About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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Bulk RNA-sequencing of baseline tumor tissues (batch 6353, batch 6864 & batch 7408)

Bulk RNA-seq was performed on 31 baseline tumor samples. Samples were sequenced in three batches: batch 6353 (n=13), batch 6864 (n=15), and batch 7408 (n=3). Batch 6353 was sequenced (single-end, 65 base pairs) on a HiSeq2500 system and batch 6864 and batch 7408 were sequenced (paired-end, 51 base pairs) on a NovaSeq6000 system.

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Netherlands Cancer Institute - Antoni van Leeuwenhoek (NKI-AVL) general policy

Data is available under reasonable request. All data requests will be reviewed by the NKI IRB and must be supported by the Principal Investigator of the study. The researcher will need to sign a data access agreement with the NKI after approval.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000001571 RNASeq

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000572192 fastq.gz 1.7 GB
EGAF50000572193 fastq.gz 1.2 GB
EGAF50000572194 fastq.gz 1.5 GB
EGAF50000572195 fastq.gz 863.1 MB
EGAF50000572196 fastq.gz 2.3 GB
EGAF50000572197 fastq.gz 3.2 GB
EGAF50000572198 fastq.gz 1.9 GB
EGAF50000572199 fastq.gz 2.4 GB
EGAF50000572200 fastq.gz 1.2 GB
EGAF50000572201 fastq.gz 1.1 GB
EGAF50000572202 fastq.gz 1.1 GB
EGAF50000572203 fastq.gz 2.1 GB
EGAF50000572204 fastq.gz 2.9 GB
EGAF50000572205 fastq.gz 578.8 MB
EGAF50000572206 fastq.gz 1.0 GB
EGAF50000572207 fastq.gz 645.8 MB
EGAF50000572208 fastq.gz 651.4 MB
EGAF50000572209 fastq.gz 634.1 MB
EGAF50000572210 fastq.gz 645.8 MB
EGAF50000572211 fastq.gz 1.2 GB
EGAF50000572212 fastq.gz 1.2 GB
EGAF50000572213 fastq.gz 511.0 MB
EGAF50000572214 fastq.gz 520.7 MB
EGAF50000572215 fastq.gz 587.9 MB
EGAF50000572216 fastq.gz 594.0 MB
EGAF50000572217 fastq.gz 743.0 MB
EGAF50000572218 fastq.gz 764.7 MB
EGAF50000572219 fastq.gz 592.7 MB
EGAF50000572220 fastq.gz 591.5 MB
EGAF50000572221 fastq.gz 1.5 GB
EGAF50000572222 fastq.gz 1.5 GB
EGAF50000572223 fastq.gz 1.3 GB
EGAF50000572224 fastq.gz 1.3 GB
EGAF50000572225 fastq.gz 780.6 MB
EGAF50000572226 fastq.gz 713.9 MB
EGAF50000572227 fastq.gz 790.4 MB
EGAF50000572228 fastq.gz 724.2 MB
EGAF50000572229 fastq.gz 1.0 GB
EGAF50000572230 fastq.gz 1.1 GB
EGAF50000572231 fastq.gz 940.3 MB
EGAF50000572232 fastq.gz 514.3 MB
EGAF50000572233 fastq.gz 957.5 MB
EGAF50000572234 fastq.gz 526.1 MB
EGAF50000572235 fastq.gz 731.5 MB
EGAF50000572236 fastq.gz 723.4 MB
EGAF50000572237 fastq.gz 1.1 GB
EGAF50000572238 fastq.gz 1.1 GB
EGAF50000572239 fastq.gz 1.1 GB
EGAF50000572240 fastq.gz 1.1 GB
49 Files (54.2 GB)