About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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Transcriptomics for LUNG-NSCLC2 cohort

The goal of IMMUcan is to understand how the immune system interacts with tumors and how therapeutic interventions influence this interaction. This cohort includes patients with non-small cell lung cancer who had surgical resection. This is a subcohort of the EORTC SPECTAlung study. This dataset contains transcriptomics data processed with the STAR pipeline. Two sequencing kits were employed: Roche KAPA for high-quality RNA samples and Takara SMART-Seq Stranded for samples with limited RNA quantities.

Request Access

DUO:0000007
version: 2021-02-23

disease specific research

This data use permission indicates that use is allowed provided it is related to the specified disease.

ModifiersMONDO:0045054

DUO:0000019
version: 2021-02-23

publication required

This data use modifier indicates that requestor agrees to make results of studies using the data available to the larger scientific community.

DUO:0000021
version: 2021-02-23

ethics approval required

This data use modifier indicates that the requestor must provide documentation of local IRB/ERB approval.

DUO:0000026
version: 2021-02-23

user specific restriction

This data use modifier indicates that use is limited to use by approved users.

DUO:0000027
version: 2021-02-23

project specific restriction

This data use modifier indicates that use is limited to use within an approved project.

DUO:0000028
version: 2021-02-23

institution specific restriction

This data use modifier indicates that use is limited to use within an approved institution.

