About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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Variant calling for IMMU-BC1 cohort

The goal of IMMUcan is to understand how the immune system interacts with tumors and how therapeutic interventions influence this interaction. This cohort includes metastatic Triple Negative Breast Cancer (mTNBC) patients, naïve of treatment in the metastatic settings, treated in 1st line with chemotherapy or chemo-immunotherapy This dataset contains whole exome sequencing data from tumor and matching germline samples processed with the Vegan pipeline. It includes SNP and CNV calling.

Request Access

DUO:0000007
version: 2021-02-23

disease specific research

This data use permission indicates that use is allowed provided it is related to the specified disease.

ModifiersMONDO:0045054

DUO:0000019
version: 2021-02-23

publication required

This data use modifier indicates that requestor agrees to make results of studies using the data available to the larger scientific community.

DUO:0000021
version: 2021-02-23

ethics approval required

This data use modifier indicates that the requestor must provide documentation of local IRB/ERB approval.

DUO:0000026
version: 2021-02-23

user specific restriction

This data use modifier indicates that use is limited to use by approved users.

DUO:0000027
version: 2021-02-23

project specific restriction

This data use modifier indicates that use is limited to use within an approved project.

DUO:0000028
version: 2021-02-23

institution specific restriction

This data use modifier indicates that use is limited to use within an approved institution.

