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BCC HHI-ICI combination therapy

Data of advanced basal cell carcinoma patients receiving hedgehog-inhibitor and immune checkpoint-inhibitor combination treatment. The single-cell RNA-sequencing data was generated via the Parse Biosciences platform from PBMC samples of 10 patients at 4 four timepoints each. The spatial transcriptomics dataset was generated using the 10x Visium platform (+CITE-seq) and contains altogether 10 biopsies at different timepoints during treatment from 3 patients. The processed matrices with the spatial images can be downloaded from: https://zenodo.org/records/17814765

Request Access

DUO:0000006
version: 2021-02-23

health or medical or biomedical research

This data use permission indicates that use is allowed for health/medical/biomedical purposes; does not include the study of population origins or ancestry.

DUO:0000018
version: 2021-02-23

not for profit, non commercial use only

This data use modifier indicates that use of the data is limited to not-for-profit organizations and not-for-profit use, non-commercial use.

Dermatology dataset policy

GDPR: This hDAA makes both parties compliant with the Regulation (EU) 2016/679 of the European Parliament and of the Council, that is, the General Data Protection Regulation (herein referred to as the ‘GDPR’). Data: Refers to controlled access data (the Data). Under this Agreement, the Data is pseudonymised. Data Access/Transfer: Refers to an Institution’s right to request access to the Data and retrieve them from the Data Controller’s Institution upon approval of this hDAA by the corresponding DAC within the Data Controller’s Institution. Data Handling: Refers to an Institution’s ability to analyse and manipulate the Data within its own computer network. Data Access Committee(s): Refers to an Institution, responsible for the generation of the Data and its pseudonymisation. A key-code permitting relinkage to Data Subjects is kept by the Data Controller(s). Data Subject: Refers to any individual who is the source of any Data covered by this Agreement. Data Recipient (‘You’): Refers to the Institution who requests Access to the Data through this Agreement. Authorised Personnel: The individual(s) at the Institution requesting Access to the Data. Research Project: The Project for which You have requested Access to the Data. Publications: Refers, without limitation, to any and all articles published in print journals, electronic journals, reviews, books, posters, and other written and verbal presentations of Research that have been accepted by peer review. Data Access Agreement In signing this agreement, you are agreeing to be bound by the terms and conditions of access set out in this agreement. In signing this Agreement: 1. You, the Data Recipient, agree to only use the Data for the Purpose of the Project. 2. You agree to use the data only for the advancement of medical research, according to the consent obtained from sample donors. 3. You agree not to use the data for the creation of products for sale or for any commercial purpose. 4. You agree to preserve, at all times, the confidentiality of information and Data pertaining to Data Subjects. In particular, you undertake not to use, or attempt to use the Data to compromise or otherwise infringe the confidentiality of information on Data Subjects and their right to privacy. 5. You agree not to attempt to link the data provided under this agreement to other information or archive data available for the data sets provided, even if access to that data has been formally granted to you, or it is freely available without restriction, without specific permission being sought from the relevant access committees. 6. You agree not to transfer or disclose the data, in whole or part, or any identifiable material derived from the Data, to others, except as necessary for data/safety monitoring or program management. Should you wish to share the Data with a collaborator, the third party must make a separate application for access to the data. 7. You agree to use the data for the approved purpose and project described in your application; use of the data for a new purpose or project will require a new application and approval. 8. You agree to acknowledge in any work based in whole or part on the data, the published paper from which the data derives, and the repository it was obtained from. 9. You accept that the Data Access Committee, the original data creators, depositors or copyright holders, or the funders of the data or any part of the data supplied: a) bear no legal responsibility for the accuracy or comprehensiveness of the data; and b) accept no liability for indirect, consequential, or incidental, damages or losses arising from use of the data, or from the unavailability of, or break in access to, the data for whatever reason. 10. You understand and acknowledge that the data is protected by copyright and other intellectual property rights, and that duplication, except as reasonably required to carry out your research with the data, or sale of all or part of the data on any media is not permitted. 