Raw and processed snRNAseq data of Choroid Plexus Tumors
This dataset contains raw sequencing and processed data of single nuclei transcriptomes. The data were generated with 10x chromium probe-based single-nucleus assay on FFPE tissues of 43 Choroid Plexus Tumour resections and 12 non-neoplastic fetal and adult ChP resections. Raw data contain BAM files of the sequencing. Processed data contain count matrices as generated by 10x CellRanger for raw and filtered running options.
- 24/03/2026
- 57 samples
- DAC: EGAC50000000765
- Technology: Illumina NovaSeq 6000
DUO:0000006 version: 2021-02-23
health or medical or biomedical research
This data use permission indicates that use is allowed for health/medical/biomedical purposes; does not include the study of population origins or ancestry.
DUO:0000018 version: 2021-02-23
not for profit, non commercial use only
This data use modifier indicates that use of the data is limited to not-for-profit organizations and not-for-profit use, non-commercial use.
Access policy for study ST-EPN heterogeneity
Access to this dataset is controlled and will be considered upon request. Data may be used for non-commercial research purposes only. Redistribution of the data is prohibited.
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS50000001617 | RNASeq |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Quality Report |
Located in
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|---|---|---|---|---|
| EGAF50000588023 | bam | 10.3 GB |
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| EGAF50000588024 | bam | 2.0 GB |
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| EGAF50000588025 | bam | 13.6 GB |
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| EGAF50000588026 | bam | 2.9 GB |
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| EGAF50000588027 | bam | 1.2 GB |
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| EGAF50000588028 | bam | 1.4 GB |
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| EGAF50000588029 | bam | 2.3 GB |
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| EGAF50000588030 | bam | 1.7 GB |
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| EGAF50000588031 | bam | 8.5 GB |
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| EGAF50000588032 | bam | 2.9 GB |
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| EGAF50000588033 | bam | 6.0 GB |
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| EGAF50000588034 | bam | 739.7 MB |
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| EGAF50000588035 | bam | 1.7 GB |
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| EGAF50000588036 | bam | 6.0 GB |
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| EGAF50000588037 | bam | 1.7 GB |
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| EGAF50000588038 | bam | 7.9 GB |
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| EGAF50000588039 | bam | 25.8 GB |
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| EGAF50000588040 | bam | 13.6 GB |
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| EGAF50000588041 | bam | 2.7 GB |
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| EGAF50000588042 | bam | 11.0 GB |
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| EGAF50000588043 | bam | 1.6 GB |
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| EGAF50000588044 | bam | 1.9 GB |
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| EGAF50000588045 | bam | 2.8 GB |
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| EGAF50000588046 | bam | 8.1 GB |
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| EGAF50000588047 | bam | 1.9 GB |
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| EGAF50000588048 | bam | 4.6 GB |
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| EGAF50000588049 | bam | 2.9 GB |
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| EGAF50000588050 | bam | 2.3 GB |
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| EGAF50000588051 | bam | 2.0 GB |
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| EGAF50000588052 | bam | 5.4 GB |
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| EGAF50000588053 | bam | 1.4 GB |
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| EGAF50000588054 | bam | 4.8 GB |
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| EGAF50000588055 | bam | 18.6 GB |
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| EGAF50000588056 | bam | 6.8 GB |
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| EGAF50000588057 | bam | 1.9 GB |
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| EGAF50000588058 | bam | 1.0 GB |
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| EGAF50000588059 | bam | 690.8 MB |
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| EGAF50000588060 | bam | 5.2 GB |
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| EGAF50000588061 | bam | 7.7 GB |
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| EGAF50000588062 | bam | 3.4 GB |
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| EGAF50000588063 | bam | 1.3 GB |
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| EGAF50000588064 | bam | 5.0 GB |
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| EGAF50000588065 | bam | 13.1 GB |
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| EGAF50000588066 | bam | 9.4 GB |
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| EGAF50000588067 | bam | 8.4 GB |
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| EGAF50000588068 | bam | 4.6 GB |
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| EGAF50000588069 | bam | 2.7 GB |
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| EGAF50000588070 | bam | 12.7 GB |
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| EGAF50000588071 | bam | 6.6 GB |
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| EGAF50000588072 | bam | 1.2 GB |
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| EGAF50000588073 | bam | 19.5 GB |
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| EGAF50000588074 | bam | 4.4 GB |