Terms of use to access IMMUcan data v2.0

The applicant needs to agree with the Terms of use to access IMMUcan data through EGA.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000001587 Cancer Genomics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000575937 fastq.gz 4.1 GB
EGAF50000575938 fastq.gz 5.5 GB
EGAF50000575939 fastq.gz 4.1 GB
EGAF50000575940 fastq.gz 6.1 GB
EGAF50000575941 fastq.gz 4.1 GB
EGAF50000575942 fastq.gz 3.5 GB
EGAF50000575943 fastq.gz 3.5 GB
EGAF50000575944 fastq.gz 4.4 GB
EGAF50000575945 fastq.gz 4.3 GB
EGAF50000575946 fastq.gz 4.6 GB
EGAF50000575947 fastq.gz 4.4 GB
EGAF50000575948 fastq.gz 4.3 GB
EGAF50000575949 fastq.gz 3.7 GB
EGAF50000575950 fastq.gz 5.2 GB
EGAF50000575951 fastq.gz 6.2 GB
EGAF50000575952 fastq.gz 4.6 GB
EGAF50000575953 fastq.gz 4.9 GB
EGAF50000575954 fastq.gz 4.6 GB
EGAF50000575955 fastq.gz 5.9 GB
EGAF50000575956 fastq.gz 4.5 GB
EGAF50000575957 fastq.gz 4.5 GB
EGAF50000575958 fastq.gz 4.2 GB
EGAF50000575959 fastq.gz 2.9 GB
EGAF50000575960 fastq.gz 6.9 GB
EGAF50000575961 fastq.gz 5.8 GB
EGAF50000575962 fastq.gz 3.0 GB
EGAF50000575963 fastq.gz 3.2 GB
EGAF50000575964 fastq.gz 3.8 GB
EGAF50000575965 fastq.gz 4.5 GB
EGAF50000575966 fastq.gz 3.8 GB
EGAF50000575967 fastq.gz 3.0 GB
EGAF50000575968 fastq.gz 5.4 GB
EGAF50000575969 fastq.gz 4.4 GB
EGAF50000575970 fastq.gz 4.4 GB
EGAF50000575971 fastq.gz 4.9 GB
EGAF50000575972 fastq.gz 6.5 GB
EGAF50000575973 fastq.gz 4.4 GB
EGAF50000575974 fastq.gz 4.3 GB
EGAF50000575975 fastq.gz 4.6 GB
EGAF50000575976 fastq.gz 4.4 GB
EGAF50000575977 fastq.gz 4.3 GB
EGAF50000575978 fastq.gz 5.3 GB
EGAF50000575979 fastq.gz 5.4 GB
EGAF50000575980 fastq.gz 4.8 GB
EGAF50000575981 fastq.gz 7.2 GB
EGAF50000575982 fastq.gz 4.3 GB
EGAF50000575983 fastq.gz 5.6 GB
EGAF50000575984 fastq.gz 4.2 GB
EGAF50000575985 fastq.gz 4.7 GB
EGAF50000575986 fastq.gz 4.6 GB
EGAF50000575987 fastq.gz 7.8 GB
EGAF50000575988 fastq.gz 7.6 GB
EGAF50000575989 fastq.gz 4.6 GB
EGAF50000575990 fastq.gz 6.0 GB
EGAF50000575991 fastq.gz 4.9 GB
EGAF50000575992 fastq.gz 4.4 GB
EGAF50000575993 fastq.gz 7.3 GB
EGAF50000575994 fastq.gz 5.5 GB
EGAF50000575995 fastq.gz 4.3 GB
EGAF50000575996 fastq.gz 4.3 GB
EGAF50000575997 fastq.gz 5.0 GB
EGAF50000575998 fastq.gz 4.2 GB
EGAF50000575999 fastq.gz 4.5 GB
EGAF50000576000 fastq.gz 4.5 GB
EGAF50000576001 fastq.gz 4.8 GB
EGAF50000576002 fastq.gz 3.8 GB
EGAF50000576003 fastq.gz 4.5 GB
EGAF50000576004 fastq.gz 7.4 GB
EGAF50000576005 fastq.gz 3.4 GB
EGAF50000576006 fastq.gz 3.3 GB
EGAF50000576007 fastq.gz 5.0 GB
EGAF50000576008 fastq.gz 3.7 GB
EGAF50000576009 fastq.gz 4.9 GB
EGAF50000576010 fastq.gz 6.8 GB
EGAF50000576011 fastq.gz 7.6 GB
EGAF50000576012 fastq.gz 4.9 GB
EGAF50000576013 fastq.gz 4.0 GB
EGAF50000576014 fastq.gz 4.3 GB
EGAF50000576015 fastq.gz 5.6 GB
EGAF50000576016 fastq.gz 5.4 GB
EGAF50000576017 fastq.gz 3.3 GB
EGAF50000576018 fastq.gz 4.9 GB
EGAF50000576019 fastq.gz 4.2 GB
EGAF50000576020 fastq.gz 4.0 GB
EGAF50000576021 fastq.gz 4.5 GB
EGAF50000576022 fastq.gz 8.5 GB
EGAF50000576023 fastq.gz 4.5 GB
EGAF50000576024 fastq.gz 3.9 GB
EGAF50000576025 fastq.gz 4.4 GB
EGAF50000576026 fastq.gz 7.3 GB
EGAF50000576027 fastq.gz 7.8 GB
EGAF50000576028 fastq.gz 5.3 GB
EGAF50000576029 fastq.gz 6.4 GB
EGAF50000576030 fastq.gz 5.3 GB
EGAF50000576031 fastq.gz 4.1 GB
EGAF50000576032 fastq.gz 3.5 GB
EGAF50000576033 fastq.gz 3.6 GB
EGAF50000576034 fastq.gz 3.9 GB
EGAF50000576035 fastq.gz 7.4 GB
EGAF50000576036 fastq.gz 5.0 GB
EGAF50000576037 fastq.gz 5.9 GB
EGAF50000576038 fastq.gz 3.0 GB
EGAF50000576039 fastq.gz 4.4 GB
EGAF50000576040 fastq.gz 4.3 GB
EGAF50000576041 fastq.gz 2.9 GB
EGAF50000576042 fastq.gz 3.0 GB
EGAF50000576043 fastq.gz 4.6 GB
EGAF50000576044 fastq.gz 4.0 GB
EGAF50000576045 fastq.gz 5.0 GB
EGAF50000576046 fastq.gz 6.6 GB
EGAF50000576047 fastq.gz 4.8 GB
EGAF50000576048 fastq.gz 4.5 GB
EGAF50000576049 fastq.gz 3.0 GB
