Need Help?

scRNA and V(D)J sequencing of WM under ibrutinib

Single-cell RNA sequencing (5′ gene expression) and single-cell V(D)J sequencing (B-cell receptor and T-cell receptor) were performed on bone marrow mononuclear cells from patients with Waldenström macroglobulinemia treated with ibrutinib monotherapy. Sequential bone marrow aspirate samples were collected at baseline and after treatment. A total of 222 BAM files are included in this dataset.

Request Access

DUO:0000018
version: 2021-02-23

not for profit, non commercial use only

This data use modifier indicates that use of the data is limited to not-for-profit organizations and not-for-profit use, non-commercial use.

DUO:0000025
version: 2021-02-23

time limit on use

This data use modifier indicates that use is approved for a specific number of months.

DUO:0000042
version: 2021-02-23

general research use

This data use permission indicates that use is allowed for general research use for any research purpose.

Data access policy for single-cell RNA-seq and V(D)J profiling in Waldenström macroglobulinemia

Access to this dataset is restricted and will be granted only to qualified researchers for biomedical research purposes. The data consist of human single-cell RNA sequencing (5′ gene expression) and single-cell immune repertoire sequencing (B-cell receptor and T-cell receptor) generated from bone marrow mononuclear cells of patients with Waldenström macroglobulinemia undergoing ibrutinib monotherapy. Approved users may use the data solely for non-commercial biomedical research, including studies of cancer biology, immunology, and treatment response. Data access requests must include a clear research proposal and evidence of appropriate ethical approval or exemption, where applicable. Users must not attempt to re-identify study participants, must not share the data with unauthorized parties, and must comply with all relevant data protection regulations. Any secondary use of the data must be consistent with the scope of this policy and subject to approval by the Data Access Committee (DAC).

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000001596 Transcriptome Sequencing