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| EGAF50000588075 | bam | 6.6 GB |
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| EGAF50000588076 | bam | 7.3 GB |
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| EGAF50000588077 | bam | 14.9 GB |
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| EGAF50000588078 | tsv.gz | 156.6 kB |
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| EGAF50000588079 | tsv.gz | 48.9 kB |
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| EGAF50000588080 | tsv.gz | 64.3 kB |
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| EGAF50000588081 | tsv.gz | 156.6 kB |
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| EGAF50000588082 | mtx.gz | 62.5 MB |
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| EGAF50000588083 | tsv.gz | 7.0 kB |
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| EGAF50000588084 | tsv.gz | 156.6 kB |
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| EGAF50000588085 | mtx.gz | 61.9 MB |
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| EGAF50000588086 | mtx.gz | 5.3 MB |
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| EGAF50000588087 | tsv.gz | 156.6 kB |
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| EGAF50000588088 | tsv.gz | 13.2 kB |
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| EGAF50000588089 | mtx.gz | 10.2 MB |
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| EGAF50000588090 | tsv.gz | 10.5 kB |
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| EGAF50000588091 | tsv.gz | 156.6 kB |
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| EGAF50000588092 | mtx.gz | 6.5 MB |
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| EGAF50000588093 | tsv.gz | 8.9 kB |
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| EGAF50000588094 | tsv.gz | 156.6 kB |
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| EGAF50000588095 | mtx.gz | 6.2 MB |
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| EGAF50000588096 | tsv.gz | 13.0 kB |
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| EGAF50000588097 | mtx.gz | 11.6 MB |
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| EGAF50000588098 | tsv.gz | 10.2 kB |
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| EGAF50000588099 | mtx.gz | 7.5 MB |
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| EGAF50000588100 | tsv.gz | 77.6 kB |
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| EGAF50000588101 | tsv.gz | 156.6 kB |
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| EGAF50000588102 | tsv.gz | 26.0 kB |
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| EGAF50000588103 | tsv.gz | 156.6 kB |
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| EGAF50000588104 | mtx.gz | 31.4 MB |
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| EGAF50000588105 | tsv.gz | 26.4 kB |
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| EGAF50000588106 | tsv.gz | 156.6 kB |
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| EGAF50000588107 | mtx.gz | 152.7 MB |
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| EGAF50000588108 | mtx.gz | 25.8 MB |
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| EGAF50000588109 | tsv.gz | 21.9 kB |
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| EGAF50000588110 | tsv.gz | 156.6 kB |
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| EGAF50000588111 | mtx.gz | 17.6 MB |
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| EGAF50000588112 | tsv.gz | 156.6 kB |
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| EGAF50000588113 | tsv.gz | 3.9 kB |
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| EGAF50000588114 | mtx.gz | 3.3 MB |
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| EGAF50000588115 | tsv.gz | 4.6 kB |
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| EGAF50000588116 | mtx.gz | 2.3 MB |
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| EGAF50000588117 | tsv.gz | 4.2 kB |
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| EGAF50000588118 | mtx.gz | 2.1 MB |
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| EGAF50000588119 | tsv.gz | 156.6 kB |
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| EGAF50000588120 | tsv.gz | 10.7 kB |
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| EGAF50000588121 | mtx.gz | 7.0 MB |
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| EGAF50000588122 | tsv.gz | 156.6 kB |
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| EGAF50000588123 | tsv.gz | 14.8 kB |
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| EGAF50000588124 | mtx.gz | 11.2 MB |
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| EGAF50000588125 | tsv.gz | 4.4 kB |
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| EGAF50000588126 | tsv.gz | 156.6 kB |
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| EGAF50000588127 | mtx.gz | 2.2 MB |
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| EGAF50000588128 | tsv.gz | 22.2 kB |
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| EGAF50000588129 | mtx.gz | 21.4 MB |
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| EGAF50000588130 | tsv.gz | 28.4 kB |
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| EGAF50000588131 | tsv.gz | 156.6 kB |
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| EGAF50000588132 | mtx.gz | 20.1 MB |
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| EGAF50000588133 | tsv.gz | 15.8 kB |
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| EGAF50000588134 | tsv.gz | 156.6 kB |
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| EGAF50000588135 | mtx.gz | 13.0 MB |
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| EGAF50000588136 | tsv.gz | 156.6 kB |
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| EGAF50000588137 | tsv.gz | 5.1 kB |
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| EGAF50000588138 | mtx.gz | 2.9 MB |
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| EGAF50000588139 | tsv.gz | 156.6 kB |