EGAF50000576050 fastq.gz 4.4 GB
EGAF50000576051 fastq.gz 5.0 GB
EGAF50000576052 fastq.gz 4.3 GB
EGAF50000576053 fastq.gz 2.6 GB
EGAF50000576054 fastq.gz 8.0 GB
EGAF50000576055 fastq.gz 4.8 GB
EGAF50000576056 fastq.gz 2.9 GB
EGAF50000576057 fastq.gz 2.9 GB
EGAF50000576058 fastq.gz 2.9 GB
EGAF50000576059 fastq.gz 4.2 GB
EGAF50000576060 fastq.gz 5.1 GB
EGAF50000576061 fastq.gz 4.9 GB
EGAF50000576062 fastq.gz 4.9 GB
EGAF50000576063 fastq.gz 3.4 GB
EGAF50000576064 fastq.gz 7.3 GB
EGAF50000576065 fastq.gz 7.5 GB
EGAF50000576066 fastq.gz 4.4 GB
EGAF50000576067 fastq.gz 6.3 GB
EGAF50000576068 fastq.gz 6.3 GB
EGAF50000576069 fastq.gz 4.5 GB
EGAF50000576070 fastq.gz 6.0 GB
EGAF50000576071 fastq.gz 3.1 GB
EGAF50000576072 fastq.gz 3.0 GB
EGAF50000576073 fastq.gz 3.0 GB
EGAF50000576074 fastq.gz 3.3 GB
EGAF50000576075 fastq.gz 7.0 GB
EGAF50000576076 fastq.gz 9.7 GB
EGAF50000576077 fastq.gz 9.4 GB
EGAF50000576078 fastq.gz 3.5 GB
EGAF50000576079 fastq.gz 3.0 GB
EGAF50000576080 fastq.gz 8.7 GB
EGAF50000576081 fastq.gz 8.2 GB
EGAF50000576082 fastq.gz 5.5 GB
EGAF50000576083 fastq.gz 3.2 GB
EGAF50000576086 fastq.gz 4.1 GB
EGAF50000576093 fastq.gz 2.7 GB
EGAF50000576121 fastq.gz 3.2 GB
EGAF50000576189 vcf.gz 54.3 kB Report
EGAF50000576190 vcf.gz 11.0 kB
EGAF50000576191 vcf.gz 8.2 kB
EGAF50000576192 vcf.gz 46.5 kB Report
EGAF50000576193 vcf.gz 26.8 kB Report
EGAF50000576194 vcf.gz 10.9 kB
EGAF50000576195 vcf.gz 47.0 kB Report
EGAF50000576196 vcf.gz 8.7 kB
EGAF50000576197 vcf.gz 8.3 kB
EGAF50000576198 vcf.gz 52.9 kB Report
EGAF50000576199 vcf.gz 6.7 kB
EGAF50000576200 vcf.gz 36.5 kB Report
EGAF50000576201 vcf.gz 5.6 kB
EGAF50000576202 vcf.gz 32.6 kB Report
EGAF50000576203 vcf.gz 35.6 kB Report
EGAF50000576204 vcf.gz 9.9 kB
EGAF50000576205 vcf.gz 7.3 kB
EGAF50000576206 vcf.gz 63.6 kB Report
EGAF50000576207 vcf.gz 5.8 kB
EGAF50000576208 vcf.gz 13.1 kB
EGAF50000576209 vcf.gz 73.6 kB Report
EGAF50000576210 vcf.gz 7.1 kB
EGAF50000576211 vcf.gz 34.4 kB Report
EGAF50000576212 vcf.gz 35.1 kB Report
EGAF50000576213 vcf.gz 8.3 kB
EGAF50000576214 vcf.gz 23.5 kB Report
EGAF50000576215 vcf.gz 9.2 kB
EGAF50000576216 vcf.gz 23.1 kB Report
EGAF50000576217 vcf.gz 8.6 kB
EGAF50000576218 vcf.gz 34.0 kB Report
EGAF50000576219 vcf.gz 12.4 kB
EGAF50000576220 vcf.gz 69.6 kB Report
EGAF50000576221 vcf.gz 5.6 kB
EGAF50000576222 vcf.gz 20.4 kB Report
EGAF50000576223 vcf.gz 33.9 kB Report
EGAF50000576224 vcf.gz 9.0 kB
EGAF50000576225 vcf.gz 3.8 kB
EGAF50000576226 vcf.gz 50.1 kB Report
EGAF50000576227 vcf.gz 7.3 kB
EGAF50000576228 vcf.gz 23.2 kB Report
EGAF50000576229 vcf.gz 5.6 kB
EGAF50000576230 vcf.gz 22.5 kB Report
EGAF50000576231 vcf.gz 7.5 kB
EGAF50000576232 vcf.gz 36.1 kB Report
EGAF50000576233 vcf.gz 7.9 kB
EGAF50000576234 vcf.gz 28.4 kB Report
EGAF50000576235 vcf.gz 28.2 kB Report
EGAF50000576236 vcf.gz 6.3 kB
EGAF50000576237 vcf.gz 7.6 kB
EGAF50000576238 vcf.gz 33.3 kB Report
EGAF50000576239 vcf.gz 9.9 kB
EGAF50000576240 vcf.gz 65.8 kB Report
EGAF50000576241 vcf.gz 10.7 kB
EGAF50000576242 vcf.gz 54.7 kB Report
EGAF50000576243 vcf.gz 6.8 kB
EGAF50000576244 vcf.gz 32.8 kB Report
EGAF50000576245 vcf.gz 5.6 kB
EGAF50000576246 vcf.gz 44.3 kB Report
EGAF50000576247 vcf.gz 6.6 kB
EGAF50000576248 vcf.gz 32.0 kB Report
EGAF50000576249 vcf.gz 11.9 kB
EGAF50000576250 vcf.gz 64.9 kB Report
EGAF50000576251 vcf.gz 5.4 kB
EGAF50000576252 vcf.gz 51.6 kB Report
EGAF50000576253 vcf.gz 11.2 kB
EGAF50000576254 vcf.gz 77.0 kB Report
EGAF50000576255 vcf.gz 22.2 kB Report
EGAF50000576256 vcf.gz 5.0 kB
EGAF50000576257 vcf.gz 8.8 kB
EGAF50000576258 vcf.gz 5.5 kB
EGAF50000576259 vcf.gz 18.0 kB Report
EGAF50000576260 vcf.gz 60.0 kB Report
EGAF50000576261 vcf.gz 35.0 kB Report
EGAF50000576262 vcf.gz 5.9 kB
EGAF50000576263 fastq.gz 7.1 GB
EGAF50000576264 fastq.gz 7.2 GB
EGAF50000576265 vcf.gz 4.8 kB
EGAF50000576266 vcf.gz 35.2 kB Report
228 Files (741.1 GB)