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BAM files of Dorado base-called Oxford Nanopore whole-genome sequencing data from sporadic PD cases and non-PD controls

This dataset contains whole genome sequencing data from 16 colon tissue samples, including 5 Parkinson’s disease (PD) cases and 11 non-PD controls. Sequencing was performed on the Oxford Nanopore PromethION platform using R10.4.1 flow cells. Raw pod5 files were processed with the public NanoWGS pipeline (https://github.com/AlexanRNA/nanowgs), which includes base calling using ONT Dorado v0.3.2 with modified bases detected using the --modified-bases 5mCG_5hmCG option. The processed data are provided as one BAM file per sample.

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Data policy of Data Access Committee of UZ Leuven

The procedure described below always applies to re-use transfer of genomic or genetic data that are in an external database. This external database can be the European Genome-phenome Archive (EGA). When a researcher receives requests for reuse of data, or when the database requires an intervention of a data access committee, the DAC will assess these requests for reuse and transfer of genomic or genetic data by third parties. Patient consent to research participation (ICF) and compatibility with new data processing should be checked. An application should be submitted at dac@uzleuven.be. So applications for re-use of genomic/genomic data go through the DAC. In the first place, DAC performs a front desk function here. An application form should be completed by the applicant. To begin with, the DAC employee then checks the ICF and its compatibility with further use. The DAC employee also ensures that a check is made with the competent services to ensure that there are no legal impediments. If i) there are possible commercial interests (commercial use of the data by the recipient or the requesting party is a commercial party), ii) the researcher does not agree, or iii) there is some ambiguity about potential risks of the data transfer (e.g. violation (GDPR) legislation, identity of recipient party, use of the data), the question is referred to the DAC advisory board.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000001689 Whole Genome Sequencing

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
EGAF50000695027 bam 242.0 GB
EGAF50000695028 bam 251.1 GB
EGAF50000695029 bam 250.7 GB
EGAF50000695030 bam 292.9 GB
EGAF50000695031 bam 274.1 GB
EGAF50000695032 bam 238.0 GB
EGAF50000695033 bam 253.0 GB
EGAF50000695034 bam 251.9 GB
EGAF50000695035 bam 206.2 GB
EGAF50000695036 bam 289.2 GB
EGAF50000695037 bam 233.6 GB
EGAF50000695038 bam 212.4 GB
EGAF50000695039 bam 213.8 GB
EGAF50000695040 bam 272.1 GB
EGAF50000695041 bam 183.0 GB
EGAF50000695042 bam 290.1 GB
16 Files (4.0 TB)