About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
Need Help?

Bulk RNA-seq of PXA patients

We profiled 36 distinct PXA patients (68 samples including replicates) by bulk RNA-seq. The raw fastq files are provided.

Request Access

DUO:0000042
version: 2021-02-23

general research use

This data use permission indicates that use is allowed for general research use for any research purpose.

Access to data generated by our group is available by emailing application to the data access committee and will be granted to qualified investigators for appropriate use. For further guidelines, see the application form and data access agreement

DATA ACCESS AGREEMENT These terms and conditions govern access to the managed access datasets (details of which are set out in Appendix I) to which the User Institution has requested access. The User Institution agrees to be bound by these terms and conditions. Definitions Authorised Personnel: The individuals at the User Institution to whom the Research Institute of the McGill University Health Centre (RI-MUHC) grants access to the Data. This includes the User, the individuals listed in Appendix II and any other individuals for whom the User Institution subsequently requests access to the Data. Details of the initial Authorised Personnel are set out in Appendix II. Data: The managed access datasets to which the User Institution has requested access. Data Producers: RI-MUHC and the collaborators listed in Appendix I responsible for the development, organisation, and oversight of these Data. External Collaborator: A collaborator of the User, working for an institution other than the User Institution. Project: The project for which the User Institution has requested access to these Data. A description of the Project is set out in Appendix II. Publications: Includes, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. Research Participant: An individual whose data form part of these Data. Research Purposes: Shall mean research that is seeking to advance the understanding of genetics and genomics, including the treatment of disorders, and work on statistical methods that may be applied to such research. User: The principal investigator for the Project. User Institution(s): The Institution that has requested access to the Data. Provider Institution: The Research Institute of the McGill University Health Centre (RI-MUHC) 2155 Guy Street, Suite 500 Montreal, Quebec, CANADA H3H 2L9 1. The User Institution agrees to only use these Data for the purpose of the Project (described in Appendix II) and only for Research Purposes. The User Institution further agrees that it will only use these Data for Research Purposes which are within the limitations (if any) set out in Appendix I. 2. The User Institution agrees to preserve, at all times, the confidentiality of these Data. In particular, it undertakes not to use, or attempt to use these Data to compromise or otherwise infringe the confidentiality of information on Research Participants. Without prejudice to the generality of the foregoing, the User Institution agrees to use at least the measures set out in Appendix I to protect these Data. 3. The User Institution agrees to protect the confidentiality of Research Participants in any research papers or publications that they prepare by taking all reasonable care to limit the possibility of identification. 4. The User Institution agrees not to link or combine these Data to other information or archived data available in a way that could re-identify the Research Participants, even if access to that data has been formally granted to the User Institution or is freely available without restriction. 