About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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Single-cell RNA sequencing of Small Intestinal Neuroendocrine Tumors (SI-NET)

Single-cell RNA sequencing (scRNA-seq) was performed on cells isolated from intestinal mucosa and small intestinal neuroendocrine tumors (SI-NETs) to compare their transcriptomic profiles. Tumor and adjacent normal tissues were collected from two SI-NET patients, enzymatically dissociated, and processed into single-cell suspensions. Single-cell libraries were generated using the Chromium Single Cell 3′ Reagent Kit v3 and sequenced on an Illumina platform to produce FASTQ files for downstream analysis.

Request Access

Uppsala University Data Access Policy

By depositing data in the FEGA repository, researchers at Uppsala University aims to contribute to science and advance discoveries in biomedicine, healthcare and other fields. Requests for access to data will be assessed based on Swedish laws and regulations, and are only accepted if data will be used for research. For requests from researchers outside the European Union, data will normally only be released to countries that the European Union considers to have an adequate level of data protection, see list of countries here: https://commission.europa.eu/law/law-topic/data-protection/international-dimension-data-protection/adequacy-decisions_en Requests must include information about the following aspects: - As genetic data is regarded as sensitive personal information, a request must describe how the data will be correctly handled in accordance to the laws and ethical guidelines in the receiving country. That should include an approval from an ethics committee or reference to national/equivalent guidelines. - Researchers in the European Union must specify the legal basis according to the General Data Protection Regulation (GDPR) to use the data. - Information on how data will be stored and handled in relation to the information security procedures at the receiving organization. Before data can be released the requester must be prepared to sign a “Warrant to respect” and a “Data Transfer Agreement” specifying the conditions that needs to be fulfilled for data to be released. Requesters need to be aware of that assessment of requests and preparation of agreements may be subject to lead times.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000001584 RNASeq

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000498612 fastq.gz 588.4 MB
Federated EGA
EGAF50000498613 fastq.gz 589.2 MB
Federated EGA
EGAF50000498614 fastq.gz 1.4 GB
Federated EGA
EGAF50000498615 fastq.gz 1.4 GB
Federated EGA
EGAF50000498616 fastq.gz 665.7 MB
Federated EGA
EGAF50000498617 fastq.gz 664.6 MB
Federated EGA
EGAF50000498618 fastq.gz 1.5 GB
Federated EGA
EGAF50000498619 fastq.gz 1.5 GB
Federated EGA
EGAF50000498620 fastq.gz 644.8 MB
Federated EGA
EGAF50000498621 fastq.gz 1.5 GB
Federated EGA
EGAF50000498622 fastq.gz 1.5 GB
Federated EGA
EGAF50000498623 fastq.gz 643.5 MB
Federated EGA
EGAF50000498624 fastq.gz 1.3 GB
Federated EGA
EGAF50000498625 fastq.gz 560.7 MB
Federated EGA
EGAF50000498626 fastq.gz 1.3 GB
Federated EGA
EGAF50000498627 fastq.gz 561.0 MB
Federated EGA
EGAF50000498628 fastq.gz 1.8 GB
Federated EGA
EGAF50000498629 fastq.gz 1.8 GB
Federated EGA
EGAF50000498630 fastq.gz 789.0 MB
Federated EGA
EGAF50000498631 fastq.gz 788.6 MB
Federated EGA
EGAF50000498632 fastq.gz 594.8 MB
Federated EGA
EGAF50000498633 fastq.gz 1.3 GB
Federated EGA
EGAF50000498634 fastq.gz 593.7 MB
Federated EGA
EGAF50000498635 fastq.gz 1.4 GB
Federated EGA
EGAF50000498636 fastq.gz 750.4 MB
Federated EGA
EGAF50000498637 fastq.gz 749.1 MB
Federated EGA
EGAF50000498638 fastq.gz 657.7 MB
Federated EGA
EGAF50000498639 fastq.gz 1.7 GB
Federated EGA
EGAF50000498640 fastq.gz 1.5 GB
Federated EGA
EGAF50000498641 fastq.gz 657.4 MB
Federated EGA
EGAF50000498642 fastq.gz 1.7 GB
Federated EGA
EGAF50000498643 fastq.gz 522.1 MB
Federated EGA
EGAF50000498644 fastq.gz 523.6 MB
Federated EGA
EGAF50000498645 fastq.gz 1.5 GB
Federated EGA
EGAF50000498646 fastq.gz 1.2 GB
Federated EGA
EGAF50000498647 fastq.gz 1.2 GB
Federated EGA
EGAF50000498648 fastq.gz 589.5 MB
Federated EGA
EGAF50000498649 fastq.gz 1.3 GB
Federated EGA
EGAF50000498650 fastq.gz 1.3 GB
Federated EGA
EGAF50000498651 fastq.gz 588.4 MB
Federated EGA
EGAF50000498652 fastq.gz 624.9 MB
Federated EGA
EGAF50000498653 fastq.gz 624.4 MB
Federated EGA
EGAF50000498654 fastq.gz 727.7 MB
Federated EGA
EGAF50000498655 fastq.gz 1.4 GB
Federated EGA
EGAF50000498656 fastq.gz 727.0 MB
Federated EGA
EGAF50000498657 fastq.gz 1.4 GB
Federated EGA
EGAF50000498658 fastq.gz 1.7 GB
Federated EGA
EGAF50000498659 fastq.gz 704.8 MB
Federated EGA
EGAF50000498660 fastq.gz 1.7 GB
Federated EGA
EGAF50000498661 fastq.gz 703.3 MB
Federated EGA
EGAF50000498662 fastq.gz 1.6 GB
Federated EGA
EGAF50000498663 fastq.gz 1.6 GB
Federated EGA
EGAF50000498664 fastq.gz 1.7 GB
Federated EGA
EGAF50000498665 fastq.gz 1.7 GB
Federated EGA
EGAF50000498666 fastq.gz 1.1 GB
Federated EGA
EGAF50000498667 fastq.gz 1.1 GB
Federated EGA
EGAF50000498668 fastq.gz 733.2 MB
Federated EGA
EGAF50000498669 fastq.gz 731.1 MB
Federated EGA
EGAF50000498670 fastq.gz 465.9 MB
Federated EGA
EGAF50000498671 fastq.gz 465.2 MB
Federated EGA
EGAF50000498672 fastq.gz 1.7 GB
Federated EGA
EGAF50000498673 fastq.gz 1.7 GB
Federated EGA
EGAF50000498674 fastq.gz 751.0 MB
Federated EGA
EGAF50000498675 fastq.gz 752.9 MB
Federated EGA
64 Files (68.2 GB)