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WES_sarcoma_PDXs

Whole exome-sequencing for sarcoma PDXs, along with their matched original tumors when available.

Request Access

DUO:0000006
version: 2021-02-23

health or medical or biomedical research

This data use permission indicates that use is allowed for health/medical/biomedical purposes; does not include the study of population origins or ancestry.

DUO:0000019
version: 2021-02-23

publication required

This data use modifier indicates that requestor agrees to make results of studies using the data available to the larger scientific community.

DUO:0000025
version: 2021-02-23

time limit on use

This data use modifier indicates that use is approved for a specific number of months.

DUO:0000026
version: 2021-02-23

user specific restriction

This data use modifier indicates that use is limited to use by approved users.

DUO:0000027
version: 2021-02-23

project specific restriction

This data use modifier indicates that use is limited to use within an approved project.

DUO:0000028
version: 2021-02-23

institution specific restriction

This data use modifier indicates that use is limited to use within an approved institution.

Data access policy for Division of Cancer Evolution, National Cancer Center Research Institute

DATA ACCESS AGREEMENT This Data Access Agreement (“Agreement”) governs the terms on which access will be granted to the sequence data generated by the Division of Cancer Evolution National Cancer Center Research Institute Data Access Committee. When signing this Agreement, the User agrees to be bound by the terms and conditions of access set out in this Agreement. For the sake of clarity, the terms of access set out in this Agreement apply both to the User and the User’s Institution (as defined below). User Institution and User are referred to within the Agreement as “You” and “Your” shall be construed accordingly. Definitions: Project team means Division of Cancer Evolution, National Cancer Center Research Institute, Tokyo, Japan. Data means all sequence data set of cancer cell lines, obtained from the Project team. User means a researcher whose User Institution has previously completed this Data Access Agreement and has received acknowledgement of its acceptance. Publications means, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. User Institution means the organisation at which the User is employed, affiliated or enrolled. i Terms and Conditions: In signing this Agreement: 1. You agree to use the Data only for the advancement of medical research. 2. You agree not to use the Data or any part thereof for the creation of products for sale or for any commercial purpose. 3. You agree to preserve, at all times, the confidentiality of information and Data pertaining to Data Subjects. In particular, You undertake not to use, or attempt to use the Data to compromise or otherwise infringe the confidentiality of information on Data Subjects and their right to privacy. 4. You agree not to attempt to link the Data provided under this Agreement to other information or archive Data available for the data sets provided, even if access to that Data has been formally granted to You, or it is freely available without restriction, without specific permission being sought from the relevant access committees. 