About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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WGS and RNA-seq data of PC9 erlotinib-resistant and sensitive cell lines

This dataset contains whole genome sequencing (WGS) and RNA sequencing (RNA-seq) FASTQ files from two PC9 NSCLC cell lines: erlotinib-resistant (PC9-ER-R) and erlotinib-sensitive parental (PC9-ER-S). A total of 4 paired-end FASTQ file pairs were generated using Illumina NovaSeq 6000, comprising 2 WGS and 2 RNA-seq libraries. Data were generated to investigate RAF1 ecDNA-mediated acquired erlotinib resistance mechanisms.

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DUO:0000006
version: 2021-02-23

health or medical or biomedical research

This data use permission indicates that use is allowed for health/medical/biomedical purposes; does not include the study of population origins or ancestry.

DUO:0000018
version: 2021-02-23

not for profit, non commercial use only

This data use modifier indicates that use of the data is limited to not-for-profit organizations and not-for-profit use, non-commercial use.

NSCLC PC9 erlotinib RAF1 Data Access Policy

Access to this dataset is restricted to researchers conducting non-commercial academic research related to cancer genomics and drug resistance mechanisms. Requestors must submit a research proposal outlining the intended use of the data. Data must not be shared with third parties without prior approval from the DAC.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000001832 Cancer Genomics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000835893 fastq.gz 31.9 GB
EGAF50000835894 fastq.gz 30.5 GB
EGAF50000835895 fastq.gz 30.5 GB
EGAF50000835896 fastq.gz 29.1 GB
EGAF50000835897 fastq.gz 2.2 GB
EGAF50000835898 fastq.gz 2.3 GB
EGAF50000835899 fastq.gz 2.4 GB
EGAF50000835900 fastq.gz 2.5 GB
8 Files (131.5 GB)