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
EGAF50000581037 bam 1.3 GB
EGAF50000581038 bam 1.5 GB
EGAF50000581039 bam 820.3 MB
EGAF50000581040 bam 1.1 GB
EGAF50000581041 bam 324.6 MB
EGAF50000581042 bam 419.5 MB
EGAF50000581043 bam 1.6 GB
EGAF50000581044 bam 219.5 MB
EGAF50000581045 bam 478.5 MB
EGAF50000581046 bam 778.2 MB
EGAF50000581047 bam 996.1 MB
EGAF50000581048 bam 337.0 MB
EGAF50000581049 bam 1.8 GB
EGAF50000581050 bam 481.6 MB
EGAF50000581051 bam 1.0 GB
EGAF50000581052 bam 1.4 GB
EGAF50000581053 bam 719.5 MB
EGAF50000581054 bam 483.8 MB
EGAF50000581055 bam 873.6 MB
EGAF50000581056 bam 723.7 MB
EGAF50000581057 bam 1.2 GB
EGAF50000581058 bam 1.4 GB
EGAF50000581059 bam 1.4 GB
EGAF50000581060 bam 1.3 GB
EGAF50000581061 bam 1.4 GB
EGAF50000581062 bam 1.9 GB
EGAF50000581063 bam 893.5 MB
EGAF50000581064 bam 843.9 MB
EGAF50000581065 bam 913.7 MB
EGAF50000581066 bam 946.5 MB
EGAF50000581067 bam 942.8 MB
EGAF50000581068 bam 403.9 MB
EGAF50000581069 bam 1.3 GB
EGAF50000581070 bam 599.7 MB
EGAF50000581071 bam 420.1 MB
EGAF50000581072 bam 631.6 MB
EGAF50000581073 bam 1.8 GB
EGAF50000581074 bam 1.6 GB
EGAF50000581075 bam 1.6 GB
EGAF50000581076 bam 1.3 GB
EGAF50000581077 bam 896.2 MB
EGAF50000581078 bam 1.5 GB
EGAF50000581079 bam 666.2 MB
EGAF50000581080 bam 847.8 MB
EGAF50000581081 bam 1.1 GB
EGAF50000581082 bam 825.3 MB
EGAF50000581083 bam 725.9 MB
EGAF50000581084 bam 662.5 MB
EGAF50000581085 bam 1.6 GB
EGAF50000581086 bam 681.9 MB
EGAF50000581087 bam 1.1 GB
EGAF50000581088 bam 1.3 GB
EGAF50000581089 bam 583.7 MB
EGAF50000581090 bam 1.2 GB
EGAF50000581091 bam 931.2 MB
EGAF50000581092 bam 1.1 GB
EGAF50000581093 bam 583.8 MB
EGAF50000581094 bam 439.0 MB
EGAF50000581095 bam 507.1 MB
EGAF50000581096 bam 300.3 MB
EGAF50000581097 bam 1.3 GB
EGAF50000581098 bam 1.6 GB
EGAF50000581099 bam 1.6 GB
EGAF50000581100 bam 1.7 GB
EGAF50000581101 bam 652.6 MB
EGAF50000581102 bam 2.1 GB
EGAF50000581103 bam 722.1 MB
EGAF50000581104 bam 239.2 MB
EGAF50000581105 bam 687.4 MB
EGAF50000581106 bam 1.3 GB
EGAF50000581107 bam 1.3 GB
EGAF50000581108 bam 4.3 GB
EGAF50000581109 bam 942.4 MB
EGAF50000581110 bam 1.3 GB
EGAF50000581111 bam 1.1 GB
EGAF50000581112 bam 1.3 GB
EGAF50000581113 bam 992.4 MB
EGAF50000581114 bam 1.3 GB
EGAF50000581115 bam 2.0 GB
EGAF50000581116 bam 2.0 GB
EGAF50000581117 bam 2.3 GB
EGAF50000581118 bam 2.2 GB
EGAF50000581119 bam 94.2 MB
EGAF50000581120 bam 1.1 GB
EGAF50000581121 bam 1.3 GB
EGAF50000581122 bam 1.5 GB
EGAF50000581123 bam 2.0 GB
EGAF50000581124 bam 1.2 GB
EGAF50000581125 bam 29.7 GB
EGAF50000581126 bam 1.1 GB
EGAF50000581127 bam 1.3 GB
EGAF50000581128 bam 1.1 GB
EGAF50000581129 bam 2.4 GB
EGAF50000581130 bam 2.5 GB
EGAF50000581131 bam 1.8 GB
EGAF50000581132 bam 2.3 GB
EGAF50000581133 bam 1.3 GB
EGAF50000581134 bam 1.8 GB
EGAF50000581135 bam 1.6 GB
EGAF50000581136 bam 1.8 GB
EGAF50000581137 bam 1.5 GB
EGAF50000581138 bam 1.2 GB
EGAF50000581139 bam 2.3 GB
EGAF50000581140 bam 2.1 GB
EGAF50000581141 bam 1.7 GB
EGAF50000581142 bam 1.2 GB
EGAF50000581143 bam 1.1 GB
EGAF50000581144 bam 1.4 GB
EGAF50000581145 bam 1.4 GB
EGAF50000581146 bam 1.4 GB
