About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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Raw and processed Spatial Transcriptomics data of Choroid Plexus Tumours

This dataset contains raw sequencing and processed data of spatially resolved transcriptomes. The data were generated with 10X Visium probe-based assay of FFPE tissues of 14 CPT tumour resections and 2 non-neoplastic reference samples. Raw data contain two-lane fastq files of the sequencing. Processed data contain alinged and filteres count matrices as well as positional files as generated by 10x SpaceRanger

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DUO:0000006
version: 2021-02-23

health or medical or biomedical research

This data use permission indicates that use is allowed for health/medical/biomedical purposes; does not include the study of population origins or ancestry.

DUO:0000018
version: 2021-02-23

not for profit, non commercial use only

This data use modifier indicates that use of the data is limited to not-for-profit organizations and not-for-profit use, non-commercial use.

Access policy for study ST-EPN heterogeneity

Access to this dataset is controlled and will be considered upon request. Data may be used for non-commercial research purposes only. Redistribution of the data is prohibited.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000001617 RNASeq

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000588235 tsv.gz 156.6 kB
EGAF50000588236 tsv.gz 12.8 kB
EGAF50000588237 mtx.gz 60.3 MB
EGAF50000588238 json 341 Bytes
EGAF50000588239 csv 2.2 MB
EGAF50000588240 csv 181.6 kB
EGAF50000588241 tsv.gz 17.9 kB
EGAF50000588242 tsv.gz 156.6 kB
EGAF50000588243 mtx.gz 40.8 MB
EGAF50000588244 json 318 Bytes
EGAF50000588245 csv 2.2 MB
EGAF50000588246 csv 181.5 kB
EGAF50000588247 tsv.gz 13.3 kB
EGAF50000588248 tsv.gz 156.6 kB
EGAF50000588249 json 342 Bytes
EGAF50000588250 mtx.gz 48.9 MB
EGAF50000588251 csv 2.0 MB
EGAF50000588252 csv 181.9 kB
EGAF50000588253 tsv.gz 24.9 kB
EGAF50000588254 tsv.gz 156.6 kB
EGAF50000588255 mtx.gz 12.8 MB
EGAF50000588256 json 324 Bytes
EGAF50000588257 csv 2.3 MB
EGAF50000588258 csv 182.1 kB
EGAF50000588259 tsv.gz 23.7 kB
EGAF50000588260 tsv.gz 156.6 kB
EGAF50000588261 mtx.gz 69.9 MB
EGAF50000588262 json 324 Bytes
EGAF50000588263 csv 2.0 MB
EGAF50000588264 csv 181.6 kB
EGAF50000588265 tsv.gz 156.6 kB
EGAF50000588266 tsv.gz 11.2 kB
EGAF50000588267 mtx.gz 37.6 MB
EGAF50000588268 json 342 Bytes
EGAF50000588269 csv 2.1 MB
EGAF50000588270 csv 181.5 kB
EGAF50000588271 tsv.gz 156.6 kB
EGAF50000588272 tsv.gz 14.5 kB
EGAF50000588273 mtx.gz 37.0 MB
EGAF50000588274 json 341 Bytes
EGAF50000588275 csv 2.2 MB
EGAF50000588276 csv 182.0 kB
EGAF50000588277 tsv.gz 13.9 kB
EGAF50000588278 tsv.gz 156.6 kB
EGAF50000588279 mtx.gz 26.0 MB
EGAF50000588280 json 323 Bytes
EGAF50000588281 csv 2.2 MB
EGAF50000588282 csv 181.4 kB
EGAF50000588283 tsv.gz 156.6 kB
EGAF50000588284 tsv.gz 16.5 kB
EGAF50000588285 mtx.gz 66.8 MB
EGAF50000588286 json 341 Bytes
EGAF50000588287 csv 2.2 MB
EGAF50000588288 csv 181.7 kB