5. You agree not to transfer or disclose the Data, in whole or part, or any identifiable material derived from the Data, to others, except as necessary for data/safety monitoring or programme management. Should You wish to share the Data with a collaborator outside the same Institution, the third party must make a separate application for access to the Data. 6. You agree to use the Data for the approved purpose and project described in Your application; use of the Data for a new purpose or project will require a new application and approval. 7. A Data access account using a non-institutional email address is established if You agree to notify EGA and the Division of Cancer Evolution, National Cancer Center Research Institute Data Access Committee within 30 days of any changes of, or departures from the institution specified in Your application. 8. You accept that Data will be reissued from time to time, with suitable versioning. If the reissue is at the request of sample donors and/or other ethical scrutiny, You will destroy earlier versions of the Data. 9. You agree to abide by the terms outlined in the Project team 'Publications Policy' as set out in Schedule 1. 10. You agree to acknowledge in any work based in whole or part on the Data, the published paper from which the Data derives, the version of the Data, and the role of the Project team. Suitable wording is provided in the Publications Policy given in Schedule 1. 11. You accept that the Project team, the original Data creators, depositors or copyright holders, or the funders of the Data or any part of the Data supplied: a) bear no legal responsibility for the accuracy or comprehensiveness of the Data; and b) accept no liability for indirect, consequential, or incidental, damages or losses arising from use of the Data, or from the unavailability of, or break in access to, the Data for whatever reason. 12. You understand and acknowledge that the Data is protected by copyright and other intellectual property rights, and that duplication, except as reasonably required to carry out Your research with the Data, or sale of all or part of the Data on any media is not permitted. 13. You recognise that nothing in this Agreement shall operate to transfer to You any intellectual property rights relating to the Data. You have the right to develop intellectual property based on comparisons with Your own data. 14. You agree not to make intellectual property claims on the Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of the Data, or conclusion drawn directly from the Data. 15. You can elect to perform further research that would add intellectual and resource capital to the Data and decide to obtain intellectual property rights on these downstream discoveries. In this case, You agree to implement licensing policies that will not obstruct further research, and follow the U.S. National Institutes of Health’s, Best Practices for the Licensing of Genomic Inventions or a similar national guideline that is in conformity with the OECD, Guidelines for the Licensing of the Genetic Inventions. 16. You agree to notify the Division of Cancer Evolution, National Cancer Center Research Institute Data Access Committee in writing of any new intellectual property. You agree to, on request, provide a non-exclusive, royalty-free licence to the Division of Cancer Evolution, National Cancer Center Research Institute Data Access Committee for their own research and educational uses. 17. You accept that this Agreement will terminate immediately upon any breach of this Agreement by You and You will be required to destroy any Data held. 18. You accept that it may be necessary for the Project team or its appointed agent to alter the terms of this Agreement from time to time in order to address new concerns. In this event, the Project team or its appointed agent will contact You to inform You of any changes and You agree that Your continued use of the Data shall be dependent on the parties entering into a new version of the Agreement. 