About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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Tissue and Blood Paired Whole Genome Sequencing

This dataset contains: Raw BAM and FASTQ files associated with study IDs that had both tissue and blood samples analysed.

Request Access

DUO:0000006
version: 2021-02-23

health or medical or biomedical research

This data use permission indicates that use is allowed for health/medical/biomedical purposes; does not include the study of population origins or ancestry.

DUO:0000019
version: 2021-02-23

publication required

This data use modifier indicates that requestor agrees to make results of studies using the data available to the larger scientific community.

DUO:0000021
version: 2021-02-23

ethics approval required

This data use modifier indicates that the requestor must provide documentation of local IRB/ERB approval.

DUO:0000025
version: 2021-02-23

time limit on use

This data use modifier indicates that use is approved for a specific number of months.

DUO:0000026
version: 2021-02-23

user specific restriction

This data use modifier indicates that use is limited to use by approved users.

DUO:0000027
version: 2021-02-23

project specific restriction

This data use modifier indicates that use is limited to use within an approved project.

DUO:0000028
version: 2021-02-23

institution specific restriction

This data use modifier indicates that use is limited to use within an approved institution.

CUP-COMP Data Access Committee Policy

At the Christie NHS Foundation Trust we are committed to making research data available to other researchers wherever possible. The CUP-COMP study was funded by Innovate UK and the sharing of data is in line with the UKRI policy. The chief investigator is substantively employed by The University of Manchester and conducts research in accordance with the institution’s Code of Good Research Conduct. This study was sponsored by The Christie NHS Foundation Trust. The sharing of research data obtained from Christie sponsored studies outside of the regulatory approved study is compliant with the Trust’s information sharing policy. In accordance with this policy, the requesting lead applicant is required to complete a data release request form. To access study data for this Christie sponsored study, we ask that the requestor contact the data access committee to obtain the current version of the study data release request form. The study team will be asked to complete the study data request form and return this to the data access committee administrator. In accordance with the best practice guidance for data access committees as published by the EGA, additional checks may be performed by the Trust to verify the institution and identity of the requestor. The request will be reviewed by a data access review panel which includes representation form the CUP COMP study team, study sponsor and information governance representation from the Trust. The requestor must also agree to the terms and conditions set out in the data access agreement and if applicable any overarching research agreement with The Christie. Following signature of the relevant agreements, the data access committee will approve the release of the requested data.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000001821 Cancer Genomics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000833707 bam 121.5 GB