Terms of use to access IMMUcan data v1.0

The applicant needs to agree with the Terms of use to access IMMUcan data through EGA.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000001558 Cancer Genomics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000568604 txt 1.2 MB
EGAF50000568605 txt 1.2 MB
EGAF50000568606 txt 1.2 MB
EGAF50000568607 txt 1.2 MB
EGAF50000568608 txt 1.2 MB
EGAF50000568609 txt 1.2 MB
EGAF50000568610 txt 1.2 MB
EGAF50000568611 txt 1.2 MB
EGAF50000568612 txt 1.2 MB
EGAF50000568613 txt 1.2 MB
EGAF50000568614 txt 1.2 MB
EGAF50000568615 txt 1.2 MB
EGAF50000568616 txt 1.2 MB
EGAF50000568617 txt 1.2 MB
EGAF50000568618 txt 1.2 MB
EGAF50000568619 txt 1.2 MB
EGAF50000568620 txt 1.2 MB
EGAF50000568621 txt 1.2 MB
EGAF50000568622 txt 1.2 MB
EGAF50000568623 txt 1.2 MB
EGAF50000568624 txt 1.2 MB
EGAF50000568625 txt 1.2 MB
EGAF50000568626 txt 1.2 MB
EGAF50000568627 txt 1.2 MB
EGAF50000568628 txt 1.2 MB
EGAF50000568629 txt 1.2 MB
EGAF50000568630 txt 1.2 MB
EGAF50000568631 txt 1.2 MB
EGAF50000568632 txt 1.2 MB
EGAF50000568633 txt 1.2 MB
EGAF50000568634 txt 1.2 MB
EGAF50000568635 txt 1.2 MB
EGAF50000568636 txt 1.2 MB
EGAF50000568637 txt 1.2 MB
EGAF50000568638 txt 1.2 MB
EGAF50000568639 txt 1.2 MB
EGAF50000568640 txt 1.2 MB
EGAF50000568641 txt 1.2 MB
EGAF50000568642 txt 1.2 MB
EGAF50000568643 txt 1.2 MB
EGAF50000568644 txt 1.2 MB
EGAF50000568645 txt 1.2 MB
EGAF50000568646 txt 1.2 MB
EGAF50000568647 txt 1.2 MB
EGAF50000568648 txt 1.2 MB
EGAF50000568649 txt 1.2 MB
EGAF50000568650 txt 1.2 MB
EGAF50000568651 txt 1.2 MB
EGAF50000568652 txt 1.2 MB
EGAF50000568653 txt 1.2 MB
EGAF50000568654 txt 1.2 MB
EGAF50000568655 txt 1.2 MB
EGAF50000568656 txt 1.2 MB
EGAF50000568657 txt 1.2 MB
EGAF50000568658 txt 1.2 MB
EGAF50000568659 txt 1.2 MB
EGAF50000568660 txt 1.2 MB
EGAF50000568661 txt 1.2 MB
EGAF50000568662 txt 1.2 MB
EGAF50000568663 txt 1.2 MB
EGAF50000568664 txt 1.2 MB
EGAF50000568665 txt 1.2 MB
EGAF50000568666 txt 1.2 MB
EGAF50000568667 txt 1.2 MB
EGAF50000568668 txt 1.2 MB
EGAF50000568669 txt 1.2 MB
EGAF50000568670 txt 1.2 MB
EGAF50000568671 txt 1.2 MB
EGAF50000568672 txt 1.2 MB
EGAF50000568673 txt 1.2 MB
EGAF50000568674 txt 1.2 MB
EGAF50000568675 txt 1.2 MB
EGAF50000568676 txt 1.2 MB
EGAF50000568677 txt 1.2 MB
EGAF50000568678 txt 1.2 MB
EGAF50000568679 txt 1.2 MB
EGAF50000568680 txt 1.2 MB
EGAF50000568681 txt 1.2 MB
EGAF50000568682 txt 1.2 MB
EGAF50000568683 txt 1.2 MB
EGAF50000568684 txt 1.2 MB
EGAF50000568685 txt 1.2 MB
EGAF50000568686 txt 1.2 MB
EGAF50000568687 txt 1.2 MB
EGAF50000568688 txt 1.2 MB
EGAF50000568689 txt 1.2 MB
EGAF50000568690 txt 1.2 MB
EGAF50000568691 txt 1.2 MB
EGAF50000568692 txt 1.2 MB
EGAF50000568693 txt 1.2 MB
EGAF50000568694 txt 1.2 MB
EGAF50000568695 txt 1.2 MB
EGAF50000568696 txt 1.2 MB
EGAF50000568697 txt 1.2 MB
EGAF50000568698 txt 1.2 MB
EGAF50000568699 txt 1.2 MB
EGAF50000568700 txt 1.2 MB
EGAF50000568701 txt 1.2 MB
EGAF50000568702 txt 1.2 MB
