About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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Raw data of Visium Spatial Transcriptomics

Raw fastq files of 24 samples underlying the spatial transcriptomics analysis of "Human microglial transitions at the Aβ–Tau inflection point associate with divergent pathways to dementia and resilience" using the 10X Visium Spatial Transcriptomics platform

Request Access

This policy applies to the access to and transfer of VIB research datasets that contain non-anonymous Personal Data which are subject to the provisions of the General Data Protection Regulation (EU) 2016/679.

Applicability This policy applies to the access to and transfer of VIB research datasets that contain non-anonymous Personal Data which are subject to the provisions of the General Data Protection Regulation (EU) 2016/679. Access/transfer conditions - The access/transfer is subject to approval by the VIB Data Access Committee. - The proposed research purpose should not be incompatible with the primary research purpose for which the data were originally generated. - The Recipient shall have the necessary competence to handle such datasets. - The Recipient shall have in place adequate safeguards for the protection of Personal Data. - Access is subject to a Data Transfer/Access Agreement which will be managed by VIB Innovation & Business. - The Data Transfer/Access will be limited to the Data that are necessary for the proposed research. Access/transfer procedure - Requests to access or obtain non-anonymous datasets should be submitted to dac@vib.be with a copy to the responsible scientist that has uploaded the dataset onto the repository. - The Requestor must fill in an online request form that will gather amongst other the following information: o Name, affiliation (legal entity) and contact information of the requesting recipient party. o Reference to the specific dataset(s) for which access or transfer is requested. o Description of the research purpose for which the data will be used. - The VIB Data Access Committee will take a decision to approve access/transfer within 14 days upon receipt of the request, involving the responsible scientist. - Data access will be given / Data will be transferred subject to and after completion of a Data Transfer/Access Agreement.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000001692 Transcriptome Sequencing

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000697501 fastq.gz 9.4 GB
EGAF50000697502 fastq.gz 9.1 GB
EGAF50000697503 fastq.gz 24.5 GB
EGAF50000697504 fastq.gz 24.1 GB
EGAF50000697505 fastq.gz 9.5 GB
EGAF50000697514 fastq.gz 21.1 GB
EGAF50000697515 fastq.gz 23.1 GB
EGAF50000697516 fastq.gz 25.8 GB
EGAF50000697533 fastq.gz 19.0 GB
EGAF50000697543 fastq.gz 9.6 GB
EGAF50000697544 fastq.gz 27.3 GB
EGAF50000697545 fastq.gz 29.3 GB
EGAF50000697548 fastq.gz 34.9 GB
EGAF50000697550 fastq.gz 18.7 GB
EGAF50000697551 fastq.gz 7.5 GB
EGAF50000697553 fastq.gz 10.4 GB
EGAF50000697554 fastq.gz 26.6 GB
EGAF50000697555 fastq.gz 9.7 GB
EGAF50000697558 fastq.gz 29.3 GB
EGAF50000697559 fastq.gz 9.9 GB
EGAF50000697561 fastq.gz 25.5 GB
EGAF50000697562 fastq.gz 9.0 GB
EGAF50000697566 fastq.gz 24.4 GB
EGAF50000697567 fastq.gz 9.1 GB
EGAF50000697568 fastq.gz 23.5 GB
EGAF50000697572 fastq.gz 28.2 GB
EGAF50000697574 fastq.gz 7.5 GB
EGAF50000697576 fastq.gz 8.2 GB
EGAF50000697583 fastq.gz 25.9 GB
EGAF50000697585 fastq.gz 38.3 GB
EGAF50000697586 fastq.gz 24.6 GB
EGAF50000697587 fastq.gz 7.7 GB
EGAF50000697588 fastq.gz 20.5 GB
EGAF50000697589 fastq.gz 10.0 GB
EGAF50000697590 fastq.gz 10.6 GB
EGAF50000697591 fastq.gz 10.5 GB
EGAF50000697594 fastq.gz 27.1 GB
EGAF50000697595 fastq.gz 28.8 GB
EGAF50000697596 fastq.gz 8.0 GB
EGAF50000697701 fastq.gz 11.8 GB
EGAF50000697702 fastq.gz 30.3 GB
EGAF50000697703 fastq.gz 9.2 GB
EGAF50000697704 fastq.gz 20.7 GB
EGAF50000697705 fastq.gz 10.0 GB
EGAF50000697706 fastq.gz 10.1 GB
EGAF50000697707 fastq.gz 25.6 GB
EGAF50000697708 fastq.gz 26.6 GB
EGAF50000697709 fastq.gz 28.9 GB
EGAF50000697710 fastq.gz 31.6 GB
EGAF50000697711 fastq.gz 27.1 GB
EGAF50000697712 fastq.gz 23.5 GB
EGAF50000697713 fastq.gz 11.1 GB
EGAF50000697714 fastq.gz 26.9 GB
EGAF50000697715 fastq.gz 22.8 GB
EGAF50000697716 fastq.gz 9.2 GB
EGAF50000697717 fastq.gz 18.0 GB
EGAF50000697718 fastq.gz 9.5 GB
EGAF50000697719 fastq.gz 23.6 GB
EGAF50000697720 fastq.gz 26.7 GB
EGAF50000697721 fastq.gz 22.3 GB
EGAF50000697722 fastq.gz 24.2 GB
EGAF50000697723 fastq.gz 10.0 GB
EGAF50000697724 fastq.gz 17.8 GB
EGAF50000697725 fastq.gz 20.9 GB
EGAF50000697726 fastq.gz 9.2 GB
EGAF50000697727 fastq.gz 25.6 GB
EGAF50000697728 fastq.gz 11.1 GB
EGAF50000697729 fastq.gz 10.0 GB
EGAF50000697730 fastq.gz 30.9 GB
EGAF50000697731 fastq.gz 33.5 GB
EGAF50000697732 fastq.gz 7.6 GB
EGAF50000697733 fastq.gz 19.2 GB
EGAF50000697734 fastq.gz 7.5 GB
EGAF50000697735 fastq.gz 18.7 GB
EGAF50000697736 fastq.gz 9.2 GB
EGAF50000697737 fastq.gz 23.1 GB
EGAF50000697738 fastq.gz 21.7 GB
EGAF50000697739 fastq.gz 23.7 GB
EGAF50000697740 fastq.gz 10.0 GB
EGAF50000697741 fastq.gz 25.3 GB
EGAF50000697742 fastq.gz 25.4 GB
EGAF50000697743 fastq.gz 7.4 GB
EGAF50000697744 fastq.gz 18.1 GB
EGAF50000697745 fastq.gz 9.7 GB
EGAF50000697746 fastq.gz 25.6 GB
EGAF50000697755 fastq.gz 11.1 GB
EGAF50000697945 fastq.gz 26.0 GB
EGAF50000697947 fastq.gz 10.9 GB
88 Files (1.6 TB)