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| EGAF50000588140 | tsv.gz | 3.6 kB |
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| EGAF50000588141 | mtx.gz | 1.8 MB |
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| EGAF50000588142 | tsv.gz | 156.6 kB |
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| EGAF50000588143 | tsv.gz | 3.6 kB |
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| EGAF50000588144 | mtx.gz | 2.1 MB |
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| EGAF50000588145 | tsv.gz | 12.5 kB |
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| EGAF50000588146 | mtx.gz | 9.6 MB |
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| EGAF50000588147 | tsv.gz | 6.5 kB |
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| EGAF50000588148 | tsv.gz | 156.6 kB |
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| EGAF50000588149 | mtx.gz | 3.6 MB |
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| EGAF50000588150 | tsv.gz | 10.9 kB |
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| EGAF50000588151 | tsv.gz | 156.6 kB |
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| EGAF50000588152 | mtx.gz | 4.2 MB |
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| EGAF50000588153 | tsv.gz | 156.6 kB |
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| EGAF50000588154 | tsv.gz | 7.7 kB |
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| EGAF50000588155 | mtx.gz | 6.4 MB |
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| EGAF50000588156 | tsv.gz | 156.6 kB |
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| EGAF50000588157 | tsv.gz | 7.1 kB |
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| EGAF50000588158 | mtx.gz | 4.9 MB |
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| EGAF50000588159 | tsv.gz | 156.6 kB |
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| EGAF50000588160 | tsv.gz | 47.1 kB |
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| EGAF50000588161 | tsv.gz | 11.3 kB |
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| EGAF50000588162 | tsv.gz | 156.6 kB |
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| EGAF50000588163 | mtx.gz | 49.7 MB |
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| EGAF50000588164 | mtx.gz | 9.9 MB |
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| EGAF50000588165 | tsv.gz | 156.6 kB |
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| EGAF50000588166 | tsv.gz | 16.2 kB |
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| EGAF50000588167 | mtx.gz | 14.3 MB |
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| EGAF50000588168 | tsv.gz | 4.7 kB |
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| EGAF50000588169 | mtx.gz | 2.7 MB |
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| EGAF50000588170 | tsv.gz | 156.6 kB |
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| EGAF50000588171 | tsv.gz | 156.6 kB |
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| EGAF50000588172 | tsv.gz | 17.4 kB |
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| EGAF50000588173 | mtx.gz | 17.6 MB |
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| EGAF50000588174 | tsv.gz | 4.8 kB |
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| EGAF50000588175 | tsv.gz | 156.6 kB |
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| EGAF50000588176 | mtx.gz | 2.6 MB |
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| EGAF50000588177 | tsv.gz | 4.4 kB |
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| EGAF50000588178 | tsv.gz | 156.6 kB |
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| EGAF50000588179 | mtx.gz | 3.1 MB |
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| EGAF50000588180 | tsv.gz | 156.6 kB |
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| EGAF50000588181 | tsv.gz | 7.4 kB |
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| EGAF50000588182 | mtx.gz | 3.4 MB |
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| EGAF50000588183 | tsv.gz | 156.6 kB |
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| EGAF50000588184 | tsv.gz | 10.4 kB |
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| EGAF50000588185 | mtx.gz | 6.7 MB |
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| EGAF50000588186 | tsv.gz | 5.4 kB |
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| EGAF50000588187 | tsv.gz | 156.6 kB |
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| EGAF50000588188 | mtx.gz | 1.5 MB |
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| EGAF50000588189 | tsv.gz | 16.5 kB |
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| EGAF50000588190 | mtx.gz | 13.5 MB |
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| EGAF50000588191 | tsv.gz | 156.6 kB |
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| EGAF50000588192 | tsv.gz | 7.6 kB |
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| EGAF50000588193 | mtx.gz | 3.7 MB |
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| EGAF50000588194 | tsv.gz | 156.6 kB |
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| EGAF50000588195 | tsv.gz | 16.4 kB |
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| EGAF50000588196 | tsv.gz | 8.8 kB |
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| EGAF50000588197 | mtx.gz | 22.5 MB |
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| EGAF50000588198 | tsv.gz | 156.6 kB |
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| EGAF50000588199 | mtx.gz | 8.9 MB |
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| EGAF50000588200 | tsv.gz | 156.6 kB |
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| EGAF50000588201 | tsv.gz | 9.7 kB |
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| EGAF50000588202 | mtx.gz | 8.5 MB |
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| EGAF50000588203 | tsv.gz | 13.9 kB |
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| EGAF50000588204 | mtx.gz | 17.8 MB |
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| EGAF50000588205 | tsv.gz | 19.3 kB |