19. Access to the Data is granted for a period of 2 years. Where it is necessary to extend the period of access, You agree to contact the Division of Cancer Evolution, National Cancer Center Research Institute Data Access Committee, in advance of the expiry of the period of access. At the end of the period of access, You agree to destroy all copies of the Data, except as required by publication practices or law to retain them. 20. You agree that You will submit a report to the Division of Cancer Evolution, National Cancer Center Research Institute Data Access Committee, if requested, on completion of the agreed purpose. The Division of Cancer Evolution, National Cancer Center Research Institute Data Access Committee agrees to treat the report and all information, data, results, and conclusions contained within such report as confidential information belonging to You. 21. You accept that the Data is protected by and subject to international laws and that You are responsible for ensuring compliance with any such applicable law. The Division of Cancer Evolution, National Cancer Center Research Institute Data Access Committee reserves the right to request and inspect data security and management documentation to ensure the adequacy of data protection measures in countries that have no national laws comparable to that which pertain in Japan. 22. This Agreement shall be governed by, and construed and interpreted under the laws of Japan. All dispute pertaining to this Agreement shall be subject to the exclusive jurisdiction of the Tokyo District Court of Japan for the first instance.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000001860 Cancer Genomics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
EGAF50000854176 bam 7.5 GB
EGAF50000854177 bam 12.0 GB
EGAF50000854178 bam 9.1 GB
EGAF50000854179 bam 7.9 GB
EGAF50000854180 bam 8.4 GB
EGAF50000854181 bam 5.2 GB
EGAF50000854182 bam 8.3 GB
EGAF50000854183 bam 11.8 GB
EGAF50000854184 bam 4.8 GB
EGAF50000854185 bam 6.0 GB
EGAF50000854186 bam 5.7 GB
EGAF50000854187 bam 3.7 GB
EGAF50000854188 bam 6.1 GB
EGAF50000854189 bam 9.5 GB
EGAF50000854190 bam 5.3 GB
EGAF50000854191 bam 10.3 GB
EGAF50000854192 bam 9.7 GB
EGAF50000854193 bam 13.9 GB
EGAF50000854194 bam 6.7 GB
EGAF50000854195 bam 7.8 GB
EGAF50000854196 bam 10.7 GB
EGAF50000854197 bam 13.1 GB
EGAF50000854198 bam 7.0 GB
EGAF50000854199 bam 8.9 GB
EGAF50000854200 bam 10.0 GB
EGAF50000854201 bam 9.3 GB
EGAF50000854202 bam 7.2 GB
EGAF50000854203 bam 10.0 GB
EGAF50000854204 bam 9.7 GB
EGAF50000854205 bam 12.5 GB
EGAF50000854206 bam 10.9 GB
EGAF50000854207 bam 6.1 GB
EGAF50000854208 bam 9.4 GB
EGAF50000854209 bam 7.6 GB
EGAF50000854210 bam 21.9 GB
EGAF50000854211 bam 6.9 GB
EGAF50000854212 bam 7.5 GB
EGAF50000854213 bam 12.3 GB
EGAF50000854214 bam 13.2 GB
EGAF50000854215 bam 9.2 GB
EGAF50000854216 bam 10.6 GB
EGAF50000854217 bam 9.6 GB
EGAF50000854218 bam 10.4 GB
EGAF50000854219 bam 5.9 GB
EGAF50000854220 bam 7.9 GB
EGAF50000854221 bam 24.0 GB
EGAF50000854222 bam 7.9 GB
EGAF50000854223 bam 12.0 GB
EGAF50000854224 bam 8.8 GB
EGAF50000854225 bam 9.5 GB
EGAF50000854226 bam 6.0 GB
EGAF50000854227 bam 11.5 GB
EGAF50000854228 bam 11.0 GB
EGAF50000854229 bam 15.2 GB
EGAF50000854230 bam 9.6 GB
EGAF50000854231 bam 8.8 GB
