About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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Transcriptomics for IMMU-BC1 cohort

The goal of IMMUcan is to understand how the immune system interacts with tumors and how therapeutic interventions influence this interaction. This cohort includes metastatic Triple Negative Breast Cancer (mTNBC) patients, naïve of treatment in the metastatic settings, treated in 1st line with chemotherapy or chemo-immunotherapy This dataset contains transcriptomics data processed with the STAR pipeline. Two sequencing kits were employed: Roche KAPA for high-quality RNA samples and Takara SMART-Seq Stranded for samples with limited RNA quantities. It contains gene-level counts.

Request Access

DUO:0000007
version: 2021-02-23

disease specific research

This data use permission indicates that use is allowed provided it is related to the specified disease.

ModifiersMONDO:0045054

DUO:0000019
version: 2021-02-23

publication required

This data use modifier indicates that requestor agrees to make results of studies using the data available to the larger scientific community.

DUO:0000021
version: 2021-02-23

ethics approval required

This data use modifier indicates that the requestor must provide documentation of local IRB/ERB approval.

DUO:0000026
version: 2021-02-23

user specific restriction

This data use modifier indicates that use is limited to use by approved users.

DUO:0000027
version: 2021-02-23

project specific restriction

This data use modifier indicates that use is limited to use within an approved project.

DUO:0000028
version: 2021-02-23

institution specific restriction

This data use modifier indicates that use is limited to use within an approved institution.

Terms of use to access IMMUcan data v2.0

The applicant needs to agree with the Terms of use to access IMMUcan data through EGA.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000001587 Cancer Genomics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000576084 txt 1.2 MB
EGAF50000576085 txt 1.2 MB
EGAF50000576087 txt 1.2 MB
EGAF50000576088 txt 1.2 MB
EGAF50000576089 txt 1.3 MB
EGAF50000576090 txt 1.2 MB
EGAF50000576091 txt 1.2 MB
EGAF50000576092 txt 1.2 MB
EGAF50000576094 txt 1.2 MB
EGAF50000576095 txt 1.2 MB
EGAF50000576096 txt 1.2 MB
EGAF50000576097 txt 1.2 MB
EGAF50000576098 txt 1.2 MB
EGAF50000576099 txt 1.2 MB
EGAF50000576100 txt 1.2 MB
EGAF50000576101 txt 1.2 MB
EGAF50000576102 txt 1.2 MB
EGAF50000576103 txt 1.2 MB
EGAF50000576104 txt 1.2 MB
EGAF50000576105 txt 1.2 MB
EGAF50000576106 txt 1.2 MB
EGAF50000576107 txt 1.2 MB
EGAF50000576108 txt 1.2 MB
EGAF50000576109 txt 1.2 MB
EGAF50000576110 txt 1.2 MB
EGAF50000576111 txt 1.2 MB
EGAF50000576112 txt 1.2 MB
EGAF50000576113 txt 1.2 MB
EGAF50000576114 txt 1.2 MB
EGAF50000576115 txt 1.2 MB
EGAF50000576116 txt 1.2 MB
EGAF50000576117 txt 1.2 MB
EGAF50000576118 txt 1.2 MB
EGAF50000576119 fastq.gz 2.9 GB
EGAF50000576120 txt 1.2 MB
EGAF50000576122 fastq.gz 9.8 GB
EGAF50000576123 fastq.gz 7.1 GB
EGAF50000576124 fastq.gz 5.9 GB
EGAF50000576125 fastq.gz 6.0 GB
EGAF50000576126 fastq.gz 7.7 GB
EGAF50000576127 fastq.gz 8.1 GB
EGAF50000576128 fastq.gz 10.8 GB
EGAF50000576129 fastq.gz 4.5 GB
EGAF50000576130 fastq.gz 4.7 GB
EGAF50000576131 fastq.gz 5.1 GB
EGAF50000576132 fastq.gz 12.1 GB
EGAF50000576133 fastq.gz 7.4 GB
EGAF50000576134 fastq.gz 8.7 GB
EGAF50000576135 fastq.gz 6.0 GB
EGAF50000576136 fastq.gz 6.1 GB
EGAF50000576137 fastq.gz 11.6 GB
EGAF50000576138 fastq.gz 3.5 GB
EGAF50000576139 fastq.gz 6.3 GB
EGAF50000576140 fastq.gz 2.9 GB
EGAF50000576141 fastq.gz 5.9 GB
EGAF50000576142 fastq.gz 7.4 GB
EGAF50000576143 fastq.gz 10.0 GB
EGAF50000576144 fastq.gz 6.8 GB
EGAF50000576145 fastq.gz 4.7 GB
EGAF50000576146 fastq.gz 19.1 GB
EGAF50000576147 fastq.gz 7.7 GB
EGAF50000576148 fastq.gz 12.0 GB
EGAF50000576149 fastq.gz 8.4 GB
EGAF50000576150 fastq.gz 4.9 GB
EGAF50000576151 fastq.gz 5.4 GB
EGAF50000576152 fastq.gz 9.1 GB
EGAF50000576153 fastq.gz 5.4 GB
EGAF50000576154 fastq.gz 6.8 GB
EGAF50000576155 fastq.gz 9.2 GB
EGAF50000576156 fastq.gz 6.1 GB
EGAF50000576157 fastq.gz 5.2 GB
EGAF50000576158 fastq.gz 8.3 GB
EGAF50000576159 fastq.gz 11.0 GB
EGAF50000576160 fastq.gz 11.7 GB
EGAF50000576161 fastq.gz 4.5 GB
EGAF50000576162 fastq.gz 4.7 GB
EGAF50000576163 fastq.gz 7.9 GB
EGAF50000576164 fastq.gz 7.9 GB
EGAF50000576165 fastq.gz 6.2 GB
EGAF50000576166 fastq.gz 6.4 GB
EGAF50000576167 fastq.gz 7.5 GB
EGAF50000576168 fastq.gz 7.5 GB
EGAF50000576169 fastq.gz 2.9 GB
EGAF50000576170 fastq.gz 7.1 GB
EGAF50000576171 fastq.gz 18.0 GB
EGAF50000576172 fastq.gz 6.4 GB
EGAF50000576173 fastq.gz 7.3 GB
EGAF50000576174 fastq.gz 10.4 GB
EGAF50000576175 fastq.gz 4.9 GB
EGAF50000576176 fastq.gz 8.4 GB
EGAF50000576177 fastq.gz 10.1 GB
EGAF50000576178 fastq.gz 5.0 GB
EGAF50000576179 fastq.gz 7.9 GB
EGAF50000576180 fastq.gz 8.1 GB
EGAF50000576181 fastq.gz 3.0 GB
EGAF50000576182 fastq.gz 11.2 GB
EGAF50000576183 fastq.gz 5.2 GB
EGAF50000576184 fastq.gz 4.7 GB
EGAF50000576185 fastq.gz 4.8 GB
EGAF50000576186 fastq.gz 3.4 GB
EGAF50000576187 fastq.gz 4.6 GB
EGAF50000576188 fastq.gz 10.7 GB
102 Files (499.2 GB)