About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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Bulk RNAseq of FFPE and FF tissues at baseline and on-treatment

Bulk transcriptomics for investigating transcriptomic biomarkers related to response at baseline and exploring treatment dynamics in transcriptomic signatures to gain a better understanding of the effects of ICB on the urothelial cancer tumor microenvironment (TME).

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Netherlands Cancer Institute - Antoni van Leeuwenhoek (NKI-AVL) general policy

Data is available under reasonable request. All data requests will be reviewed by the NKI IRB and must be supported by the Principal Investigator of the study. The researcher will need to sign a data access agreement with the NKI after approval.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000001574 Transcriptome Sequencing

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000574223 fastq.gz 1.3 GB
EGAF50000574224 fastq.gz 455.1 MB
EGAF50000574225 fastq.gz 1.3 GB
EGAF50000574226 fastq.gz 466.8 MB
EGAF50000574227 fastq.gz 1.1 GB
EGAF50000574228 fastq.gz 1.0 GB
EGAF50000574229 fastq.gz 857.9 MB
EGAF50000574230 fastq.gz 878.4 MB
EGAF50000574231 fastq.gz 1.1 GB
EGAF50000574232 fastq.gz 1.2 GB
EGAF50000574233 fastq.gz 606.8 MB
EGAF50000574234 fastq.gz 621.8 MB
EGAF50000574235 fastq.gz 715.6 MB
EGAF50000574236 fastq.gz 729.3 MB
EGAF50000574237 fastq.gz 628.5 MB
EGAF50000574238 fastq.gz 650.7 MB
EGAF50000574239 fastq.gz 589.3 MB
EGAF50000574240 fastq.gz 608.1 MB
EGAF50000574241 fastq.gz 447.7 MB
EGAF50000574242 fastq.gz 457.0 MB
EGAF50000574243 fastq.gz 1.1 GB
EGAF50000574244 fastq.gz 1.1 GB
EGAF50000574245 fastq.gz 994.4 MB
EGAF50000574246 fastq.gz 1.2 GB
EGAF50000574247 fastq.gz 658.3 MB
EGAF50000574248 fastq.gz 1.2 GB
EGAF50000574249 fastq.gz 675.7 MB
EGAF50000574250 fastq.gz 1.6 GB
EGAF50000574251 fastq.gz 1.6 GB
EGAF50000574252 fastq.gz 741.5 MB
EGAF50000574253 fastq.gz 720.1 MB
EGAF50000574254 fastq.gz 996.9 MB
EGAF50000574255 fastq.gz 1.0 GB
EGAF50000574256 fastq.gz 843.2 MB
EGAF50000574257 fastq.gz 866.5 MB
EGAF50000574258 fastq.gz 874.7 MB
EGAF50000574259 fastq.gz 906.5 MB
EGAF50000574260 fastq.gz 1.1 GB
EGAF50000574261 fastq.gz 1.1 GB
EGAF50000574262 fastq.gz 921.8 MB
EGAF50000574263 fastq.gz 948.1 MB
EGAF50000574264 fastq.gz 1.0 GB
EGAF50000574265 fastq.gz 1.0 GB
EGAF50000574266 fastq.gz 727.9 MB
EGAF50000574267 fastq.gz 749.3 MB
EGAF50000574268 fastq.gz 1.1 GB
EGAF50000574269 fastq.gz 1.1 GB
EGAF50000574270 fastq.gz 636.8 MB
EGAF50000574271 fastq.gz 656.9 MB
EGAF50000574272 fastq.gz 677.7 MB
EGAF50000574273 fastq.gz 690.0 MB