EGAF50000854232 bam 6.8 GB
EGAF50000854233 bam 9.7 GB
EGAF50000854234 bam 11.8 GB
EGAF50000854235 bam 7.1 GB
EGAF50000854236 bam 12.0 GB
EGAF50000854237 bam 10.5 GB
EGAF50000854238 bam 6.4 GB
EGAF50000854239 bam 10.7 GB
EGAF50000854240 bam 7.5 GB
EGAF50000854241 bam 26.6 GB
EGAF50000854242 bam 7.4 GB
EGAF50000854243 bam 9.6 GB
EGAF50000854244 bam 11.2 GB
EGAF50000854245 bam 17.2 GB
EGAF50000854246 bam 13.5 GB
EGAF50000854247 bam 7.8 GB
EGAF50000854248 bam 11.6 GB
EGAF50000854249 bam 4.9 GB
EGAF50000854250 bam 4.9 GB
EGAF50000854251 bam 20.0 GB
EGAF50000854252 bam 8.8 GB
EGAF50000854253 bam 9.8 GB
EGAF50000854254 bam 8.4 GB
EGAF50000854255 bam 7.2 GB
EGAF50000854256 bam 9.2 GB
EGAF50000854257 bam 6.9 GB
EGAF50000854258 bam 9.5 GB
EGAF50000854259 bam 8.5 GB
EGAF50000854260 bam 5.4 GB
EGAF50000854261 bam 12.1 GB
EGAF50000854262 bam 12.4 GB
EGAF50000854263 bam 10.5 GB
EGAF50000854264 bam 7.4 GB
EGAF50000854265 bam 12.4 GB
EGAF50000854266 bam 11.5 GB
EGAF50000854267 bam 10.4 GB
EGAF50000854268 bam 7.1 GB
EGAF50000854269 bam 14.9 GB
EGAF50000854270 bam 9.3 GB
EGAF50000854271 bam 7.0 GB
EGAF50000854272 bam 9.1 GB
EGAF50000854273 bam 6.5 GB
EGAF50000854274 bam 10.4 GB
EGAF50000854275 bam 11.6 GB
EGAF50000854276 bam 11.0 GB
EGAF50000854277 bam 8.9 GB
EGAF50000854278 bam 10.2 GB
EGAF50000854279 bam 9.1 GB
EGAF50000854280 bam 9.2 GB
EGAF50000854281 bam 7.6 GB
EGAF50000854282 bam 6.2 GB
EGAF50000854283 bam 13.1 GB
EGAF50000854284 bam 8.7 GB
EGAF50000854285 bam 16.7 GB
EGAF50000854286 bam 8.6 GB
EGAF50000854287 bam 8.3 GB
EGAF50000854288 bam 10.6 GB
EGAF50000854289 bam 10.2 GB
EGAF50000854290 bam 9.9 GB
EGAF50000854291 bam 6.1 GB
EGAF50000854292 bam 11.1 GB
EGAF50000854293 bam 10.7 GB
EGAF50000854294 bam 9.8 GB
EGAF50000854295 bam 7.7 GB
EGAF50000854296 bam 10.5 GB
EGAF50000854297 bam 9.7 GB
EGAF50000854298 bam 11.6 GB
EGAF50000854299 bam 6.9 GB
EGAF50000854300 bam 7.7 GB
EGAF50000854301 bam 10.0 GB
EGAF50000854302 bam 9.6 GB
EGAF50000854303 bam 10.8 GB
EGAF50000854304 bam 11.0 GB
EGAF50000854305 bam 6.2 GB
EGAF50000854306 bam 8.8 GB
EGAF50000854307 bam 10.4 GB
EGAF50000854308 bam 11.0 GB
EGAF50000854309 bam 8.4 GB
EGAF50000854310 bam 10.0 GB
EGAF50000854311 bam 9.0 GB
EGAF50000854312 bam 10.7 GB
EGAF50000854313 bam 9.9 GB
EGAF50000854314 bam 6.4 GB
EGAF50000854315 bam 11.4 GB
EGAF50000854316 bam 10.2 GB
EGAF50000854317 bam 10.7 GB
EGAF50000854318 bam 8.1 GB
EGAF50000854319 bam 7.5 GB
EGAF50000854320 bam 7.2 GB
EGAF50000854321 bam 9.3 GB
EGAF50000854322 bam 9.3 GB
EGAF50000854323 bam 6.0 GB
EGAF50000854324 bam 12.9 GB
EGAF50000854325 bam 11.8 GB
EGAF50000854326 bam 6.5 GB
EGAF50000854327 bam 12.3 GB
EGAF50000854328 bam 9.6 GB
EGAF50000854329 bam 8.5 GB
EGAF50000854330 bam 7.5 GB
EGAF50000854331 bam 7.0 GB
EGAF50000854332 bam 9.9 GB
EGAF50000854333 bam 7.7 GB
EGAF50000854334 bam 7.7 GB
EGAF50000854335 bam 9.0 GB
EGAF50000854336 bam 10.3 GB
EGAF50000854337 bam 6.4 GB
EGAF50000854338 bam 7.2 GB
EGAF50000854339 bam 6.9 GB
EGAF50000854340 bam 8.2 GB
EGAF50000854341 bam 10.5 GB
EGAF50000854342 bam 10.1 GB
EGAF50000854343 bam 11.9 GB
EGAF50000854344 bam 6.1 GB
EGAF50000854345 bam 10.9 GB
EGAF50000854346 bam 9.5 GB
EGAF50000854347 bam 5.5 GB
EGAF50000854348 bam 8.1 GB
EGAF50000854349 bam 11.8 GB
EGAF50000854350 bam 11.8 GB
EGAF50000854351 bam 6.7 GB
EGAF50000854352 bam 11.0 GB
EGAF50000854353 bam 8.6 GB
EGAF50000854354 bam 7.4 GB
EGAF50000854355 bam 17.2 GB
EGAF50000854356 bam 7.0 GB
EGAF50000854357 bam 9.7 GB
EGAF50000854358 bam 17.8 GB
EGAF50000854359 bam 12.4 GB
EGAF50000854360 bam 7.9 GB
185 Files (1.8 TB)