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| EGAF50000588206 | tsv.gz | 156.6 kB |
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| EGAF50000588207 | tsv.gz | 11.7 kB |
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| EGAF50000588208 | mtx.gz | 17.9 MB |
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| EGAF50000588209 | tsv.gz | 156.6 kB |
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| EGAF50000588210 | mtx.gz | 3.8 MB |
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| EGAF50000588211 | tsv.gz | 14.8 kB |
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| EGAF50000588212 | tsv.gz | 156.6 kB |
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| EGAF50000588213 | mtx.gz | 9.8 MB |
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| EGAF50000588214 | tsv.gz | 156.6 kB |
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| EGAF50000588215 | tsv.gz | 20.9 kB |
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| EGAF50000588216 | tsv.gz | 33.0 kB |
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| EGAF50000588217 | mtx.gz | 24.0 MB |
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| EGAF50000588218 | tsv.gz | 156.6 kB |
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| EGAF50000588219 | mtx.gz | 29.2 MB |
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| EGAF50000588220 | tsv.gz | 17.1 kB |
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| EGAF50000588221 | tsv.gz | 156.6 kB |
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| EGAF50000588222 | mtx.gz | 4.3 MB |
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| EGAF50000588223 | tsv.gz | 156.6 kB |
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| EGAF50000588224 | tsv.gz | 21.7 kB |
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| EGAF50000588225 | mtx.gz | 15.6 MB |
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| EGAF50000588226 | tsv.gz | 22.8 kB |
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| EGAF50000588227 | tsv.gz | 156.6 kB |
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| EGAF50000588228 | tsv.gz | 15.4 kB |
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| EGAF50000588229 | mtx.gz | 19.0 MB |
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| EGAF50000588230 | tsv.gz | 156.6 kB |
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| EGAF50000588231 | mtx.gz | 13.4 MB |
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| EGAF50000588232 | tsv.gz | 156.6 kB |
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| EGAF50000588233 | tsv.gz | 25.2 kB |
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| EGAF50000588234 | mtx.gz | 23.3 MB |
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| EGAF50000588235 | tsv.gz | 156.6 kB |
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| EGAF50000588236 | tsv.gz | 12.8 kB |
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| EGAF50000588237 | mtx.gz | 60.3 MB |
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| EGAF50000588238 | json | 341 Bytes |
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| EGAF50000588239 | csv | 2.2 MB |
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| EGAF50000588240 | csv | 181.6 kB |
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| EGAF50000588241 | tsv.gz | 17.9 kB |
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| EGAF50000588242 | tsv.gz | 156.6 kB |
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| EGAF50000588243 | mtx.gz | 40.8 MB |
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| EGAF50000588244 | json | 318 Bytes |
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| EGAF50000588245 | csv | 2.2 MB |
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| EGAF50000588246 | csv | 181.5 kB |
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| EGAF50000588247 | tsv.gz | 13.3 kB |
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| EGAF50000588248 | tsv.gz | 156.6 kB |
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| EGAF50000588249 | json | 342 Bytes |
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| EGAF50000588250 | mtx.gz | 48.9 MB |
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| EGAF50000588251 | csv | 2.0 MB |
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| EGAF50000588252 | csv | 181.9 kB |
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| EGAF50000588253 | tsv.gz | 24.9 kB |
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| EGAF50000588254 | tsv.gz | 156.6 kB |
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| EGAF50000588255 | mtx.gz | 12.8 MB |
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| EGAF50000588256 | json | 324 Bytes |
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| EGAF50000588257 | csv | 2.3 MB |
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| EGAF50000588258 | csv | 182.1 kB |
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| EGAF50000588259 | tsv.gz | 23.7 kB |
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| EGAF50000588260 | tsv.gz | 156.6 kB |
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| EGAF50000588261 | mtx.gz | 69.9 MB |
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| EGAF50000588262 | json | 324 Bytes |
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| EGAF50000588263 | csv | 2.0 MB |
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| EGAF50000588264 | csv | 181.6 kB |
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| EGAF50000588265 | tsv.gz | 156.6 kB |
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| EGAF50000588266 | tsv.gz | 11.2 kB |
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| EGAF50000588267 | mtx.gz | 37.6 MB |
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| EGAF50000588268 | json | 342 Bytes |
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| EGAF50000588269 | csv | 2.1 MB |
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| EGAF50000588270 | csv | 181.5 kB |