EGAF50000574274 fastq.gz 683.5 MB
EGAF50000574275 fastq.gz 665.3 MB
EGAF50000574276 fastq.gz 654.3 MB
EGAF50000574277 fastq.gz 671.4 MB
EGAF50000574278 fastq.gz 589.9 MB
EGAF50000574279 fastq.gz 603.5 MB
EGAF50000574280 fastq.gz 1.0 GB
EGAF50000574281 fastq.gz 980.5 MB
EGAF50000574282 fastq.gz 1.0 GB
EGAF50000574283 fastq.gz 1.1 GB
EGAF50000574284 fastq.gz 622.5 MB
EGAF50000574285 fastq.gz 637.9 MB
EGAF50000574286 fastq.gz 854.9 MB
EGAF50000574287 fastq.gz 880.1 MB
EGAF50000574288 fastq.gz 757.5 MB
EGAF50000574289 fastq.gz 779.5 MB
EGAF50000574290 fastq.gz 840.8 MB
EGAF50000574291 fastq.gz 863.3 MB
EGAF50000574292 fastq.gz 1.0 GB
EGAF50000574293 fastq.gz 1.1 GB
EGAF50000574294 fastq.gz 885.1 MB
EGAF50000574295 fastq.gz 917.9 MB
EGAF50000574296 fastq.gz 474.9 MB
EGAF50000574297 fastq.gz 463.8 MB
EGAF50000574298 fastq.gz 752.5 MB
EGAF50000574299 fastq.gz 771.4 MB
EGAF50000574300 fastq.gz 900.1 MB
EGAF50000574301 fastq.gz 932.1 MB
EGAF50000574302 fastq.gz 749.6 MB
EGAF50000574303 fastq.gz 770.0 MB
EGAF50000574304 fastq.gz 579.6 MB
EGAF50000574305 fastq.gz 474.3 MB
EGAF50000574306 fastq.gz 593.0 MB
EGAF50000574307 fastq.gz 484.8 MB
EGAF50000574308 fastq.gz 1.7 GB
EGAF50000574309 fastq.gz 1.7 GB
EGAF50000574310 fastq.gz 850.8 MB
EGAF50000574311 fastq.gz 874.7 MB
EGAF50000574312 fastq.gz 721.2 MB
EGAF50000574313 fastq.gz 701.0 MB
EGAF50000574314 fastq.gz 756.7 MB
EGAF50000574315 fastq.gz 799.4 MB
EGAF50000574316 fastq.gz 731.5 MB
EGAF50000574317 fastq.gz 780.8 MB
EGAF50000574318 fastq.gz 794.2 MB
EGAF50000574319 fastq.gz 813.0 MB
EGAF50000574320 fastq.gz 891.7 MB
EGAF50000574321 fastq.gz 910.7 MB
EGAF50000574322 fastq.gz 1.1 GB
EGAF50000574323 fastq.gz 1.1 GB
EGAF50000574324 fastq.gz 620.0 MB
EGAF50000574325 fastq.gz 633.7 MB
EGAF50000574326 fastq.gz 1.2 GB
EGAF50000574327 fastq.gz 524.6 MB
EGAF50000574328 fastq.gz 1.2 GB
EGAF50000574329 fastq.gz 543.8 MB
EGAF50000574330 fastq.gz 936.8 MB
EGAF50000574331 fastq.gz 970.9 MB
EGAF50000574332 fastq.gz 1.1 GB
EGAF50000574333 fastq.gz 400.2 MB
EGAF50000574334 fastq.gz 1.1 GB
EGAF50000574335 fastq.gz 410.4 MB
EGAF50000574336 fastq.gz 1.3 GB
EGAF50000574337 fastq.gz 1.4 GB
EGAF50000574338 fastq.gz 836.4 MB
EGAF50000574339 fastq.gz 862.0 MB
EGAF50000574340 fastq.gz 959.7 MB
EGAF50000574341 fastq.gz 1.0 GB
EGAF50000574342 fastq.gz 848.9 MB
EGAF50000574343 fastq.gz 873.1 MB
EGAF50000574344 fastq.gz 827.4 MB
EGAF50000574345 fastq.gz 808.0 MB
EGAF50000574346 fastq.gz 955.9 MB
EGAF50000574347 fastq.gz 975.0 MB
EGAF50000574348 fastq.gz 901.4 MB
EGAF50000574349 fastq.gz 927.9 MB
EGAF50000574350 fastq.gz 1.1 GB
EGAF50000574351 fastq.gz 1.1 GB
EGAF50000574352 fastq.gz 967.3 MB
130 Files (112.8 GB)