About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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RNAseq of organoid and fibroblast co-cultures

The dataset includes whole transcriptome RNAseq BAM files of both organoids and fibroblast mono- and co-cultures with have been processed by Picard markdups. The experiment featured 6 fibroblast cell lines derived from 5 different early CRC biobank patients (pt10, pt12, pt15, pt19, pt22) as well as from different regions within those samples (normal tissue, core or invasive front). The organoids were generated from patient pt5 carcinoma samples.

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DUO:0000007
version: 2021-02-23

disease specific research

This data use permission indicates that use is allowed provided it is related to the specified disease.

ModifiersMONDO:0005575

DUO:0000018
version: 2021-02-23

not for profit, non commercial use only

This data use modifier indicates that use of the data is limited to not-for-profit organizations and not-for-profit use, non-commercial use.

DUO:0000021
version: 2021-02-23

ethics approval required

This data use modifier indicates that the requestor must provide documentation of local IRB/ERB approval.

Policy for Emergence of oncofetal plasticity is ubiquitous in early colorectal cancers

Policy for Emergence of oncofetal plasticity is ubiquitous in early colorectal cancers containing RNASeq, scRNASeq and WGS data.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000001532 Cancer Genomics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000551606 fastq.gz 1.2 GB
EGAF50000551607 fastq.gz 1.1 GB
EGAF50000551608 bam 2.3 GB
EGAF50000551643 fastq.gz 1.1 GB
EGAF50000551644 fastq.gz 1.1 GB
EGAF50000551645 fastq.gz 971.6 MB
EGAF50000551646 fastq.gz 970.4 MB
EGAF50000551647 fastq.gz 871.2 MB
EGAF50000551648 fastq.gz 872.3 MB
EGAF50000551649 fastq.gz 1.0 GB
EGAF50000551650 fastq.gz 1.0 GB
EGAF50000551651 fastq.gz 992.5 MB
EGAF50000551652 fastq.gz 992.2 MB
EGAF50000551653 fastq.gz 1.1 GB
EGAF50000551654 fastq.gz 1.1 GB
EGAF50000551655 fastq.gz 944.1 MB
EGAF50000551656 fastq.gz 943.9 MB
EGAF50000551657 fastq.gz 1.0 GB
EGAF50000551658 fastq.gz 1.0 GB
EGAF50000551659 fastq.gz 997.4 MB
EGAF50000551660 fastq.gz 1.0 GB
EGAF50000551661 fastq.gz 981.2 MB
EGAF50000551662 fastq.gz 985.1 MB
EGAF50000551663 fastq.gz 1.0 GB
EGAF50000551664 fastq.gz 1.0 GB
EGAF50000551665 fastq.gz 1.0 GB
EGAF50000551666 fastq.gz 1.0 GB
EGAF50000551667 fastq.gz 970.5 MB
EGAF50000551668 fastq.gz 970.2 MB
EGAF50000551669 fastq.gz 960.8 MB
EGAF50000551670 fastq.gz 960.0 MB
EGAF50000551671 fastq.gz 1.0 GB
EGAF50000551672 fastq.gz 1.0 GB
EGAF50000551673 fastq.gz 1.0 GB
EGAF50000551674 fastq.gz 1.0 GB
EGAF50000551675 fastq.gz 973.1 MB
EGAF50000551676 fastq.gz 972.0 MB
EGAF50000551677 fastq.gz 1.0 GB
EGAF50000551678 fastq.gz 1.0 GB
EGAF50000551679 fastq.gz 1.0 GB
EGAF50000551680 fastq.gz 1.0 GB
EGAF50000551681 fastq.gz 1.0 GB
EGAF50000551682 fastq.gz 1.0 GB
EGAF50000551683 fastq.gz 1.0 GB
EGAF50000551684 fastq.gz 1.0 GB
EGAF50000551685 fastq.gz 1.0 GB
EGAF50000551686 fastq.gz 1.0 GB
EGAF50000551687 fastq.gz 994.7 MB
EGAF50000551688 fastq.gz 992.3 MB
EGAF50000551689 fastq.gz 1.0 GB
EGAF50000551690 fastq.gz 998.9 MB
EGAF50000551691 fastq.gz 981.0 MB
EGAF50000551692 fastq.gz 978.4 MB
EGAF50000551693 fastq.gz 1.0 GB
EGAF50000551694 fastq.gz 1.0 GB
EGAF50000551695 fastq.gz 1.2 GB
EGAF50000551696 fastq.gz 1.2 GB
EGAF50000551697 fastq.gz 1.1 GB
EGAF50000551698 fastq.gz 1.1 GB
EGAF50000551699 fastq.gz 991.3 MB
EGAF50000551700 fastq.gz 995.6 MB
EGAF50000551701 fastq.gz 1.1 GB
EGAF50000551702 fastq.gz 1.1 GB
EGAF50000551703 bam 2.3 GB
EGAF50000551704 bam 2.1 GB
EGAF50000551705 bam 1.9 GB
EGAF50000551706 bam 2.2 GB
EGAF50000551707 bam 2.2 GB
EGAF50000551708 bam 2.5 GB
EGAF50000551709 bam 2.0 GB
EGAF50000551710 bam 2.3 GB
EGAF50000551711 bam 2.1 GB
EGAF50000551712 bam 2.1 GB
EGAF50000551713 bam 2.2 GB
EGAF50000551714 bam 2.2 GB
EGAF50000551715 bam 2.0 GB
EGAF50000551716 bam 2.1 GB
EGAF50000551717 bam 2.2 GB
EGAF50000551718 bam 2.1 GB
EGAF50000551719 bam 2.1 GB
EGAF50000551720 bam 2.2 GB
EGAF50000551721 bam 2.1 GB
EGAF50000551722 bam 2.1 GB
EGAF50000551723 bam 2.0 GB
EGAF50000551724 bam 2.1 GB
EGAF50000551725 bam 2.1 GB
EGAF50000551726 bam 2.0 GB
EGAF50000551727 bam 2.0 GB
EGAF50000551728 bam 2.0 GB
EGAF50000551729 bam 2.4 GB
EGAF50000551730 bam 2.3 GB
EGAF50000551731 bam 2.1 GB
EGAF50000551732 bam 2.3 GB
93 Files (129.5 GB)