About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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Bulk RNA sequencing of 36 multi-region IPMN–PDAC tumours comprising 160 sequencing runs

This dataset contains bulk RNA sequencing data generated from 36 multi-region tumour samples obtained from patients with intraductal papillary mucinous neoplasms (IPMN) and associated pancreatic ductal adenocarcinoma (PDAC). A total of 160 sequencing runs are included. Libraries were prepared from poly(A)-selected RNA and sequenced on an Illumina platform. The data are provided as raw sequencing files for downstream transcriptomic analyses.

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Access Policy for the IPMN-PDAC Whole Genome Sequencing Dataset

This dataset is available through controlled access managed by the IPMN-PDAC Whole Genome Sequencing DAC. Access will be granted only to qualified researchers conducting legitimate biomedical research that is consistent with the informed consent provided by study participants and the approved data use conditions. Applicants must submit a data access request describing the proposed research and agree to comply with the applicable Data Access Agreement (DAA), ethical requirements, and institutional regulations. Approved data users must: • Use the data only for the approved research purposes. • Protect the confidentiality and privacy of study participants. • Not attempt to identify or re-identify individual participants. • Implement appropriate technical and organisational measures for the secure storage and processing of the data. • Acknowledge the data source and dataset accession in all publications and presentations. • Comply with all applicable ethical, legal, and institutional requirements. The data must not be redistributed, transferred, or shared with third parties without prior approval from the DAC. The DAC will review all data access requests and reserves the right to approve, reject, modify, or revoke access where appropriate.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000001540 Transcriptome Analysis
  • Link to the Access policy for WGS Data from 42 Multi-Region Sampled IPMN-PDACs and 12 Matched Normal Samples (the same samples from the the project)
  • Dataset Released

