About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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RNAseq of baseline tumor tissue obtained during TUR to identify biomarkers for ICB response in MIBC

RNAseq of baseline tumor tissue obtained during TUR to identify biomarkers for ICB response in MIBC. Constitutes the entire NABUCCO phase 1B clinical trial cohort. The NABUCCO 1 trial contains 18 single-end RNA sequenced samples and 6 paired end RNA sequenced samples. The NABUCCO 2 trial contains 25 paired end RNA sequenced samples. The file type for all of the samples is FASTQ. For single end RNA sequencing, Illumina HiSeq 2500 was used as the sequencing platform. For paired end RNA sequencing, the Illumina NovaSeq 6000 was used as the sequencing platform.

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Netherlands Cancer Institute - Antoni van Leeuwenhoek (NKI-AVL) general policy

Data is available under reasonable request. All data requests will be reviewed by the NKI IRB and must be supported by the Principal Investigator of the study. The researcher will need to sign a data access agreement with the NKI after approval.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000001781 RNASeq

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000808001 fastq.gz 335.4 MB
EGAF50000808002 fastq.gz 329.6 MB
EGAF50000808003 fastq.gz 1.8 GB
EGAF50000808004 fastq.gz 1.5 GB
EGAF50000808005 fastq.gz 1.8 GB
EGAF50000808006 fastq.gz 1.6 GB
EGAF50000808007 fastq.gz 1.5 GB
EGAF50000808008 fastq.gz 1.6 GB
EGAF50000808009 fastq.gz 1.8 GB
EGAF50000808010 fastq.gz 1.7 GB
EGAF50000808011 fastq.gz 1.3 GB
EGAF50000808012 fastq.gz 1.1 GB
EGAF50000808013 fastq.gz 533.3 MB
EGAF50000808014 fastq.gz 541.3 MB
EGAF50000808015 fastq.gz 754.2 MB
EGAF50000808016 fastq.gz 777.9 MB
EGAF50000808017 fastq.gz 2.2 GB
EGAF50000808018 fastq.gz 2.3 GB
EGAF50000808019 fastq.gz 1.4 GB
EGAF50000808020 fastq.gz 1.7 GB
EGAF50000808021 fastq.gz 1.9 GB
EGAF50000808022 fastq.gz 525.4 MB
EGAF50000808023 fastq.gz 2.0 GB
EGAF50000808024 fastq.gz 535.1 MB
EGAF50000808025 fastq.gz 933.1 MB
EGAF50000808026 fastq.gz 1.1 GB
EGAF50000808027 fastq.gz 2.3 GB
EGAF50000808028 fastq.gz 821.8 MB
EGAF50000808029 fastq.gz 854.6 MB
EGAF50000808030 fastq.gz 1.2 GB
EGAF50000808031 fastq.gz 1.2 GB
EGAF50000808032 fastq.gz 1.9 GB
EGAF50000808033 fastq.gz 1.6 GB
EGAF50000808034 fastq.gz 449.9 MB
EGAF50000808035 fastq.gz 459.2 MB
EGAF50000808036 fastq.gz 1.6 GB
EGAF50000808037 fastq.gz 983.1 MB
EGAF50000808038 fastq.gz 999.4 MB
EGAF50000808039 fastq.gz 1.4 GB
EGAF50000808040 fastq.gz 2.3 GB
EGAF50000808041 fastq.gz 1.2 GB
EGAF50000808042 fastq.gz 2.4 GB
EGAF50000808043 fastq.gz 1.2 GB
EGAF50000808044 fastq.gz 1.1 GB
EGAF50000808045 fastq.gz 1.1 GB