5. The User Institution agrees only to transfer or disclose these Data, in whole or part, or any material derived from these Data, to the Authorised Personnel. Should the User Institution wish to share these Data with an External Collaborator, the External Collaborator must complete a separate application for access to these Data. 6. The User Institution agrees that the Data Producers, and all other parties involved in the creation, funding or protection of these Data: a) make no warranty or representation, express or implied as to the accuracy, quality or comprehensiveness of these Data; b) exclude to the fullest extent permitted by law all liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards damages and payments made by the Recipient that may arise (whether directly or indirectly) in any way whatsoever from the Recipient’s use of these Data or from the unavailability of, or break in access to, these Data for whatever reason and; c) bear no responsibility for the further analysis or interpretation of these Data. 7. The User Institution agrees to follow the Fort Lauderdale Guidelines (http://www.wellcome.ac.uk/stellent/groups/corporatesite/@policy_communications/documents/web_document/wtd003207.pdf ) and the Toronto Statement (http://www.nature.com/nature/journal/v461/n7261/full/461168a.html). This includes but is not limited to recognising the contribution of the Data Producers and including a proper acknowledgement in all reports or publications resulting from the use of these Data. 8. The User Institution agrees to follow the Publication Policy in Appendix III. This includes respecting the moratorium period for the Data Producers to publish the first peer-reviewed report describing and analysing these Data. 9. The User Institution agrees not to make intellectual property claims on these Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of these Data, or conclusion drawn directly from these Data. 10. The User Institution can elect to perform further research that would add intellectual and resource capital to these data and decide to obtain intellectual property rights on these downstream discoveries. In this case, the User Institution agrees to implement licensing policies that will not obstruct further research and to follow the U.S. National Institutes of Health Best Practices for the Licensing of Genomic Inventions (2005) (https://www.icgc.org/files/daco/NIH_BestPracticesLicensingGenomicInventions_2005_en.pdf ) in conformity with the Organisation for Economic Co-operation and Development Guidelines for the Licensing of the Genetic Inventions (2006) (http://www.oecd.org/science/biotech/36198812.pdf ). 11. The User Institution agrees to destroy/discard the Data held, once it is no longer used for the Project, unless obliged to retain the data for archival purposes in conformity with audit or legal requirements. 12. The User Institution will notify the RI-MUHC within 30 days of any changes or departures of Authorised Personnel. 13. The User Institution will notify the RI-MUHC prior to any significant changes to the protocol for the Project. 14. The User Institution will notify the RI-MUHC as soon as it becomes aware of a breach of the terms or conditions of this agreement. 15. the RI-MUHC may terminate this agreement by written notice to the User Institution. If this agreement terminates for any reason, the User Institution will be required to destroy any Data held, including copies and backup copies. This clause does not prevent the User Institution from retaining these data for archival purpose in conformity with audit or legal requirements. 16. The User Institution accepts that it may be necessary for the Data Producers to alter the terms of this agreement from time to time. As an example, this may include specific provisions relating to the Data required by Data Producers other than the RI-MUHC. In the event that changes are required, the Data Producers or their appointed agent will contact the User Institution to inform it of the changes and the User Institution may elect to accept the changes or terminate the agreement. 17. If requested, the User Institution will allow data security and management documentation to be inspected to verify that it is complying with the terms of this agreement. 18. The User Institution agrees to distribute a copy of these terms to the Authorised Personnel. The User Institution will procure that the Authorised Personnel comply with the terms of this agreement.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000001652 Metagenomics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000640165 fastq.gz 1.6 GB
EGAF50000640166 fastq.gz 1.6 GB
EGAF50000640167 fastq.gz 1.7 GB
EGAF50000640168 fastq.gz 1.8 GB
EGAF50000640169 fastq.gz 1.9 GB