EGAF50000588289 tsv.gz 21.8 kB
EGAF50000588290 tsv.gz 156.6 kB
EGAF50000588291 mtx.gz 80.6 MB
EGAF50000588292 csv 2.2 MB
EGAF50000588293 json 341 Bytes
EGAF50000588294 csv 181.4 kB
EGAF50000588295 tsv.gz 156.6 kB
EGAF50000588296 tsv.gz 10.3 kB
EGAF50000588297 mtx.gz 39.0 MB
EGAF50000588298 json 342 Bytes
EGAF50000588299 csv 2.1 MB
EGAF50000588300 csv 182.1 kB
EGAF50000588301 tsv.gz 23.9 kB
EGAF50000588302 tsv.gz 156.6 kB
EGAF50000588303 mtx.gz 37.1 MB
EGAF50000588304 json 323 Bytes
EGAF50000588305 csv 2.2 MB
EGAF50000588306 csv 181.9 kB
EGAF50000588307 tsv.gz 13.6 kB
EGAF50000588308 tsv.gz 156.6 kB
EGAF50000588309 mtx.gz 27.4 MB
EGAF50000588310 json 324 Bytes
EGAF50000588311 csv 2.1 MB
EGAF50000588312 csv 181.6 kB
EGAF50000588313 tsv.gz 156.6 kB
EGAF50000588314 tsv.gz 10.9 kB
EGAF50000588315 mtx.gz 42.5 MB
EGAF50000588316 json 342 Bytes
EGAF50000588317 csv 2.0 MB
EGAF50000588318 csv 181.9 kB
EGAF50000588319 tsv.gz 25.1 kB
EGAF50000588320 tsv.gz 156.6 kB
EGAF50000588321 mtx.gz 29.9 MB
EGAF50000588322 json 324 Bytes
EGAF50000588323 csv 2.1 MB
EGAF50000588324 csv 181.8 kB
EGAF50000588325 tsv.gz 156.6 kB
EGAF50000588326 tsv.gz 16.7 kB
EGAF50000588327 mtx.gz 63.4 MB
EGAF50000588328 json 341 Bytes
EGAF50000588329 csv 2.3 MB
EGAF50000588330 csv 182.0 kB
EGAF50000588331 tsv.gz 10.0 kB
EGAF50000588332 tsv.gz 156.6 kB
EGAF50000588333 mtx.gz 19.7 MB
EGAF50000588334 csv 2.2 MB
EGAF50000588335 csv 182.0 kB
EGAF50000588336 fastq.gz 244.8 MB
EGAF50000588337 fastq.gz 261.5 MB
EGAF50000588338 fastq.gz 867.1 MB
EGAF50000588339 fastq.gz 234.1 MB
EGAF50000588340 fastq.gz 223.3 MB
EGAF50000588341 fastq.gz 1.7 GB
EGAF50000588342 fastq.gz 825.0 MB
EGAF50000588343 fastq.gz 183.7 MB
EGAF50000588344 fastq.gz 177.7 MB
EGAF50000588345 fastq.gz 564.6 MB
EGAF50000588346 fastq.gz 1.6 GB
EGAF50000588347 fastq.gz 166.4 MB
EGAF50000588348 fastq.gz 173.8 MB
EGAF50000588349 fastq.gz 567.1 MB
EGAF50000588350 fastq.gz 1.2 GB
EGAF50000588351 fastq.gz 299.8 MB
EGAF50000588352 fastq.gz 364.5 MB
EGAF50000588353 fastq.gz 1.2 GB
EGAF50000588354 fastq.gz 965.9 MB
EGAF50000588355 fastq.gz 276.0 MB
EGAF50000588356 fastq.gz 345.6 MB
EGAF50000588357 fastq.gz 1.4 GB
EGAF50000588358 fastq.gz 961.4 MB
EGAF50000588359 fastq.gz 356.5 MB
EGAF50000588360 fastq.gz 1.4 GB
EGAF50000588361 fastq.gz 320.6 MB
EGAF50000588362 fastq.gz 995.3 MB
EGAF50000588363 fastq.gz 348.5 MB
EGAF50000588364 fastq.gz 1.4 GB
EGAF50000588365 fastq.gz 284.5 MB
EGAF50000588366 fastq.gz 989.8 MB
EGAF50000588367 fastq.gz 1.4 GB
EGAF50000588368 fastq.gz 1.1 GB
EGAF50000588369 fastq.gz 1.1 GB
EGAF50000588370 fastq.gz 2.7 GB
EGAF50000588371 fastq.gz 358.4 MB
EGAF50000588372 fastq.gz 310.8 MB
EGAF50000588373 fastq.gz 2.7 GB
EGAF50000588374 fastq.gz 1.1 GB
EGAF50000588375 fastq.gz 341.3 MB
EGAF50000588376 fastq.gz 301.7 MB
EGAF50000588377 fastq.gz 1.6 GB
EGAF50000588378 fastq.gz 1.1 GB
EGAF50000588379 fastq.gz 259.8 MB
EGAF50000588380 fastq.gz 258.6 MB
EGAF50000588381 fastq.gz 1.6 GB
EGAF50000588382 fastq.gz 980.2 MB
EGAF50000588383 fastq.gz 246.8 MB
EGAF50000588384 fastq.gz 253.0 MB