EGAF50000568703 txt 1.2 MB
EGAF50000568704 txt 1.2 MB
EGAF50000568705 txt 1.2 MB
EGAF50000568706 txt 1.2 MB
EGAF50000568707 txt 1.2 MB
EGAF50000568708 txt 1.2 MB
EGAF50000568709 txt 1.2 MB
EGAF50000568710 txt 1.2 MB
EGAF50000568711 txt 1.2 MB
EGAF50000568712 txt 1.2 MB
EGAF50000568713 txt 1.2 MB
EGAF50000568714 txt 1.2 MB
EGAF50000568715 txt 1.2 MB
EGAF50000568716 txt 1.2 MB
EGAF50000568717 txt 1.2 MB
EGAF50000568718 txt 1.2 MB
EGAF50000568719 txt 1.2 MB
EGAF50000568720 txt 1.2 MB
EGAF50000568721 txt 1.2 MB
EGAF50000568722 txt 1.2 MB
EGAF50000568723 txt 1.2 MB
EGAF50000568724 txt 1.2 MB
EGAF50000568725 txt 1.2 MB
EGAF50000568726 txt 1.2 MB
EGAF50000568727 txt 1.2 MB
EGAF50000568728 txt 1.2 MB
EGAF50000569110 fastq.gz 4.8 GB
EGAF50000569111 fastq.gz 9.1 GB
EGAF50000569112 fastq.gz 10.7 GB
EGAF50000569113 fastq.gz 9.0 GB
EGAF50000569114 fastq.gz 7.1 GB
EGAF50000569115 fastq.gz 5.5 GB
EGAF50000569116 fastq.gz 10.8 GB
EGAF50000569117 fastq.gz 5.1 GB
EGAF50000569118 fastq.gz 4.4 GB
EGAF50000569119 fastq.gz 6.2 GB
EGAF50000569120 fastq.gz 8.5 GB
EGAF50000569121 fastq.gz 6.6 GB
EGAF50000569122 fastq.gz 4.7 GB
EGAF50000569123 fastq.gz 10.7 GB
EGAF50000569124 fastq.gz 10.4 GB
EGAF50000569125 fastq.gz 5.7 GB
EGAF50000569126 fastq.gz 7.5 GB
EGAF50000569127 fastq.gz 6.0 GB
EGAF50000569128 fastq.gz 6.0 GB
EGAF50000569129 fastq.gz 9.1 GB
EGAF50000569130 fastq.gz 10.6 GB
EGAF50000569131 fastq.gz 5.1 GB
EGAF50000569132 fastq.gz 6.4 GB
EGAF50000569133 fastq.gz 6.1 GB
EGAF50000569134 fastq.gz 5.7 GB
EGAF50000569135 fastq.gz 10.4 GB
EGAF50000569136 fastq.gz 5.1 GB
EGAF50000569137 fastq.gz 7.8 GB
EGAF50000569138 fastq.gz 6.4 GB
EGAF50000569139 fastq.gz 7.7 GB
EGAF50000569140 fastq.gz 9.4 GB
EGAF50000569141 fastq.gz 5.8 GB
EGAF50000569142 fastq.gz 4.3 GB
EGAF50000569143 fastq.gz 6.3 GB
EGAF50000569144 fastq.gz 7.8 GB
EGAF50000569145 fastq.gz 5.3 GB
EGAF50000569146 fastq.gz 5.5 GB
EGAF50000569147 fastq.gz 6.1 GB
EGAF50000569148 fastq.gz 5.8 GB
EGAF50000569149 fastq.gz 6.7 GB
EGAF50000569150 fastq.gz 9.0 GB
EGAF50000569151 fastq.gz 5.1 GB
EGAF50000569152 fastq.gz 9.7 GB
EGAF50000569153 fastq.gz 4.5 GB
EGAF50000569154 fastq.gz 6.4 GB
EGAF50000569155 fastq.gz 7.5 GB
EGAF50000569156 fastq.gz 4.7 GB
EGAF50000569157 fastq.gz 7.8 GB
EGAF50000569158 fastq.gz 6.9 GB
EGAF50000569159 fastq.gz 5.9 GB
EGAF50000569160 fastq.gz 4.6 GB
EGAF50000569161 fastq.gz 7.7 GB
EGAF50000569162 fastq.gz 8.2 GB
EGAF50000569163 fastq.gz 5.1 GB
EGAF50000569164 fastq.gz 8.3 GB
EGAF50000569165 fastq.gz 5.0 GB
EGAF50000569166 fastq.gz 5.0 GB
EGAF50000569167 fastq.gz 7.7 GB
EGAF50000569168 fastq.gz 6.0 GB
EGAF50000569169 fastq.gz 9.0 GB
EGAF50000569170 fastq.gz 9.2 GB
EGAF50000569171 fastq.gz 4.9 GB
EGAF50000569172 fastq.gz 5.3 GB
EGAF50000569173 fastq.gz 9.0 GB
EGAF50000569174 fastq.gz 11.0 GB
EGAF50000569175 fastq.gz 6.6 GB
EGAF50000569176 fastq.gz 8.7 GB
EGAF50000569177 fastq.gz 5.6 GB
EGAF50000569178 fastq.gz 8.5 GB