EGAF50000833708 bam 66.3 GB
EGAF50000833709 bam 51.4 GB
EGAF50000833710 bam 102.8 GB
EGAF50000833711 bam 76.0 GB
EGAF50000833712 bam 56.0 GB
EGAF50000833713 bam 113.5 GB
EGAF50000833714 bam 56.7 GB
EGAF50000833715 bam 65.7 GB
EGAF50000833716 bam 96.8 GB
EGAF50000833717 bam 70.3 GB
EGAF50000833718 bam 62.7 GB
EGAF50000833719 bam 119.5 GB
EGAF50000833720 bam 99.8 GB
EGAF50000833721 bam 97.1 GB
EGAF50000833722 bam 154.6 GB
EGAF50000833723 bam 75.3 GB
EGAF50000833724 bam 67.6 GB
EGAF50000833725 bam 69.6 GB
EGAF50000833726 bam 62.0 GB
EGAF50000833727 bam 55.5 GB
EGAF50000833728 bam 59.2 GB
EGAF50000833729 bam 56.9 GB
EGAF50000833730 bam 62.1 GB
EGAF50000833731 bam 114.2 GB
EGAF50000833732 bam 110.2 GB
EGAF50000833733 bam 63.7 GB
EGAF50000833734 bam 69.7 GB
EGAF50000833735 bam 36.3 GB
EGAF50000833736 bam 59.8 GB
EGAF50000833737 bam 57.4 GB
EGAF50000833738 bam 62.7 GB
EGAF50000833739 bam 57.3 GB
EGAF50000833740 fastq.gz 63.6 GB
EGAF50000833741 fastq.gz 67.3 GB
EGAF50000833742 fastq.gz 35.5 GB
EGAF50000833743 fastq.gz 33.5 GB
EGAF50000833744 fastq.gz 116.2 GB
EGAF50000833746 fastq.gz 70.3 GB
EGAF50000833747 fastq.gz 59.8 GB
EGAF50000833748 fastq.gz 57.6 GB
EGAF50000833749 fastq.gz 59.4 GB
EGAF50000833750 fastq.gz 37.1 GB
EGAF50000833751 fastq.gz 33.5 GB
EGAF50000833752 fastq.gz 59.3 GB
EGAF50000833753 fastq.gz 57.3 GB
EGAF50000833754 fastq.gz 87.5 GB
EGAF50000833755 fastq.gz 40.4 GB
EGAF50000833756 fastq.gz 37.6 GB
EGAF50000833757 fastq.gz 39.7 GB
EGAF50000833758 fastq.gz 31.0 GB
EGAF50000833759 fastq.gz 32.7 GB
EGAF50000833760 fastq.gz 39.3 GB
EGAF50000833761 fastq.gz 45.3 GB
EGAF50000833762 fastq.gz 32.3 GB
EGAF50000833763 fastq.gz 33.3 GB
EGAF50000833765 bam 107.3 GB
EGAF50000833766 bam 103.5 GB
EGAF50000833767 bam 64.4 GB
EGAF50000833768 bam 145.8 GB
EGAF50000833769 bam 182.9 GB
EGAF50000833770 bam 118.1 GB
EGAF50000833771 bam 90.4 GB
EGAF50000833772 bam 60.7 GB
EGAF50000833773 bam 60.2 GB
EGAF50000833774 bam 51.9 GB
EGAF50000833775 bam 36.6 GB
EGAF50000833776 fastq.gz 36.6 GB
EGAF50000833777 fastq.gz 35.3 GB
EGAF50000833778 bam 70.5 GB
EGAF50000833779 bam 52.6 GB
EGAF50000833780 fastq.gz 61.5 GB
EGAF50000833781 fastq.gz 60.1 GB
EGAF50000833782 fastq.gz 71.5 GB
EGAF50000833783 fastq.gz 68.2 GB
EGAF50000833784 fastq.gz 66.3 GB
EGAF50000833785 fastq.gz 42.4 GB
EGAF50000833786 fastq.gz 32.2 GB
EGAF50000833787 bam 68.2 GB
EGAF50000833788 fastq.gz 65.6 GB
EGAF50000833789 fastq.gz 110.4 GB
EGAF50000833790 fastq.gz 74.6 GB
EGAF50000833791 fastq.gz 61.3 GB
EGAF50000833792 fastq.gz 69.2 GB
EGAF50000833793 fastq.gz 72.4 GB
EGAF50000833794 fastq.gz 74.5 GB
EGAF50000833795 fastq.gz 40.9 GB
EGAF50000833796 fastq.gz 30.0 GB
EGAF50000833797 fastq.gz 30.8 GB
EGAF50000833798 fastq.gz 43.4 GB
EGAF50000833799 fastq.gz 43.7 GB
EGAF50000833800 fastq.gz 45.0 GB
EGAF50000833801 fastq.gz 42.6 GB
EGAF50000833802 fastq.gz 37.3 GB
EGAF50000833803 fastq.gz 70.6 GB
EGAF50000833804 fastq.gz 84.0 GB
EGAF50000833805 fastq.gz 66.6 GB
