fastq.gz 964.0 MB
EGAF50000509172 fastq.gz 957.6 MB
EGAF50000509173 fastq.gz 746.8 MB
EGAF50000509174 fastq.gz 478.9 MB
EGAF50000509175 fastq.gz 758.1 MB
EGAF50000509176 fastq.gz 475.9 MB
EGAF50000509177 fastq.gz 750.1 MB
EGAF50000509178 fastq.gz 741.6 MB
EGAF50000509179 fastq.gz 609.9 MB
EGAF50000509180 fastq.gz 608.3 MB
EGAF50000509181 fastq.gz 775.2 MB
EGAF50000509182 fastq.gz 786.4 MB
EGAF50000509183 fastq.gz 893.9 MB
EGAF50000509184 fastq.gz 764.0 MB
EGAF50000509185 fastq.gz 911.4 MB
EGAF50000509186 fastq.gz 777.2 MB
EGAF50000509187 fastq.gz 622.6 MB
EGAF50000509188 fastq.gz 629.5 MB
EGAF50000509189 fastq.gz 646.7 MB
EGAF50000509190 fastq.gz 657.5 MB
EGAF50000509191 fastq.gz 869.1 MB
EGAF50000509192 fastq.gz 891.9 MB
EGAF50000509193 fastq.gz 608.2 MB
EGAF50000509194 fastq.gz 619.6 MB
EGAF50000509195 fastq.gz 1.1 GB
EGAF50000509196 fastq.gz 1.1 GB
EGAF50000509197 fastq.gz 895.2 MB
EGAF50000509198 fastq.gz 906.4 MB
EGAF50000509199 fastq.gz 637.9 MB
EGAF50000509200 fastq.gz 664.9 MB
EGAF50000509201 fastq.gz 640.1 MB
EGAF50000509202 fastq.gz 675.4 MB
EGAF50000509203 fastq.gz 810.2 MB
EGAF50000509204 fastq.gz 816.7 MB
EGAF50000509205 fastq.gz 685.7 MB
EGAF50000509206 fastq.gz 693.5 MB
EGAF50000509207 fastq.gz 868.3 MB
EGAF50000509208 fastq.gz 881.3 MB
EGAF50000509209 fastq.gz 1.1 GB
EGAF50000509210 fastq.gz 1.0 GB
EGAF50000509211 fastq.gz 596.6 MB
EGAF50000509212 fastq.gz 588.8 MB
EGAF50000509213 fastq.gz 860.2 MB
EGAF50000509214 fastq.gz 842.6 MB
EGAF50000509215 fastq.gz 698.0 MB
EGAF50000509216 fastq.gz 694.9 MB
EGAF50000509217 fastq.gz 538.0 MB
EGAF50000509218 fastq.gz 536.8 MB
EGAF50000509219 fastq.gz 702.8 MB
EGAF50000509220 fastq.gz 708.5 MB
EGAF50000509221 fastq.gz 793.1 MB
EGAF50000509222 fastq.gz 808.1 MB
EGAF50000509223 fastq.gz 759.9 MB
EGAF50000509224 fastq.gz 775.7 MB
EGAF50000509225 fastq.gz 635.7 MB
EGAF50000509226 fastq.gz 631.9 MB
EGAF50000509227 fastq.gz 961.8 MB
EGAF50000509228 fastq.gz 980.2 MB
EGAF50000509229 fastq.gz 1.4 GB
EGAF50000509230 fastq.gz 789.8 MB
EGAF50000509231 fastq.gz 1.4 GB
EGAF50000509232 fastq.gz 800.0 MB
EGAF50000509233 fastq.gz 857.2 MB
EGAF50000509234 fastq.gz 863.2 MB
EGAF50000509235 fastq.gz 1.2 GB
EGAF50000509236 fastq.gz 1.2 GB
EGAF50000509237 fastq.gz 951.6 MB
EGAF50000509238 fastq.gz 972.3 MB
EGAF50000509239 fastq.gz 718.3 MB