EGAF50000569179 fastq.gz 7.2 GB
EGAF50000569180 fastq.gz 5.4 GB
EGAF50000569181 fastq.gz 9.0 GB
EGAF50000569182 fastq.gz 10.2 GB
EGAF50000569183 fastq.gz 5.6 GB
EGAF50000569184 fastq.gz 9.0 GB
EGAF50000569185 fastq.gz 4.6 GB
EGAF50000569186 fastq.gz 4.7 GB
EGAF50000569187 fastq.gz 5.4 GB
EGAF50000569188 fastq.gz 5.8 GB
EGAF50000569189 fastq.gz 6.8 GB
EGAF50000569190 fastq.gz 7.2 GB
EGAF50000569191 fastq.gz 6.7 GB
EGAF50000569193 fastq.gz 4.9 GB
EGAF50000569194 fastq.gz 5.9 GB
EGAF50000569195 fastq.gz 5.7 GB
EGAF50000569196 fastq.gz 5.6 GB
EGAF50000569197 fastq.gz 7.8 GB
EGAF50000569198 fastq.gz 10.6 GB
EGAF50000569199 fastq.gz 4.7 GB
EGAF50000569200 fastq.gz 5.0 GB
EGAF50000569201 fastq.gz 6.3 GB
EGAF50000569202 fastq.gz 6.4 GB
EGAF50000569203 fastq.gz 10.9 GB
EGAF50000569204 fastq.gz 8.4 GB
EGAF50000569205 fastq.gz 6.2 GB
EGAF50000569206 fastq.gz 4.5 GB
EGAF50000569207 fastq.gz 13.0 GB
EGAF50000569208 fastq.gz 10.5 GB
EGAF50000569209 fastq.gz 5.4 GB
EGAF50000569210 fastq.gz 11.0 GB
EGAF50000569211 fastq.gz 10.0 GB
EGAF50000569212 fastq.gz 6.4 GB
EGAF50000569213 fastq.gz 6.1 GB
EGAF50000569214 fastq.gz 9.3 GB
EGAF50000569215 fastq.gz 11.1 GB
EGAF50000569216 fastq.gz 8.9 GB
EGAF50000569217 fastq.gz 8.4 GB
EGAF50000569218 fastq.gz 4.6 GB
EGAF50000569219 fastq.gz 5.4 GB
EGAF50000569220 fastq.gz 6.1 GB
EGAF50000569221 fastq.gz 6.0 GB
EGAF50000569222 fastq.gz 5.5 GB
EGAF50000569223 fastq.gz 5.6 GB
EGAF50000569224 fastq.gz 8.1 GB
EGAF50000569225 fastq.gz 12.1 GB
EGAF50000569226 fastq.gz 4.9 GB
EGAF50000569227 fastq.gz 6.8 GB
EGAF50000569228 fastq.gz 6.0 GB
EGAF50000569229 fastq.gz 7.7 GB
EGAF50000569230 fastq.gz 7.0 GB
EGAF50000569231 fastq.gz 7.7 GB
EGAF50000569232 fastq.gz 4.1 GB
EGAF50000569233 fastq.gz 4.8 GB
EGAF50000569234 fastq.gz 5.6 GB
EGAF50000569235 fastq.gz 4.6 GB
EGAF50000569236 fastq.gz 11.4 GB
EGAF50000569237 fastq.gz 8.7 GB
EGAF50000569238 fastq.gz 11.1 GB
EGAF50000569239 fastq.gz 6.0 GB
EGAF50000569240 fastq.gz 5.2 GB
EGAF50000569241 fastq.gz 5.5 GB
EGAF50000569242 fastq.gz 6.6 GB
EGAF50000569243 fastq.gz 8.0 GB
EGAF50000569244 fastq.gz 6.8 GB
EGAF50000569245 fastq.gz 8.0 GB
EGAF50000569246 fastq.gz 8.5 GB
EGAF50000569247 fastq.gz 13.5 GB
EGAF50000569248 fastq.gz 5.2 GB
EGAF50000569249 fastq.gz 7.7 GB
EGAF50000569250 fastq.gz 4.6 GB
EGAF50000569251 fastq.gz 4.2 GB
EGAF50000569252 fastq.gz 7.1 GB
EGAF50000569253 fastq.gz 4.8 GB
EGAF50000569254 fastq.gz 4.8 GB
EGAF50000569255 fastq.gz 8.1 GB
EGAF50000569256 fastq.gz 5.9 GB
EGAF50000569257 fastq.gz 7.6 GB
EGAF50000569258 fastq.gz 10.5 GB
EGAF50000569259 fastq.gz 13.6 GB
EGAF50000569260 fastq.gz 7.9 GB
EGAF50000569261 fastq.gz 5.5 GB
EGAF50000569262 fastq.gz 4.5 GB
EGAF50000569263 fastq.gz 6.5 GB
EGAF50000569264 fastq.gz 7.3 GB
EGAF50000569265 fastq.gz 5.7 GB
EGAF50000569266 fastq.gz 7.8 GB
EGAF50000569267 fastq.gz 8.6 GB
EGAF50000569268 fastq.gz 5.4 GB
EGAF50000569269 fastq.gz 8.3 GB
EGAF50000569270 fastq.gz 11.8 GB
