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RNA sequencing dataset of mesothelioma MIST3 study

This dataset includes BAM files from RNA-seq of 36 tumor samples, including 15 collected at diagnosis, 16 prior to treatment, and 3 following treatment.

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Data Access Policy for Mesothelioma Research Programme

Policy Title Data Access Policy for Mesothelioma Research Programme Policy Description This policy governs controlled access to the data generated by Mesothelioma Research Programme. The dataset contains human genomic and/or phenotypic information that could potentially lead to re‑identification if misused. Therefore, access is carefully regulated to ensure participant privacy, comply with ethical approvals, and uphold applicable laws and institutional guidelines. The data are available for legitimate scientific research purposes only. Applicants must demonstrate that their intended use aligns with the aims of the original study and does not contravene any ethical, legal, or institutional restrictions. All applicants are required to provide proof of institutional affiliation, evidence of research ethics approval, and a scientifically sound research proposal. Access Restrictions and Permitted Uses Access to the controlled‑access data is subject to the following conditions: 1. Data may only be used for research related to human health, disease, or biomedical investigation. 2. Data must not be used to attempt identification or re‑identification of any participant. 3. Data may not be used for commercial product development unless explicitly permitted by the original consent and approved by the DAC. 4. Data must not be shared, transferred, or redistributed to any third party. Each researcher who needs access must submit an independent request through EGA. 5. Data must not be used outside the scope of the approved research project. Additional uses require new approval from the DAC. 6. Data users must comply with all applicable laws and regulations related to human genomic data protection (e.g., GDPR or equivalent). Data Access Application Requirements Applicants must provide: ⦁A detailed research proposal including objectives, methodology, and expected outcomes. ⦁Proof of Research Ethics Committee (REC/IRB) approval covering the proposed use of the data. ⦁A completed and signed Data Use Agreement (DUA), confirming adherence to all terms of access and data protection requirements. ⦁Confirmation of secure data storage and handling procedures within the applicant’s institution. Oversight and Review All data access requests are reviewed by the Data Access Committee (DAC) for this project. The DAC is responsible for evaluating applications to ensure that: ⦁The proposed research is scientifically valid. ⦁The research aligns with participant consent and the ethical approval of the original study. ⦁Adequate safeguards are in place to protect participant confidentiality. The DAC for this dataset consists of the mesothelioma research group led by Professor Dean Fennell (or replace with your actual DAC information). The DAC reserves the right to request additional information, impose additional restrictions, or reject any application that does not meet the required standards. Data Use Agreement (DUA) Requirements Approved applicants must agree to the following obligations: ⦁Maintain data in a secure computing environment with controlled access. ⦁Refrain from attempting to identify individuals or linking data with external datasets that may lead to identification. ⦁Use the data only for the approved project and for the approved duration. ⦁Destroy or securely delete all downloaded data upon completion of the project or expiration of access rights. ⦁Acknowledge the original study in publications as required by the DAC. ⦁Notify the DAC of any breaches, suspected breaches, or compliance concerns immediately. Ethical and Legal Compliance All data in this dataset were collected under informed consent and approved by the appropriate Research Ethics Committee. Access and use of the data must strictly adhere to all obligations derived from: ⦁The original participant consent ⦁Institutional and national ethics requirements ⦁Data protection legislation ⦁Governance policies of the European Genome‑phenome Archive (EGA) Failure to comply with policy requirements may result in suspension of access, institutional notification, or further action as required.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000001704 Cancer Genomics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
EGAF50000702406 bam 3.6 GB
EGAF50000702409 bam 3.7 GB
EGAF50000702410 bam 3.4 GB
EGAF50000702413 bam 3.6 GB
EGAF50000702416 bam 3.9 GB
EGAF50000702419 bam 3.5 GB
EGAF50000702420 bam 3.5 GB
EGAF50000702421 bam 4.4 GB
EGAF50000702424 bam 3.5 GB
EGAF50000702427 bam 3.6 GB
EGAF50000702428 bam 4.1 GB
EGAF50000702430 bam 2.7 GB
EGAF50000702431 bam 4.3 GB
EGAF50000702433 bam 3.8 GB
EGAF50000702434 bam 3.3 GB
EGAF50000702435 bam 5.1 GB
EGAF50000702438 bam 3.8 GB
EGAF50000702439 bam 3.3 GB
EGAF50000702441 bam 5.8 GB
EGAF50000702443 bam 3.1 GB
EGAF50000702445 bam 1.9 GB
EGAF50000702446 bam 3.7 GB
EGAF50000702449 bam 3.7 GB
EGAF50000702450 bam 4.8 GB
EGAF50000702452 bam 3.7 GB
EGAF50000702453 bam 3.4 GB
EGAF50000702456 bam 3.4 GB
EGAF50000702457 bam 3.3 GB
EGAF50000702460 bam 3.7 GB
EGAF50000702461 bam 10.4 GB
EGAF50000702464 bam 3.3 GB
EGAF50000702466 bam 4.3 GB
EGAF50000702469 bam 4.4 GB
EGAF50000702472 bam 3.5 GB
EGAF50000702473 bam 2.7 GB
EGAF50000702476 bam 2.8 GB
36 Files (138.8 GB)