EGAF50000509240 fastq.gz 711.5 MB
EGAF50000509241 fastq.gz 870.9 MB
EGAF50000509242 fastq.gz 889.8 MB
EGAF50000509243 fastq.gz 961.7 MB
EGAF50000509244 fastq.gz 976.0 MB
EGAF50000509245 fastq.gz 837.1 MB
EGAF50000509246 fastq.gz 850.3 MB
EGAF50000509247 fastq.gz 969.7 MB
EGAF50000509248 fastq.gz 982.3 MB
EGAF50000509249 fastq.gz 646.7 MB
EGAF50000509250 fastq.gz 654.6 MB
EGAF50000509251 fastq.gz 879.0 MB
EGAF50000509252 fastq.gz 894.4 MB
EGAF50000509253 fastq.gz 768.1 MB
EGAF50000509254 fastq.gz 781.9 MB
EGAF50000509255 fastq.gz 933.3 MB
EGAF50000509256 fastq.gz 794.4 MB
EGAF50000509257 fastq.gz 939.9 MB
EGAF50000509258 fastq.gz 793.0 MB
EGAF50000509259 fastq.gz 800.8 MB
EGAF50000509260 fastq.gz 813.2 MB
EGAF50000509261 fastq.gz 786.1 MB
EGAF50000509262 fastq.gz 791.7 MB
EGAF50000509263 fastq.gz 1.1 GB
EGAF50000509264 fastq.gz 1.1 GB
EGAF50000509265 fastq.gz 876.9 MB
EGAF50000509266 fastq.gz 550.2 MB
EGAF50000509267 fastq.gz 894.6 MB
EGAF50000509268 fastq.gz 558.3 MB
EGAF50000509269 fastq.gz 775.7 MB
EGAF50000509270 fastq.gz 778.7 MB
EGAF50000509271 fastq.gz 756.6 MB
EGAF50000509272 fastq.gz 810.5 MB
EGAF50000509273 fastq.gz 761.5 MB
EGAF50000509274 fastq.gz 817.5 MB
EGAF50000509275 fastq.gz 889.3 MB
EGAF50000509276 fastq.gz 904.3 MB
EGAF50000509277 fastq.gz 733.1 MB
EGAF50000509278 fastq.gz 740.5 MB
EGAF50000509279 fastq.gz 614.9 MB
EGAF50000509280 fastq.gz 618.2 MB
EGAF50000509281 fastq.gz 773.4 MB
EGAF50000509282 fastq.gz 782.2 MB
EGAF50000509283 fastq.gz 578.5 MB
EGAF50000509284 fastq.gz 582.2 MB
EGAF50000509285 fastq.gz 744.1 MB
EGAF50000509286 fastq.gz 757.4 MB
EGAF50000509287 fastq.gz 665.4 MB
EGAF50000509288 fastq.gz 662.3 MB
EGAF50000509289 fastq.gz 708.4 MB
EGAF50000509290 fastq.gz 712.1 MB
EGAF50000509291 fastq.gz 522.4 MB
EGAF50000509292 fastq.gz 524.4 MB
EGAF50000509293 fastq.gz 1.2 GB
EGAF50000509294 fastq.gz 1.2 GB
EGAF50000509295 fastq.gz 634.5 MB
EGAF50000509296 fastq.gz 635.6 MB
EGAF50000509297 fastq.gz 914.2 MB
EGAF50000509298 fastq.gz 941.0 MB
EGAF50000509299 fastq.gz 553.7 MB
EGAF50000509300 fastq.gz 562.3 MB
EGAF50000509301 fastq.gz 717.3 MB
EGAF50000509302 fastq.gz 717.2 MB
EGAF50000509303 fastq.gz 684.1 MB
EGAF50000509304 fastq.gz 695.5 MB
EGAF50000509305 fastq.gz 1.0 GB
EGAF50000509306 fastq.gz 1.0 GB
154 Files (122.7 GB)