EGAF50000569271 fastq.gz 4.7 GB
EGAF50000569272 fastq.gz 5.8 GB
EGAF50000569273 fastq.gz 5.1 GB
EGAF50000569274 fastq.gz 8.2 GB
EGAF50000569275 fastq.gz 5.1 GB
EGAF50000569276 fastq.gz 7.3 GB
EGAF50000569277 fastq.gz 5.5 GB
EGAF50000569278 fastq.gz 5.7 GB
EGAF50000569279 fastq.gz 6.2 GB
EGAF50000569280 fastq.gz 5.4 GB
EGAF50000569281 fastq.gz 7.2 GB
EGAF50000569282 fastq.gz 4.9 GB
EGAF50000569283 fastq.gz 5.6 GB
EGAF50000569284 fastq.gz 6.3 GB
EGAF50000569285 fastq.gz 5.9 GB
EGAF50000569286 fastq.gz 4.9 GB
EGAF50000569287 fastq.gz 7.3 GB
EGAF50000569288 fastq.gz 6.3 GB
EGAF50000569289 fastq.gz 8.1 GB
EGAF50000569290 fastq.gz 5.9 GB
EGAF50000569291 fastq.gz 5.0 GB
EGAF50000569292 fastq.gz 10.7 GB
EGAF50000569293 fastq.gz 6.1 GB
EGAF50000569294 fastq.gz 4.6 GB
EGAF50000569295 fastq.gz 9.2 GB
EGAF50000569296 fastq.gz 8.3 GB
EGAF50000569297 fastq.gz 4.7 GB
EGAF50000569298 fastq.gz 4.7 GB
EGAF50000569299 fastq.gz 9.0 GB
EGAF50000569300 fastq.gz 5.6 GB
EGAF50000569301 fastq.gz 9.4 GB
EGAF50000569302 fastq.gz 4.6 GB
EGAF50000569303 fastq.gz 7.6 GB
EGAF50000569304 fastq.gz 8.4 GB
EGAF50000569305 fastq.gz 7.9 GB
EGAF50000569306 fastq.gz 6.6 GB
EGAF50000569307 fastq.gz 7.1 GB
EGAF50000569308 fastq.gz 6.0 GB
EGAF50000569309 fastq.gz 6.3 GB
EGAF50000569310 fastq.gz 4.7 GB
EGAF50000569311 fastq.gz 5.4 GB
EGAF50000569312 fastq.gz 4.5 GB
EGAF50000569313 fastq.gz 7.1 GB
EGAF50000569314 fastq.gz 9.1 GB
EGAF50000569315 fastq.gz 5.3 GB
EGAF50000569316 fastq.gz 6.9 GB
EGAF50000569317 fastq.gz 5.0 GB
EGAF50000569318 fastq.gz 6.9 GB
EGAF50000569319 fastq.gz 5.9 GB
EGAF50000569320 fastq.gz 6.3 GB
EGAF50000569321 fastq.gz 5.7 GB
EGAF50000569322 fastq.gz 8.8 GB
EGAF50000569323 fastq.gz 5.6 GB
EGAF50000569324 fastq.gz 8.8 GB
EGAF50000569325 fastq.gz 6.1 GB
EGAF50000569326 fastq.gz 8.0 GB
EGAF50000569327 fastq.gz 5.7 GB
EGAF50000569328 fastq.gz 7.5 GB
EGAF50000569329 fastq.gz 6.6 GB
EGAF50000569330 fastq.gz 8.9 GB
EGAF50000569331 fastq.gz 11.0 GB
EGAF50000569332 fastq.gz 7.4 GB
EGAF50000569333 fastq.gz 9.4 GB
EGAF50000569334 fastq.gz 9.2 GB
EGAF50000569335 fastq.gz 7.2 GB
EGAF50000569336 fastq.gz 5.8 GB
EGAF50000569337 fastq.gz 4.9 GB
EGAF50000569338 fastq.gz 6.8 GB
EGAF50000569339 fastq.gz 5.0 GB
EGAF50000569340 fastq.gz 4.5 GB
EGAF50000569341 fastq.gz 8.5 GB
EGAF50000569342 fastq.gz 6.3 GB
EGAF50000569343 fastq.gz 8.8 GB
EGAF50000569344 fastq.gz 13.2 GB
EGAF50000569345 fastq.gz 5.5 GB
EGAF50000569346 fastq.gz 4.7 GB
EGAF50000569347 fastq.gz 6.3 GB
EGAF50000569348 fastq.gz 10.9 GB
EGAF50000569349 fastq.gz 6.6 GB
EGAF50000569350 fastq.gz 7.4 GB
EGAF50000569351 fastq.gz 8.9 GB
EGAF50000569352 fastq.gz 4.7 GB
EGAF50000569353 fastq.gz 8.3 GB
EGAF50000569354 fastq.gz 5.4 GB
EGAF50000569355 fastq.gz 7.0 GB
EGAF50000569356 fastq.gz 6.9 GB
EGAF50000569357 fastq.gz 8.5 GB
EGAF50000569358 fastq.gz 8.4 GB
EGAF50000569359 fastq.gz 8.5 GB
EGAF50000569360 fastq.gz 8.3 GB
375 Files (1.8 TB)