Bleomycin Induced Pneumonitis WGS dataset
This is whole genome sequencing data from a cohort of 18 patients with germ cell tumours or Hodgkin Lymphoma, who developed clinically significant bleomycin-induced pneumonitis despite low clinical risk. DNA was extracted from whole blood, and 150-base paired-end reads were generated on an Illumina NovaSeq 6000 instrument to a minimum 30x depth. Sequence reads were aligned to the GRCh38 reference with BWA MEM, and germline variants were called following GATK best practice procedures. The dataset comprises per-sample read alignment files in BAM format, and a joint-called germline variant file in VCF format.
- 27/02/2026
- 18 samples
- DAC: EGAC50000000791
- Archive: European Genome-phenome Archive (EGA)
DUO:0000006 version: 2021-02-23
health or medical or biomedical research
This data use permission indicates that use is allowed for health/medical/biomedical purposes; does not include the study of population origins or ancestry.
DUO:0000045 version: 2021-02-23
not for profit organisation use only
This data use modifier indicates that use of the data is limited to not-for-profit organizations.
Bleomycin Induced Pneumonitis cohort of Exceptional Responders Program DAA v1
Make an application for access to this dataset through the REMS system at the Garvan Institute of Medical Research: https://rems.public.garvan.org.au/catalogue The Data Access Agreement form can be accessed once a REMS application has been started.
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS50000001545 | Whole Genome Sequencing |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Quality Report |
Located in
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|---|---|---|---|---|
| EGAF50000559102 | bai | 9.6 MB |
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| EGAF50000559103 | bam | 89.3 GB |
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| EGAF50000559104 | bai | 9.6 MB |
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| EGAF50000559105 | bam | 72.5 GB |
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| EGAF50000559106 | bam | 87.5 GB |
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| EGAF50000559107 | bai | 9.6 MB |
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| EGAF50000559108 | bam | 55.7 GB |
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| EGAF50000559109 | bai | 9.5 MB |
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| EGAF50000559110 | bai | 9.6 MB |
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| EGAF50000559111 | bam | 85.8 GB |
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| EGAF50000559112 | bai | 9.5 MB |
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| EGAF50000559113 | bam | 75.0 GB |
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| EGAF50000559114 | bai | 9.5 MB |
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| EGAF50000559115 | bam | 64.6 GB |
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| EGAF50000559116 | bam | 73.0 GB |
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| EGAF50000559117 | bai | 9.5 MB |
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| EGAF50000559118 | bai | 9.6 MB |
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| EGAF50000559119 | bam | 78.1 GB |
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| EGAF50000559120 | bai | 9.6 MB |
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| EGAF50000559121 | bam | 81.7 GB |
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| EGAF50000559122 | bam | 73.7 GB |
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| EGAF50000559123 | bai | 9.6 MB |
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| EGAF50000559124 | vcf.gz | 2.6 GB | Report |
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| EGAF50000559125 | tbi | 2.3 MB |
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| EGAF50000559126 | bai | 9.6 MB |
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| EGAF50000559127 | bam | 78.8 GB |
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| EGAF50000559128 | bam | 54.4 GB |
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| EGAF50000559129 | bai | 9.5 MB |
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| EGAF50000559130 | bai | 9.6 MB |
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| EGAF50000559131 | bam | 85.9 GB |
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| EGAF50000559132 | bai | 9.6 MB |
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| EGAF50000559133 | bam | 87.8 GB |
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| EGAF50000559134 | bai | 9.6 MB |
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| EGAF50000559135 | bam | 79.3 GB |
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| EGAF50000559136 | bam | 80.7 GB |
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| EGAF50000559137 | bai | 9.6 MB |
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| EGAF50000559138 | bai | 9.6 MB |
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| EGAF50000559139 | bam | 88.1 GB |
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| 38 Files (1.4 TB) | ||||