EGAF50000833806 fastq.gz 34.6 GB
EGAF50000833807 fastq.gz 34.8 GB
EGAF50000833808 fastq.gz 36.6 GB
EGAF50000833809 fastq.gz 37.9 GB
EGAF50000833812 bam 52.0 GB
EGAF50000833813 fastq.gz 61.7 GB
EGAF50000833814 fastq.gz 52.7 GB
EGAF50000833815 fastq.gz 55.0 GB
EGAF50000833816 fastq.gz 90.7 GB
EGAF50000833817 fastq.gz 93.3 GB
EGAF50000833818 fastq.gz 67.8 GB
EGAF50000833819 fastq.gz 19.8 GB
EGAF50000833820 fastq.gz 20.3 GB
EGAF50000833821 fastq.gz 39.1 GB
EGAF50000833822 vcf.gz 4.3 MB
EGAF50000833823 vcf.gz 49.7 kB Report
EGAF50000833824 vcf.gz 1.8 kB Report
EGAF50000833825 vcf.gz 441.3 MB Report
EGAF50000833826 vcf.gz 26.3 kB Report
EGAF50000833827 vcf.gz 2.0 kB Report
EGAF50000833828 vcf.gz 31.2 kB Report
EGAF50000833829 vcf.gz 3.2 MB Report
EGAF50000833830 vcf.gz 28.5 kB Report
EGAF50000833831 vcf.gz 1.9 kB Report
EGAF50000833832 vcf.gz 2.3 MB Report
EGAF50000833833 vcf.gz 2.0 kB Report
EGAF50000833834 vcf.gz 24.7 kB Report
EGAF50000833835 vcf.gz 1.5 MB Report
EGAF50000833836 vcf.gz 2.9 MB Report
EGAF50000833837 vcf.gz 41.4 kB Report
EGAF50000833838 vcf.gz 2.0 kB Report
EGAF50000833839 vcf.gz 35.4 kB Report
EGAF50000833840 vcf.gz 1.9 kB Report
EGAF50000833841 vcf.gz 54.5 kB Report
EGAF50000833842 vcf.gz 2.0 MB Report
EGAF50000833843 vcf.gz 82.0 kB Report
EGAF50000833844 vcf.gz 2.0 kB Report
EGAF50000833845 vcf.gz 41.5 kB Report
EGAF50000833846 vcf.gz 2.7 MB Report
EGAF50000833847 vcf.gz 2.0 kB Report
EGAF50000833848 vcf.gz 31.5 kB Report
EGAF50000833849 vcf.gz 1.2 MB Report
EGAF50000833850 vcf.gz 4.2 MB Report
EGAF50000833851 vcf.gz 2.0 kB Report
EGAF50000833852 vcf.gz 40.7 kB Report
EGAF50000833853 vcf.gz 268.7 kB Report
EGAF50000833854 vcf.gz 45.3 kB Report
EGAF50000833855 vcf.gz 438.8 MB Report
EGAF50000833856 vcf.gz 915.2 kB Report
EGAF50000833857 vcf.gz 49.8 kB Report
EGAF50000833858 vcf.gz 2.2 MB Report
EGAF50000833859 vcf.gz 40.7 kB Report
EGAF50000833860 vcf.gz 1.1 MB
EGAF50000833861 vcf.gz 54.9 kB Report
EGAF50000833862 vcf.gz 29.5 kB Report
EGAF50000833863 vcf.gz 4.6 MB
EGAF50000833864 vcf.gz 2.0 kB Report
EGAF50000833865 vcf.gz 1.9 kB Report
EGAF50000833866 vcf.gz 4.3 MB
EGAF50000833867 vcf.gz 52.2 kB Report
EGAF50000833868 vcf.gz 1.1 MB Report
EGAF50000833869 vcf.gz 448.5 MB Report
EGAF50000833870 vcf.gz 433.3 MB Report
EGAF50000833871 vcf.gz 1.1 MB Report
EGAF50000833872 vcf.gz 48.1 kB Report
EGAF50000833873 vcf.gz 447.7 MB Report
EGAF50000833874 vcf.gz 31.0 kB Report
EGAF50000833875 vcf.gz 1.1 MB Report
EGAF50000833876 vcf.gz 30.7 kB Report
EGAF50000833877 vcf.gz 1.3 MB Report
EGAF50000833878 vcf.gz 1.2 MB Report
EGAF50000833879 vcf.gz 3.9 MB
EGAF50000833880 vcf.gz 50.7 kB Report
EGAF50000833881 vcf.gz 436.5 MB Report
EGAF50000833882 vcf.gz 50.7 kB Report
EGAF50000833883 vcf.gz 1.8 kB Report
EGAF50000833884 vcf.gz 4.5 MB
EGAF50000833885 vcf.gz 1.8 kB Report
EGAF50000833886 vcf.gz 819.3 kB Report
EGAF50000833887 vcf.gz 3.8 MB
EGAF50000833888 vcf.gz 447.2 MB Report
EGAF50000833889 vcf.gz 4.0 MB
EGAF50000833890 vcf.gz 52.6 kB Report
EGAF50000833891 vcf.gz 454.7 MB Report
EGAF50000833892 vcf.gz 1.8 kB Report
EGAF50000833893 vcf.gz 1.1 MB Report
EGAF50000833894 vcf.gz 5.1 MB Report
EGAF50000833895 vcf.gz 2.1 MB Report