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| EGAF50000588271 | tsv.gz | 156.6 kB |
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| EGAF50000588272 | tsv.gz | 14.5 kB |
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| EGAF50000588273 | mtx.gz | 37.0 MB |
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| EGAF50000588274 | json | 341 Bytes |
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| EGAF50000588275 | csv | 2.2 MB |
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| EGAF50000588276 | csv | 182.0 kB |
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| EGAF50000588277 | tsv.gz | 13.9 kB |
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| EGAF50000588278 | tsv.gz | 156.6 kB |
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| EGAF50000588279 | mtx.gz | 26.0 MB |
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| EGAF50000588280 | json | 323 Bytes |
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| EGAF50000588281 | csv | 2.2 MB |
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| EGAF50000588282 | csv | 181.4 kB |
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| EGAF50000588283 | tsv.gz | 156.6 kB |
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| EGAF50000588284 | tsv.gz | 16.5 kB |
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| EGAF50000588285 | mtx.gz | 66.8 MB |
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| EGAF50000588286 | json | 341 Bytes |
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| EGAF50000588287 | csv | 2.2 MB |
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| EGAF50000588288 | csv | 181.7 kB |
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| EGAF50000588289 | tsv.gz | 21.8 kB |
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| EGAF50000588290 | tsv.gz | 156.6 kB |
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| EGAF50000588291 | mtx.gz | 80.6 MB |
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| EGAF50000588292 | csv | 2.2 MB |
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| EGAF50000588293 | json | 341 Bytes |
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| EGAF50000588294 | csv | 181.4 kB |
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| EGAF50000588295 | tsv.gz | 156.6 kB |
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| EGAF50000588296 | tsv.gz | 10.3 kB |
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| EGAF50000588297 | mtx.gz | 39.0 MB |
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| EGAF50000588298 | json | 342 Bytes |
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| EGAF50000588299 | csv | 2.1 MB |
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| EGAF50000588300 | csv | 182.1 kB |
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| EGAF50000588301 | tsv.gz | 23.9 kB |
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| EGAF50000588302 | tsv.gz | 156.6 kB |
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| EGAF50000588303 | mtx.gz | 37.1 MB |
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| EGAF50000588304 | json | 323 Bytes |
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| EGAF50000588305 | csv | 2.2 MB |
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| EGAF50000588306 | csv | 181.9 kB |
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| EGAF50000588307 | tsv.gz | 13.6 kB |
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| EGAF50000588308 | tsv.gz | 156.6 kB |
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| EGAF50000588309 | mtx.gz | 27.4 MB |
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| EGAF50000588310 | json | 324 Bytes |
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| EGAF50000588311 | csv | 2.1 MB |
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| EGAF50000588312 | csv | 181.6 kB |
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| EGAF50000588313 | tsv.gz | 156.6 kB |
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| EGAF50000588314 | tsv.gz | 10.9 kB |
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| EGAF50000588315 | mtx.gz | 42.5 MB |
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| EGAF50000588316 | json | 342 Bytes |
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| EGAF50000588317 | csv | 2.0 MB |
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| EGAF50000588318 | csv | 181.9 kB |
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| EGAF50000588319 | tsv.gz | 25.1 kB |
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| EGAF50000588320 | tsv.gz | 156.6 kB |
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| EGAF50000588321 | mtx.gz | 29.9 MB |
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| EGAF50000588322 | json | 324 Bytes |
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| EGAF50000588323 | csv | 2.1 MB |
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| EGAF50000588324 | csv | 181.8 kB |
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| EGAF50000588325 | tsv.gz | 156.6 kB |
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| EGAF50000588326 | tsv.gz | 16.7 kB |
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| EGAF50000588327 | mtx.gz | 63.4 MB |
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| EGAF50000588328 | json | 341 Bytes |
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| EGAF50000588329 | csv | 2.3 MB |
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| EGAF50000588330 | csv | 182.0 kB |
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| EGAF50000588331 | tsv.gz | 10.0 kB |
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| EGAF50000588332 | tsv.gz | 156.6 kB |
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| EGAF50000588333 | mtx.gz | 19.7 MB |
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| EGAF50000588334 | csv | 2.2 MB |
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| EGAF50000588335 | csv | 182.0 kB |
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| 313 Files (328.1 GB) | ||||