EGAF50000581147 bam 1.2 GB
EGAF50000581148 bam 1.2 GB
EGAF50000581149 bam 1.3 GB
EGAF50000581150 bam 1.3 GB
EGAF50000581151 bam 8.5 GB
EGAF50000581152 bam 21.8 GB
EGAF50000581153 bam 16.0 GB
EGAF50000581154 bam 8.2 GB
EGAF50000581155 bam 12.9 GB
EGAF50000581156 bam 8.2 GB
EGAF50000581157 bam 8.9 GB
EGAF50000581158 bam 11.3 GB
EGAF50000581159 bam 15.4 GB
EGAF50000581160 bam 14.6 GB
EGAF50000581161 bam 14.7 GB
EGAF50000581162 bam 14.3 GB
EGAF50000581163 bam 11.4 GB
EGAF50000581164 bam 14.5 GB
EGAF50000581165 bam 12.5 GB
EGAF50000581166 bam 12.3 GB
EGAF50000581167 bam 15.0 GB
EGAF50000581168 bam 9.6 GB
EGAF50000581169 bam 12.4 GB
EGAF50000581170 bam 13.6 GB
EGAF50000581171 bam 9.6 GB
EGAF50000581172 bam 10.7 GB
EGAF50000581173 bam 12.1 GB
EGAF50000581174 bam 20.4 GB
EGAF50000581175 bam 16.9 GB
EGAF50000581176 bam 14.0 GB
EGAF50000581177 bam 15.5 GB
EGAF50000581178 bam 12.1 GB
EGAF50000581179 bam 11.8 GB
EGAF50000581180 bam 13.8 GB
EGAF50000581181 bam 9.5 GB
EGAF50000581182 bam 10.7 GB
EGAF50000581183 bam 791.3 MB
EGAF50000581184 bam 2.0 GB
EGAF50000581185 bam 649.5 MB
EGAF50000581186 bam 1.6 GB
EGAF50000581187 bam 827.9 MB
EGAF50000581188 bam 856.7 MB
EGAF50000581189 bam 1.2 GB
EGAF50000581190 bam 1.2 GB
EGAF50000581191 bam 1.4 GB
EGAF50000581192 bam 1.5 GB
EGAF50000581193 bam 1.7 GB
EGAF50000581194 bam 1.5 GB
EGAF50000581195 bam 1.3 GB
EGAF50000581196 bam 1.1 GB
EGAF50000581197 bam 1.4 GB
EGAF50000581198 bam 1.0 GB
EGAF50000581199 bam 1.1 GB
EGAF50000581200 bam 1.8 GB
EGAF50000581201 bam 896.5 MB
EGAF50000581202 bam 705.0 MB
EGAF50000581203 bam 2.1 GB
EGAF50000581204 bam 2.0 GB
EGAF50000581205 bam 1.1 GB
EGAF50000581206 bam 523.5 MB
EGAF50000581207 bam 1.2 GB
EGAF50000581208 bam 1.0 GB
EGAF50000581209 bam 677.5 MB
EGAF50000581210 bam 1.1 GB
EGAF50000581211 bam 1.1 GB
EGAF50000581212 bam 1.0 GB
EGAF50000581213 bam 1.1 GB
EGAF50000581214 bam 1.5 GB
EGAF50000581215 bam 1.5 GB
EGAF50000581216 bam 1.3 GB
EGAF50000581217 bam 6.9 GB
EGAF50000581218 bam 8.7 GB
EGAF50000581219 bam 8.7 GB
EGAF50000581220 bam 8.8 GB
EGAF50000581221 bam 11.1 GB
EGAF50000581222 bam 10.7 GB
EGAF50000581223 bam 11.1 GB
EGAF50000581224 bam 12.2 GB
EGAF50000581225 bam 13.8 GB
EGAF50000581226 bam 14.6 GB
EGAF50000581227 bam 8.0 GB
EGAF50000581228 bam 9.9 GB
EGAF50000581229 bam 12.1 GB
EGAF50000581230 bam 12.8 GB
EGAF50000581231 bam 8.2 GB
EGAF50000581232 bam 18.9 GB
EGAF50000581233 bam 8.2 GB
EGAF50000581234 bam 9.7 GB
EGAF50000581235 bam 9.2 GB
EGAF50000581236 bam 9.3 GB
EGAF50000581237 bam 13.0 GB
EGAF50000581238 bam 16.7 GB
EGAF50000581239 bam 13.5 GB
EGAF50000581240 bam 11.0 GB
EGAF50000581241 bam 9.0 GB
EGAF50000581242 bam 13.1 GB
EGAF50000581243 bam 13.7 GB
EGAF50000581244 bam 16.5 GB
EGAF50000581245 bam 10.3 GB
EGAF50000581246 bam 12.4 GB
EGAF50000581247 bam 13.8 GB
EGAF50000581248 bam 15.1 GB
EGAF50000581249 bam 8.5 GB
EGAF50000581250 bam 10.5 GB
EGAF50000581251 bam 11.6 GB
EGAF50000581252 bam 12.1 GB
EGAF50000581253 bam 12.1 GB
EGAF50000581254 bam 13.1 GB
EGAF50000581255 bam 12.9 GB
EGAF50000581256 bam 13.8 GB
EGAF50000581257 bam 14.3 GB
EGAF50000581258 bam 16.5 GB
222 Files (1.1 TB)