11. You recognize that nothing in this agreement shall operate to transfer to the Data Recipient any intellectual property rights relating to the data. The Data Recipient has the right to develop intellectual property based on comparisons with their own data. 12. You accept that this agreement will terminate immediately upon any breach of this agreement by you, and you will be required to destroy any data held. 13. You accept that it may be necessary for the Data Access Committee or its appointed agent to alter the terms of this agreement from time to time in order to address new concerns. In this event, the Data Access Committee or its appointed agent will contact you to inform you of any changes and you agree that your continued use of the data shall be dependent on the parties entering into a new version of the Agreement. 14. You agree that you will submit a report to the Data Access Committee on completion of the agreed purpose. The Data Access Committee agrees to treat the report and all information, data, results, and conclusions contained within such report as confidential information belonging to the Data Recipient. 15. You shall ensure that ‘all’ who have Access to the Data, namely You and Your Authorised Personnel, will be listed out, and are made aware and be bound by the terms of this Agreement. You remain solely and fully responsible for Your Authorised Personnel’s non-compliance with the provision of the Agreement and/or applicable laws. 16. In case of a breach of security resulting from ‘accidental’ use of Data by You and Your Authorised Personnel, which leads to disclosure of Data, then You must report this to Data Controller(s) within 72 hours maximum, and follow any relevant rule as provided by the GDPR. 17. You accept that the data is protected by and subject to international laws, including but not limited to the Swiss Human Research Act, and that you are responsible for ensuring compliance with any such applicable law. The Data Access Committee reserves the right to request and inspect data security and management documentation to ensure the adequacy of data protection measures in countries that have no national laws comparable to that which pertain in the EAA. 18. This agreement shall be construed, interpreted and governed by the laws of Switzerland and shall be subject to the non-exclusive jurisdiction of Swiss courts. Users should note that the Data Access Committee bears no responsibility for the further analysis or interpretation of the published data.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000001481 Cancer Genomics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
EGAF50000509718 fastq.gz 33.4 GB
EGAF50000509719 fastq.gz 32.3 GB
EGAF50000509720 fastq.gz 29.7 GB
EGAF50000509721 fastq.gz 28.7 GB
EGAF50000509722 fastq.gz 31.3 GB
EGAF50000509723 fastq.gz 30.0 GB
EGAF50000509724 fastq.gz 32.6 GB
EGAF50000509725 fastq.gz 31.5 GB
EGAF50000509726 fastq.gz 33.0 GB
EGAF50000509727 fastq.gz 31.8 GB
EGAF50000509728 fastq.gz 29.5 GB
EGAF50000509729 fastq.gz 28.4 GB
EGAF50000509730 fastq.gz 32.2 GB
EGAF50000509731 fastq.gz 31.8 GB
EGAF50000509732 fastq.gz 27.1 GB
EGAF50000509733 fastq.gz 25.8 GB
EGAF50000509734 fastq.gz 23.9 GB
EGAF50000509735 fastq.gz 28.4 GB
EGAF50000509736 fastq.gz 35.8 GB
EGAF50000509737 fastq.gz 42.2 GB
EGAF50000509738 fastq.gz 9.2 GB
EGAF50000509739 fastq.gz 11.0 GB
EGAF50000509740 fastq.gz 28.7 GB
EGAF50000509741 fastq.gz 34.1 GB
EGAF50000509742 fastq.gz 7.6 GB
EGAF50000509743 fastq.gz 9.1 GB
EGAF50000509744 fastq.gz 23.8 GB
EGAF50000509745 fastq.gz 28.1 GB
EGAF50000509746 fastq.gz 7.9 GB
EGAF50000509747 fastq.gz 9.5 GB
EGAF50000509748 fastq.gz 24.8 GB
EGAF50000509749 fastq.gz 29.5 GB
EGAF50000509750 fastq.gz 23.0 GB
EGAF50000509751 fastq.gz 27.1 GB
EGAF50000509752 fastq.gz 7.0 GB
EGAF50000509753 fastq.gz 8.4 GB
EGAF50000509754 fastq.gz 9.8 GB
EGAF50000509755 fastq.gz 11.7 GB
EGAF50000509756 fastq.gz 30.8 GB
EGAF50000509757 fastq.gz 36.3 GB
EGAF50000509758 fastq.gz 18.9 GB
EGAF50000509759 fastq.gz 22.3 GB
EGAF50000509760 fastq.gz 4.5 GB
EGAF50000509761 fastq.gz 5.4 GB
EGAF50000509762 fastq.gz 790.6 MB
EGAF50000509763 fastq.gz 885.1 MB
EGAF50000509764 fastq.gz 3.2 GB
EGAF50000509765 fastq.gz 7.8 GB
EGAF50000509766 fastq.gz 179.9 MB
EGAF50000509767 fastq.gz 189.3 MB
EGAF50000509768 fastq.gz 508.9 MB
EGAF50000509769 fastq.gz 1.0 GB
EGAF50000509770 fastq.gz 1.1 GB
EGAF50000509771 fastq.gz 1.2 GB
EGAF50000509772 fastq.gz 4.8 GB
EGAF50000509773 fastq.gz 11.9 GB
EGAF50000509774 fastq.gz 172.0 MB
EGAF50000509775 fastq.gz 214.3 MB
EGAF50000509776 fastq.gz 526.4 MB
EGAF50000509777 fastq.gz 1.1 GB
EGAF50000509778 fastq.gz 2.7 GB
EGAF50000509779 fastq.gz 6.6 GB
EGAF50000509780 fastq.gz 260.4 MB
EGAF50000509781 fastq.gz 495.2 MB
EGAF50000509782 fastq.gz 3.3 GB
EGAF50000509783 fastq.gz 8.1 GB
EGAF50000509784 fastq.gz 437.9 MB
EGAF50000509785 fastq.gz 824.6 MB
68 Files (1.1 TB)