EGAF50000808046 fastq.gz 2.4 GB
EGAF50000808047 fastq.gz 2.5 GB
EGAF50000808048 fastq.gz 1.3 GB
EGAF50000808049 fastq.gz 1.3 GB
EGAF50000808050 fastq.gz 1.3 GB
EGAF50000808051 fastq.gz 767.6 MB
EGAF50000808052 fastq.gz 771.6 MB
EGAF50000808053 fastq.gz 529.3 MB
EGAF50000808054 fastq.gz 535.1 MB
EGAF50000808055 fastq.gz 1.9 GB
EGAF50000808056 fastq.gz 2.0 GB
EGAF50000808057 fastq.gz 2.4 GB
EGAF50000808058 fastq.gz 2.4 GB
EGAF50000808059 fastq.gz 913.6 MB
EGAF50000808060 fastq.gz 419.8 MB
EGAF50000808061 fastq.gz 421.8 MB
EGAF50000808062 fastq.gz 445.6 MB
EGAF50000808063 fastq.gz 2.4 GB
EGAF50000808064 fastq.gz 449.5 MB
EGAF50000808065 fastq.gz 1.1 GB
EGAF50000808066 fastq.gz 1.4 GB
EGAF50000808067 fastq.gz 1.5 GB
EGAF50000808068 fastq.gz 1.0 GB
EGAF50000808069 fastq.gz 2.0 GB
EGAF50000808070 fastq.gz 1.0 GB
EGAF50000808071 fastq.gz 1.5 GB
EGAF50000808072 fastq.gz 1.6 GB
EGAF50000808073 fastq.gz 1.6 GB
EGAF50000808074 fastq.gz 1.7 GB
EGAF50000808075 fastq.gz 1.4 GB
EGAF50000808076 fastq.gz 1.1 GB
EGAF50000808077 fastq.gz 1.5 GB
EGAF50000808078 fastq.gz 1.1 GB
EGAF50000808079 fastq.gz 1.0 GB
EGAF50000808080 fastq.gz 858.1 MB
EGAF50000808081 fastq.gz 888.4 MB
EGAF50000808082 fastq.gz 485.6 MB
EGAF50000808083 fastq.gz 487.9 MB
EGAF50000808084 fastq.gz 1.4 GB
EGAF50000808085 fastq.gz 1.5 GB
EGAF50000808086 fastq.gz 966.3 MB
EGAF50000808087 fastq.gz 1.0 GB
EGAF50000808088 fastq.gz 1.6 GB
EGAF50000808089 fastq.gz 866.2 MB
EGAF50000808090 fastq.gz 887.5 MB
EGAF50000808091 fastq.gz 1.2 GB
EGAF50000808092 fastq.gz 1.2 GB
EGAF50000808093 fastq.gz 1.6 GB
EGAF50000808094 fastq.gz 1.3 GB
EGAF50000808095 fastq.gz 1.3 GB
EGAF50000808096 fastq.gz 421.6 MB
EGAF50000808097 fastq.gz 694.0 MB
EGAF50000808098 fastq.gz 1.2 GB
EGAF50000808099 fastq.gz 1.3 GB
EGAF50000808100 fastq.gz 1.6 GB
EGAF50000808101 fastq.gz 1.3 GB
EGAF50000808102 fastq.gz 1.0 GB
EGAF50000808103 fastq.gz 473.8 MB
EGAF50000808104 fastq.gz 1.3 GB
EGAF50000808105 fastq.gz 1.9 GB
EGAF50000808106 fastq.gz 996.6 MB
EGAF50000808107 fastq.gz 847.2 MB
EGAF50000808108 fastq.gz 813.5 MB
EGAF50000808109 fastq.gz 1.3 GB
EGAF50000808110 fastq.gz 1.5 GB
EGAF50000808111 fastq.gz 1.1 GB
EGAF50000808112 fastq.gz 1.1 GB
EGAF50000808113 fastq.gz 969.8 MB
EGAF50000808114 fastq.gz 972.7 MB
EGAF50000808115 fastq.gz 921.1 MB
EGAF50000808116 fastq.gz 1.3 GB
EGAF50000808117 fastq.gz 1.5 GB
EGAF50000808118 fastq.gz 599.8 MB
EGAF50000808119 fastq.gz 749.8 MB
EGAF50000808120 fastq.gz 755.5 MB
EGAF50000808121 fastq.gz 877.1 MB
EGAF50000808122 fastq.gz 1.0 GB
EGAF50000808123 fastq.gz 6.0 GB
EGAF50000808124 fastq.gz 834.0 MB
EGAF50000808125 fastq.gz 1.2 GB
EGAF50000808126 fastq.gz 563.9 MB
EGAF50000808127 fastq.gz 1.4 GB
EGAF50000808128 fastq.gz 1.9 GB
128 Files (162.4 GB)