About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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Single-cell RNA sequencing of Small Intestinal Neuroendocrine Tumors (SI-NET)

Single-cell RNA sequencing (scRNA-seq) was performed on cells isolated from intestinal mucosa and small intestinal neuroendocrine tumors (SI-NETs) to compare their transcriptomic profiles. Tumor and adjacent normal tissues were collected from two SI-NET patients, enzymatically dissociated, and processed into single-cell suspensions. Single-cell libraries were generated using the Chromium Single Cell 3′ Reagent Kit v3 and sequenced on an Illumina platform to produce FASTQ files for downstream analysis.

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Uppsala University Data Access Policy

By depositing data in the FEGA repository, researchers at Uppsala University aim to contribute to science and advance discoveries in biomedicine, healthcare and other fields. Deposited data in the FEGA repository is regarded as sensitive personal information. The current interpretation of Swedish laws and regulations only allows Uppsala University to approve release of datasets to researchers in Sweden that have an ethics approval from Swedish Ethical Review Authority to perform research on the requested datasets in FEGA. For researchers not affiliated to a higher education institution in Sweden it is possible, provided access is permitted, to access and analyse data using the support at Uppsala University. Analysis may be done with the help of personnel from the National Bioinformatics Infrastructure Sweden and the computational resources available at the Uppsala University supercomputing centre. Data may, however, not be transferred outside of Uppsala University.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000001584 RNASeq

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
EGAF50000498612 fastq.gz 588.4 MB
EGAF50000498613 fastq.gz 589.2 MB
EGAF50000498614 fastq.gz 1.4 GB
EGAF50000498615 fastq.gz 1.4 GB
EGAF50000498616 fastq.gz 665.7 MB
EGAF50000498617 fastq.gz 664.6 MB
EGAF50000498618 fastq.gz 1.5 GB
EGAF50000498619 fastq.gz 1.5 GB
EGAF50000498620 fastq.gz 644.8 MB
EGAF50000498621 fastq.gz 1.5 GB
EGAF50000498622 fastq.gz 1.5 GB
EGAF50000498623 fastq.gz 643.5 MB
EGAF50000498624 fastq.gz 1.3 GB
EGAF50000498625 fastq.gz 560.7 MB
EGAF50000498626 fastq.gz 1.3 GB
EGAF50000498627 fastq.gz 561.0 MB
EGAF50000498628 fastq.gz 1.8 GB
EGAF50000498629 fastq.gz 1.8 GB
EGAF50000498630 fastq.gz 789.0 MB
EGAF50000498631 fastq.gz 788.6 MB
EGAF50000498632 fastq.gz 594.8 MB
EGAF50000498633 fastq.gz 1.3 GB
EGAF50000498634 fastq.gz 593.7 MB
EGAF50000498635 fastq.gz 1.4 GB
EGAF50000498636 fastq.gz 750.4 MB
EGAF50000498637 fastq.gz 749.1 MB
EGAF50000498638 fastq.gz 657.7 MB
EGAF50000498639 fastq.gz 1.7 GB
EGAF50000498640 fastq.gz 1.5 GB
EGAF50000498641 fastq.gz 657.4 MB
EGAF50000498642 fastq.gz 1.7 GB
EGAF50000498643 fastq.gz 522.1 MB
EGAF50000498644 fastq.gz 523.6 MB
EGAF50000498645 fastq.gz 1.5 GB
EGAF50000498646 fastq.gz 1.2 GB
EGAF50000498647 fastq.gz 1.2 GB
EGAF50000498648 fastq.gz 589.5 MB
EGAF50000498649 fastq.gz 1.3 GB
EGAF50000498650 fastq.gz 1.3 GB
EGAF50000498651 fastq.gz 588.4 MB
EGAF50000498652 fastq.gz 624.9 MB
EGAF50000498653 fastq.gz 624.4 MB
EGAF50000498654 fastq.gz 727.7 MB
EGAF50000498655 fastq.gz 1.4 GB
EGAF50000498656 fastq.gz 727.0 MB
EGAF50000498657 fastq.gz 1.4 GB
EGAF50000498658 fastq.gz 1.7 GB
EGAF50000498659 fastq.gz 704.8 MB
EGAF50000498660 fastq.gz 1.7 GB
EGAF50000498661 fastq.gz 703.3 MB
EGAF50000498662 fastq.gz 1.6 GB
EGAF50000498663 fastq.gz 1.6 GB
EGAF50000498664 fastq.gz 1.7 GB
EGAF50000498665 fastq.gz 1.7 GB
EGAF50000498666 fastq.gz 1.1 GB
EGAF50000498667 fastq.gz 1.1 GB
EGAF50000498668 fastq.gz 733.2 MB
EGAF50000498669 fastq.gz 731.1 MB
EGAF50000498670 fastq.gz 465.9 MB
EGAF50000498671 fastq.gz 465.2 MB
EGAF50000498672 fastq.gz 1.7 GB
EGAF50000498673 fastq.gz 1.7 GB
EGAF50000498674 fastq.gz 751.0 MB
EGAF50000498675 fastq.gz 752.9 MB
64 Files (68.2 GB)