EGAF50000833896 vcf.gz 1.8 kB Report
EGAF50000833897 vcf.gz 850.5 kB Report
EGAF50000833898 vcf.gz 3.9 MB
EGAF50000833899 vcf.gz 56.2 kB Report
EGAF50000833900 vcf.gz 1.8 kB Report
EGAF50000833901 vcf.gz 48.5 kB Report
EGAF50000833902 vcf.gz 1.8 kB Report
EGAF50000833903 vcf.gz 456.3 MB Report
EGAF50000833904 vcf.gz 436.1 MB Report
EGAF50000833905 vcf.gz 444.6 MB Report
EGAF50000833906 vcf.gz 4.1 MB
EGAF50000833907 vcf.gz 2.0 kB Report
EGAF50000833908 vcf.gz 79.3 MB Report
EGAF50000833909 vcf.gz 2.5 MB Report
EGAF50000833910 vcf.gz 1.9 MB Report
EGAF50000833911 vcf.gz 57.8 kB Report
EGAF50000833912 vcf.gz 1.2 MB Report
EGAF50000833913 vcf.gz 1.4 MB Report
EGAF50000833914 vcf.gz 29.3 kB Report
EGAF50000833915 vcf.gz 1.3 MB Report
EGAF50000833916 vcf.gz 3.4 MB Report
EGAF50000833917 vcf.gz 34.2 kB Report
EGAF50000833918 vcf.gz 2.9 MB Report
EGAF50000833919 vcf.gz 2.0 kB Report
EGAF50000833920 vcf.gz 3.5 MB Report
EGAF50000833921 vcf.gz 1.9 kB Report
EGAF50000833922 vcf.gz 22.8 kB Report
EGAF50000833923 vcf.gz 1.5 MB Report
EGAF50000833924 vcf.gz 41.8 kB Report
EGAF50000833925 vcf.gz 7.9 MB Report
EGAF50000833926 vcf.gz 2.0 kB Report
EGAF50000833927 vcf.gz 49.1 kB Report
EGAF50000833928 vcf.gz 9.5 MB Report
EGAF50000833929 vcf.gz 28.3 kB Report
EGAF50000833930 vcf.gz 980.4 kB
EGAF50000833931 vcf.gz 23.0 kB Report
EGAF50000833932 vcf.gz 29.3 kB Report
EGAF50000833933 vcf.gz 1.2 MB Report
EGAF50000833934 vcf.gz 1.4 MB Report
EGAF50000833935 vcf.gz 25.9 kB Report
EGAF50000833936 vcf.gz 22.8 kB Report
EGAF50000833937 vcf.gz 27.2 kB Report
EGAF50000833938 vcf.gz 99.1 MB Report
EGAF50000833939 vcf.gz 2.0 kB Report
EGAF50000833940 vcf.gz 25.7 kB Report
EGAF50000833941 vcf.gz 1.3 MB Report
EGAF50000833942 vcf.gz 1.9 kB Report
EGAF50000833943 vcf.gz 23.8 kB Report
EGAF50000833944 vcf.gz 1.5 MB Report
EGAF50000833945 vcf.gz 867.6 kB Report
EGAF50000833946 vcf.gz 41.4 kB Report
EGAF50000833947 vcf.gz 1.8 kB Report
EGAF50000833948 vcf.gz 328.8 kB Report
EGAF50000833949 vcf.gz 2.5 MB
EGAF50000833950 vcf.gz 1.8 kB Report
EGAF50000833951 vcf.gz 1.0 MB Report
EGAF50000833952 vcf.gz 4.2 MB
EGAF50000833953 vcf.gz 51.7 kB Report
EGAF50000833954 vcf.gz 1.8 kB Report
EGAF50000833955 vcf.gz 448.2 MB Report
EGAF50000833956 vcf.gz 925.3 kB Report
EGAF50000833957 vcf.gz 50.2 kB Report
EGAF50000833958 vcf.gz 448.9 MB Report
EGAF50000833959 vcf.gz 1.8 kB Report
EGAF50000833960 vcf.gz 4.4 MB
EGAF50000833961 vcf.gz 48.6 kB Report
EGAF50000833962 vcf.gz 1.8 kB Report
EGAF50000833963 vcf.gz 441.3 MB Report
EGAF50000833964 vcf.gz 1.0 MB Report
EGAF50000833965 vcf.gz 4.2 MB
EGAF50000833966 vcf.gz 48.7 kB Report
EGAF50000833967 vcf.gz 1.8 kB Report
EGAF50000833968 vcf.gz 843.4 kB Report
EGAF50000833969 vcf.gz 3.8 MB
EGAF50000833970 vcf.gz 441.5 MB Report
EGAF50000833971 vcf.gz 1.8 kB Report
EGAF50000833972 vcf.gz 1.1 MB Report
EGAF50000833973 vcf.gz 440.2 MB Report
EGAF50000833974 vcf.gz 1.8 kB Report
EGAF50000833975 vcf.gz 872.9 kB Report
EGAF50000833976 vcf.gz 3.9 MB
EGAF50000833977 vcf.gz 51.2 kB Report
EGAF50000833978 vcf.gz 1.8 kB Report
EGAF50000833979 vcf.gz 935.7 kB Report
EGAF50000833980 vcf.gz 4.0 MB
EGAF50000833981 vcf.gz 51.3 kB Report
271 Files (7.2 TB)