EGAF50000640170 fastq.gz 1.9 GB
EGAF50000640171 fastq.gz 2.0 GB
EGAF50000640172 fastq.gz 2.0 GB
EGAF50000640173 fastq.gz 1.2 GB
EGAF50000640174 fastq.gz 1.2 GB
EGAF50000640175 fastq.gz 1.3 GB
EGAF50000640176 fastq.gz 1.3 GB
EGAF50000640177 fastq.gz 1.7 GB
EGAF50000640178 fastq.gz 1.7 GB
EGAF50000640179 fastq.gz 1.2 GB
EGAF50000640180 fastq.gz 1.2 GB
EGAF50000640181 fastq.gz 5.3 GB
EGAF50000640182 fastq.gz 5.3 GB
EGAF50000640183 fastq.gz 1.6 GB
EGAF50000640184 fastq.gz 1.6 GB
EGAF50000640185 fastq.gz 1.7 GB
EGAF50000640186 fastq.gz 1.7 GB
EGAF50000640187 fastq.gz 1.9 GB
EGAF50000640188 fastq.gz 2.0 GB
EGAF50000640189 fastq.gz 1.5 GB
EGAF50000640190 fastq.gz 1.5 GB
EGAF50000640191 fastq.gz 1.3 GB
EGAF50000640192 fastq.gz 1.4 GB
EGAF50000640193 fastq.gz 1.7 GB
EGAF50000640194 fastq.gz 1.7 GB
EGAF50000640195 fastq.gz 1.8 GB
EGAF50000640196 fastq.gz 1.8 GB
EGAF50000640197 fastq.gz 1.6 GB
EGAF50000640198 fastq.gz 1.6 GB
EGAF50000640199 fastq.gz 1.7 GB
EGAF50000640200 fastq.gz 1.7 GB
EGAF50000640201 fastq.gz 1.2 GB
EGAF50000640202 fastq.gz 1.2 GB
EGAF50000640203 fastq.gz 1.5 GB
EGAF50000640204 fastq.gz 1.6 GB
EGAF50000640205 fastq.gz 1.7 GB
EGAF50000640206 fastq.gz 1.7 GB
EGAF50000640207 fastq.gz 1.4 GB
EGAF50000640208 fastq.gz 1.4 GB
EGAF50000640209 fastq.gz 1.3 GB
EGAF50000640210 fastq.gz 1.3 GB
EGAF50000640211 fastq.gz 1.3 GB
EGAF50000640212 fastq.gz 1.3 GB
EGAF50000640213 fastq.gz 1.9 GB
EGAF50000640214 fastq.gz 1.9 GB
EGAF50000640215 fastq.gz 1.6 GB
EGAF50000640216 fastq.gz 1.6 GB
EGAF50000640217 fastq.gz 1.4 GB
EGAF50000640218 fastq.gz 1.4 GB
EGAF50000640219 fastq.gz 1.1 GB
EGAF50000640220 fastq.gz 1.1 GB
EGAF50000640221 fastq.gz 1.4 GB
EGAF50000640222 fastq.gz 1.4 GB
EGAF50000640223 fastq.gz 1.2 GB
EGAF50000640224 fastq.gz 1.2 GB
EGAF50000640225 fastq.gz 1.8 GB
EGAF50000640226 fastq.gz 1.8 GB
EGAF50000640227 fastq.gz 1.8 GB
EGAF50000640228 fastq.gz 1.8 GB
EGAF50000640229 fastq.gz 1.6 GB
EGAF50000640230 fastq.gz 1.6 GB
EGAF50000640231 fastq.gz 2.0 GB
EGAF50000640232 fastq.gz 2.0 GB
EGAF50000640233 fastq.gz 2.2 GB
EGAF50000640234 fastq.gz 2.2 GB
EGAF50000640235 fastq.gz 1.6 GB
EGAF50000640236 fastq.gz 1.6 GB
EGAF50000640237 fastq.gz 953.3 MB
EGAF50000640238 fastq.gz 969.6 MB
EGAF50000640239 fastq.gz 730.2 MB
EGAF50000640240 fastq.gz 758.7 MB
EGAF50000640241 fastq.gz 1.7 GB
EGAF50000640242 fastq.gz 1.7 GB
EGAF50000640243 fastq.gz 1.1 GB
EGAF50000640244 fastq.gz 1.1 GB
EGAF50000640245 fastq.gz 1.3 GB
EGAF50000640246 fastq.gz 1.4 GB
EGAF50000640247 fastq.gz 1.6 GB
EGAF50000640248 fastq.gz 1.7 GB
EGAF50000640249 fastq.gz 1.5 GB
EGAF50000640250 fastq.gz 1.5 GB
EGAF50000640251 fastq.gz 1.5 GB
EGAF50000640252 fastq.gz 1.5 GB
EGAF50000640253 fastq.gz 1.4 GB
EGAF50000640254 fastq.gz 1.4 GB
EGAF50000640255 fastq.gz 1.7 GB
EGAF50000640256 fastq.gz 1.7 GB
EGAF50000640257 fastq.gz 1.5 GB
EGAF50000640258 fastq.gz 1.5 GB
EGAF50000640259 fastq.gz 1.8 GB
EGAF50000640260 fastq.gz 1.9 GB
EGAF50000640261 fastq.gz 1.4 GB
EGAF50000640262 fastq.gz 1.4 GB
EGAF50000640263 fastq.gz 1.2 GB
EGAF50000640264 fastq.gz 1.2 GB
EGAF50000640265 fastq.gz 1.1 GB
EGAF50000640266 fastq.gz 1.2 GB
EGAF50000640267 fastq.gz 830.2 MB
EGAF50000640268 fastq.gz 843.5 MB
EGAF50000640269 fastq.gz 2.2 GB
EGAF50000640270 fastq.gz 2.2 GB
EGAF50000640271 fastq.gz 11.8 GB
EGAF50000640272 fastq.gz 11.7 GB
EGAF50000640273 fastq.gz 9.8 GB
EGAF50000640274 fastq.gz 10.3 GB
EGAF50000640275 fastq.gz 1.4 GB
EGAF50000640276 fastq.gz 1.5 GB
EGAF50000640277 fastq.gz 2.7 GB
EGAF50000640278 fastq.gz 2.9 GB
EGAF50000640279 fastq.gz 2.2 GB
EGAF50000640280 fastq.gz 2.2 GB
EGAF50000640281 fastq.gz 2.7 GB
EGAF50000640282 fastq.gz 2.8 GB
EGAF50000640283 fastq.gz 9.2 GB
EGAF50000640284 fastq.gz 9.2 GB
EGAF50000640285 fastq.gz 1.7 GB
EGAF50000640286 fastq.gz 1.8 GB
EGAF50000640287 fastq.gz 469.1 MB
EGAF50000640288 fastq.gz 496.2 MB
EGAF50000640289 fastq.gz 1.8 GB
EGAF50000640290 fastq.gz 1.9 GB
EGAF50000640291 fastq.gz 2.0 GB
EGAF50000640292 fastq.gz 2.1 GB
EGAF50000640293 fastq.gz 847.7 MB
EGAF50000640294 fastq.gz 904.8 MB
EGAF50000640295 fastq.gz 704.3 MB
EGAF50000640296 fastq.gz 807.9 MB
EGAF50000640297 fastq.gz 1.6 GB
EGAF50000640298 fastq.gz 1.7 GB
EGAF50000640299 fastq.gz 1.3 GB
EGAF50000640300 fastq.gz 1.3 GB
136 Files (271.5 GB)