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000558645 fastq.gz 932.8 MB
EGAF50000558646 fastq.gz 1.1 GB
EGAF50000558647 fastq.gz 940.5 MB
EGAF50000558648 fastq.gz 1.5 GB
EGAF50000558649 fastq.gz 2.0 GB
EGAF50000558650 fastq.gz 1.4 GB
EGAF50000558651 fastq.gz 1.5 GB
EGAF50000558652 fastq.gz 1.2 GB
EGAF50000558653 fastq.gz 1.0 GB
EGAF50000558654 fastq.gz 1.4 GB
EGAF50000558655 fastq.gz 1.1 GB
EGAF50000558656 fastq.gz 1.8 GB
EGAF50000558657 fastq.gz 1.4 GB
EGAF50000558658 fastq.gz 1.9 GB
EGAF50000558659 fastq.gz 4.0 GB
EGAF50000558660 fastq.gz 2.1 GB
EGAF50000558661 fastq.gz 1.4 GB
EGAF50000558662 fastq.gz 2.1 GB
EGAF50000558663 fastq.gz 2.3 GB
EGAF50000558664 fastq.gz 2.4 GB
EGAF50000558665 fastq.gz 6.1 GB
EGAF50000558666 fastq.gz 10.9 GB
EGAF50000558667 fastq.gz 1.8 GB
EGAF50000558668 fastq.gz 1.4 GB
EGAF50000558669 fastq.gz 1.4 GB
EGAF50000558670 fastq.gz 32.6 MB
EGAF50000558671 fastq.gz 32.9 MB
EGAF50000558672 fastq.gz 33.1 MB
EGAF50000558673 fastq.gz 1.1 GB
EGAF50000558674 fastq.gz 893.3 MB
EGAF50000558675 fastq.gz 2.2 GB
EGAF50000558676 fastq.gz 891.0 MB
EGAF50000558677 fastq.gz 937.1 MB
EGAF50000558678 fastq.gz 1.1 GB
EGAF50000558679 fastq.gz 1.2 GB
EGAF50000558680 fastq.gz 10.3 GB
EGAF50000558681 fastq.gz 2.2 GB
EGAF50000558682 fastq.gz 2.3 GB
EGAF50000558683 fastq.gz 1.0 GB
EGAF50000558684 fastq.gz 1.4 GB
EGAF50000558685 fastq.gz 1.8 GB
EGAF50000558686 fastq.gz 3.8 GB
EGAF50000558687 fastq.gz 4.1 GB
EGAF50000558688 fastq.gz 10.2 GB
EGAF50000558689 fastq.gz 10.6 MB
EGAF50000558690 fastq.gz 1.5 GB
EGAF50000558691 fastq.gz 1.5 GB
EGAF50000558692 fastq.gz 4.4 GB
EGAF50000558693 fastq.gz 1.9 GB
EGAF50000558694 fastq.gz 1.1 GB
EGAF50000558695 fastq.gz 1.9 GB
EGAF50000558696 fastq.gz 2.6 GB
EGAF50000558697 fastq.gz 1.3 GB
EGAF50000558698 fastq.gz 3.2 GB
EGAF50000558699 fastq.gz 3.3 GB
EGAF50000558700 fastq.gz 1.7 GB
EGAF50000558701 fastq.gz 1.4 GB
EGAF50000558702 fastq.gz 4.2 GB
EGAF50000558703 fastq.gz 2.9 GB
EGAF50000558704 fastq.gz 1.2 GB
EGAF50000558705 fastq.gz 1.3 GB
EGAF50000558706 fastq.gz 939.9 MB
EGAF50000558707 fastq.gz 33.4 MB
EGAF50000558708 fastq.gz 1.0 GB
EGAF50000558709 fastq.gz 1.4 GB
EGAF50000558710 fastq.gz 1.4 GB
EGAF50000558711 fastq.gz 1.5 GB
EGAF50000558712 fastq.gz 3.2 GB
EGAF50000558713 fastq.gz 3.3 GB
EGAF50000558714 fastq.gz 2.5 GB
EGAF50000558715 fastq.gz 2.3 GB
EGAF50000558716 fastq.gz 5.9 GB
EGAF50000558717 fastq.gz 1.8 GB
EGAF50000558718 fastq.gz 2.3 GB
EGAF50000558719 fastq.gz 2.0 GB
EGAF50000558720 fastq.gz 2.1 GB
EGAF50000558721 fastq.gz 1.9 GB
EGAF50000558722 fastq.gz 5.9 GB
EGAF50000558723 fastq.gz 6.1 GB
EGAF50000558724 fastq.gz 10.9 GB
EGAF50000558725 fastq.gz 4.1 GB
EGAF50000558726 fastq.gz 4.3 GB
EGAF50000558727 fastq.gz 2.0 GB
EGAF50000558728 fastq.gz 2.0 GB
EGAF50000558729 fastq.gz 2.0 GB
EGAF50000558730 fastq.gz 2.0 GB
EGAF50000558731 fastq.gz 1.9 GB
EGAF50000558732 fastq.gz 1.7 GB
EGAF50000558733 fastq.gz 1.5 GB
EGAF50000558734 fastq.gz 1.4 GB
EGAF50000558735 fastq.gz 1.1 GB
EGAF50000558736 fastq.gz 1.2 GB
EGAF50000558737 fastq.gz 1.1 GB
EGAF50000558738 fastq.gz 1.2 GB
EGAF50000558739 fastq.gz 1.4 GB
EGAF50000558740 fastq.gz 1.5 GB
EGAF50000558741 fastq.gz 10.9 MB
EGAF50000558742 fastq.gz 10.7 MB
EGAF50000558743 fastq.gz 11.1 MB
EGAF50000558744 fastq.gz 1.2 GB
EGAF50000558745 fastq.gz 1.3 GB
EGAF50000558746 fastq.gz 1.3 GB
EGAF50000558747 fastq.gz 1.3 GB
EGAF50000558748 fastq.gz 1.3 GB
EGAF50000558749 fastq.gz 1.0 GB
EGAF50000558750 fastq.gz 1.1 GB
EGAF50000558751 fastq.gz 1.4 GB
EGAF50000558752 fastq.gz 1.4 GB
EGAF50000558753 fastq.gz 1.4 GB
EGAF50000558754 fastq.gz 1.1 GB
EGAF50000558755 fastq.gz 1.1 GB
EGAF50000558756 fastq.gz 1.1 GB
EGAF50000558757 fastq.gz 1.8 GB
EGAF50000558758 fastq.gz 1.9 GB
EGAF50000558759 fastq.gz 1.7 GB
EGAF50000558760 fastq.gz 1.8 GB
EGAF50000558761 fastq.gz 1.8 GB
EGAF50000558762 fastq.gz 1.8 GB
EGAF50000558763 fastq.gz 3.9 GB
EGAF50000558764 fastq.gz 4.2 GB
EGAF50000558765 fastq.gz 1.5 GB
EGAF50000558766 fastq.gz 1.5 GB
EGAF50000558767 fastq.gz 2.5 GB
EGAF50000558768 fastq.gz 2.5 GB
EGAF50000558769 fastq.gz 2.5 GB
EGAF50000558770 fastq.gz 1.8 GB
EGAF50000558771 fastq.gz 1.8 GB
EGAF50000558772 fastq.gz 3.8 GB
EGAF50000558773 fastq.gz 3.8 GB
EGAF50000558774 fastq.gz 4.0 GB
EGAF50000558775 fastq.gz 2.3 GB
EGAF50000558776 fastq.gz 2.5 GB
EGAF50000558777 fastq.gz 2.3 GB
EGAF50000558778 fastq.gz 2.5 GB
EGAF50000558779 fastq.gz 1.5 GB
EGAF50000558780 fastq.gz 1.3 GB
EGAF50000558781 fastq.gz 1.3 GB
EGAF50000558782 fastq.gz 1.3 GB
EGAF50000558783 fastq.gz 1.1 GB
EGAF50000558784 fastq.gz 1.1 GB
EGAF50000558785 fastq.gz 1.1 GB
EGAF50000558786 fastq.gz 902.1 MB
EGAF50000558787 fastq.gz 1.3 GB
EGAF50000558788 fastq.gz 946.6 MB
EGAF50000558789 fastq.gz 896.4 MB
EGAF50000558790 fastq.gz 1.4 GB
EGAF50000558791 fastq.gz 1.5 GB
EGAF50000558792 fastq.gz 1.4 GB
EGAF50000558793 fastq.gz 4.1 GB
EGAF50000558794 fastq.gz 4.3 GB
EGAF50000558795 fastq.gz 4.1 GB
EGAF50000558796 fastq.gz 4.3 GB
EGAF50000558797 fastq.gz 2.8 GB
EGAF50000558798 fastq.gz 2.9 GB
EGAF50000558799 fastq.gz 2.8 GB
EGAF50000558800 fastq.gz 957.3 MB
EGAF50000558801 fastq.gz 1.6 GB
EGAF50000558802 fastq.gz 1.6 GB
EGAF50000558803 fastq.gz 952.4 MB
EGAF50000558804 fastq.gz 927.8 MB
160 Files (341.4 GB)