EGAF50000588385 fastq.gz 958.5 MB
EGAF50000588386 fastq.gz 1.8 GB
EGAF50000588387 fastq.gz 271.1 MB
EGAF50000588388 fastq.gz 301.4 MB
EGAF50000588389 fastq.gz 1.0 GB
EGAF50000588390 fastq.gz 1.7 GB
EGAF50000588391 fastq.gz 269.9 MB
EGAF50000588392 fastq.gz 297.4 MB
EGAF50000588393 fastq.gz 1.5 GB
EGAF50000588394 fastq.gz 1.1 GB
EGAF50000588395 fastq.gz 370.5 MB
EGAF50000588396 fastq.gz 366.3 MB
EGAF50000588397 fastq.gz 1.5 GB
EGAF50000588398 fastq.gz 1.3 GB
EGAF50000588399 fastq.gz 344.1 MB
EGAF50000588400 fastq.gz 344.7 MB
EGAF50000588401 fastq.gz 2.6 GB
EGAF50000588402 fastq.gz 1.2 GB
EGAF50000588403 fastq.gz 243.2 MB
EGAF50000588404 fastq.gz 278.6 MB
EGAF50000588405 fastq.gz 978.2 MB
EGAF50000588406 fastq.gz 2.5 GB
EGAF50000588407 fastq.gz 243.1 MB
EGAF50000588408 fastq.gz 263.6 MB
EGAF50000588409 fastq.gz 2.0 GB
EGAF50000588410 fastq.gz 966.4 MB
EGAF50000588411 fastq.gz 291.2 MB
EGAF50000588412 fastq.gz 285.5 MB
EGAF50000588413 fastq.gz 982.2 MB
EGAF50000588414 fastq.gz 2.0 GB
EGAF50000588415 fastq.gz 270.1 MB
EGAF50000588416 fastq.gz 255.5 MB
EGAF50000588417 fastq.gz 956.2 MB
EGAF50000588418 fastq.gz 2.0 GB
EGAF50000588419 fastq.gz 350.0 MB
EGAF50000588420 fastq.gz 329.8 MB
EGAF50000588421 fastq.gz 1.9 GB
EGAF50000588422 fastq.gz 1.3 GB
EGAF50000588423 fastq.gz 350.3 MB
EGAF50000588424 fastq.gz 332.0 MB
EGAF50000588425 fastq.gz 1.9 GB
EGAF50000588426 fastq.gz 1.3 GB
EGAF50000588427 fastq.gz 302.7 MB
EGAF50000588428 fastq.gz 307.9 MB
EGAF50000588429 fastq.gz 1.9 GB
EGAF50000588430 fastq.gz 1.1 GB
EGAF50000588431 fastq.gz 296.6 MB
EGAF50000588432 fastq.gz 302.1 MB
EGAF50000588433 fastq.gz 1.6 GB
EGAF50000588434 fastq.gz 1.1 GB
EGAF50000588435 fastq.gz 195.3 MB
EGAF50000588436 fastq.gz 200.3 MB
EGAF50000588437 fastq.gz 1.6 GB
EGAF50000588438 fastq.gz 650.2 MB
EGAF50000588439 fastq.gz 193.7 MB
EGAF50000588440 fastq.gz 188.7 MB
EGAF50000588441 fastq.gz 644.6 MB
EGAF50000588442 fastq.gz 1.3 GB
EGAF50000588443 fastq.gz 266.4 MB
EGAF50000588444 fastq.gz 263.4 MB
EGAF50000588445 fastq.gz 1.3 GB
EGAF50000588446 fastq.gz 946.1 MB
EGAF50000588447 fastq.gz 259.7 MB
EGAF50000588448 fastq.gz 263.6 MB
EGAF50000588449 fastq.gz 1.3 GB
EGAF50000588450 fastq.gz 959.0 MB
EGAF50000588451 fastq.gz 377.7 MB
EGAF50000588452 fastq.gz 1.3 GB
EGAF50000588453 fastq.gz 330.6 MB
EGAF50000588454 fastq.gz 1.3 GB
EGAF50000588455 fastq.gz 357.4 MB
EGAF50000588456 fastq.gz 321.8 MB
EGAF50000588457 fastq.gz 2.7 GB
EGAF50000588458 fastq.gz 1.3 GB
EGAF50000588459 fastq.gz 292.5 MB
EGAF50000588460 fastq.gz 300.3 MB
EGAF50000588461 fastq.gz 1.0 GB
EGAF50000588462 fastq.gz 2.6 GB
EGAF50000588463 fastq.gz 276.3 MB
EGAF50000588464 fastq.gz 285.6 MB
EGAF50000588465 fastq.gz 1.4 GB
EGAF50000588466 fastq.gz 1.0 GB
EGAF50000588467 fastq.gz 296.2 MB
EGAF50000588468 fastq.gz 297.6 MB
EGAF50000588469 fastq.gz 1.4 GB
EGAF50000588470 fastq.gz 971.4 MB
EGAF50000588471 fastq.gz 291.7 MB
EGAF50000588472 fastq.gz 285.2 MB
EGAF50000588473 fastq.gz 1.3 GB
EGAF50000588474 fastq.gz 974.9 MB
EGAF50000588475 fastq.gz 1.3 GB
241 Files (118.5 GB)