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RNA_sarcoma_PDXs

RNA sequencing data for sarcoma patient-derived xenografts.

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DUO:0000006
version: 2021-02-23

health or medical or biomedical research

This data use permission indicates that use is allowed for health/medical/biomedical purposes; does not include the study of population origins or ancestry.

DUO:0000019
version: 2021-02-23

publication required

This data use modifier indicates that requestor agrees to make results of studies using the data available to the larger scientific community.

DUO:0000025
version: 2021-02-23

time limit on use

This data use modifier indicates that use is approved for a specific number of months.

DUO:0000026
version: 2021-02-23

user specific restriction

This data use modifier indicates that use is limited to use by approved users.

DUO:0000027
version: 2021-02-23

project specific restriction

This data use modifier indicates that use is limited to use within an approved project.

DUO:0000028
version: 2021-02-23

institution specific restriction

This data use modifier indicates that use is limited to use within an approved institution.

Data access policy for Division of Cancer Evolution, National Cancer Center Research Institute

DATA ACCESS AGREEMENT This Data Access Agreement (“Agreement”) governs the terms on which access will be granted to the sequence data generated by the Division of Cancer Evolution National Cancer Center Research Institute Data Access Committee. When signing this Agreement, the User agrees to be bound by the terms and conditions of access set out in this Agreement. For the sake of clarity, the terms of access set out in this Agreement apply both to the User and the User’s Institution (as defined below). User Institution and User are referred to within the Agreement as “You” and “Your” shall be construed accordingly. Definitions: Project team means Division of Cancer Evolution, National Cancer Center Research Institute, Tokyo, Japan. Data means all sequence data set of cancer cell lines, obtained from the Project team. User means a researcher whose User Institution has previously completed this Data Access Agreement and has received acknowledgement of its acceptance. Publications means, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. User Institution means the organisation at which the User is employed, affiliated or enrolled. i Terms and Conditions: In signing this Agreement: 1. You agree to use the Data only for the advancement of medical research. 2. You agree not to use the Data or any part thereof for the creation of products for sale or for any commercial purpose. 3. You agree to preserve, at all times, the confidentiality of information and Data pertaining to Data Subjects. In particular, You undertake not to use, or attempt to use the Data to compromise or otherwise infringe the confidentiality of information on Data Subjects and their right to privacy. 4. You agree not to attempt to link the Data provided under this Agreement to other information or archive Data available for the data sets provided, even if access to that Data has been formally granted to You, or it is freely available without restriction, without specific permission being sought from the relevant access committees. 5. You agree not to transfer or disclose the Data, in whole or part, or any identifiable material derived from the Data, to others, except as necessary for data/safety monitoring or programme management. Should You wish to share the Data with a collaborator outside the same Institution, the third party must make a separate application for access to the Data. 6. You agree to use the Data for the approved purpose and project described in Your application; use of the Data for a new purpose or project will require a new application and approval. 7. A Data access account using a non-institutional email address is established if You agree to notify EGA and the Division of Cancer Evolution, National Cancer Center Research Institute Data Access Committee within 30 days of any changes of, or departures from the institution specified in Your application. 8. You accept that Data will be reissued from time to time, with suitable versioning. If the reissue is at the request of sample donors and/or other ethical scrutiny, You will destroy earlier versions of the Data. 9. You agree to abide by the terms outlined in the Project team 'Publications Policy' as set out in Schedule 1. 10. You agree to acknowledge in any work based in whole or part on the Data, the published paper from which the Data derives, the version of the Data, and the role of the Project team. Suitable wording is provided in the Publications Policy given in Schedule 1. 11. You accept that the Project team, the original Data creators, depositors or copyright holders, or the funders of the Data or any part of the Data supplied: a) bear no legal responsibility for the accuracy or comprehensiveness of the Data; and b) accept no liability for indirect, consequential, or incidental, damages or losses arising from use of the Data, or from the unavailability of, or break in access to, the Data for whatever reason. 12. You understand and acknowledge that the Data is protected by copyright and other intellectual property rights, and that duplication, except as reasonably required to carry out Your research with the Data, or sale of all or part of the Data on any media is not permitted. 13. You recognise that nothing in this Agreement shall operate to transfer to You any intellectual property rights relating to the Data. You have the right to develop intellectual property based on comparisons with Your own data. 14. You agree not to make intellectual property claims on the Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of the Data, or conclusion drawn directly from the Data. 15. You can elect to perform further research that would add intellectual and resource capital to the Data and decide to obtain intellectual property rights on these downstream discoveries. In this case, You agree to implement licensing policies that will not obstruct further research, and follow the U.S. National Institutes of Health’s, Best Practices for the Licensing of Genomic Inventions or a similar national guideline that is in conformity with the OECD, Guidelines for the Licensing of the Genetic Inventions. 16. You agree to notify the Division of Cancer Evolution, National Cancer Center Research Institute Data Access Committee in writing of any new intellectual property. You agree to, on request, provide a non-exclusive, royalty-free licence to the Division of Cancer Evolution, National Cancer Center Research Institute Data Access Committee for their own research and educational uses. 17. You accept that this Agreement will terminate immediately upon any breach of this Agreement by You and You will be required to destroy any Data held. 18. You accept that it may be necessary for the Project team or its appointed agent to alter the terms of this Agreement from time to time in order to address new concerns. In this event, the Project team or its appointed agent will contact You to inform You of any changes and You agree that Your continued use of the Data shall be dependent on the parties entering into a new version of the Agreement. 19. Access to the Data is granted for a period of 2 years. Where it is necessary to extend the period of access, You agree to contact the Division of Cancer Evolution, National Cancer Center Research Institute Data Access Committee, in advance of the expiry of the period of access. At the end of the period of access, You agree to destroy all copies of the Data, except as required by publication practices or law to retain them. 20. You agree that You will submit a report to the Division of Cancer Evolution, National Cancer Center Research Institute Data Access Committee, if requested, on completion of the agreed purpose. The Division of Cancer Evolution, National Cancer Center Research Institute Data Access Committee agrees to treat the report and all information, data, results, and conclusions contained within such report as confidential information belonging to You. 21. You accept that the Data is protected by and subject to international laws and that You are responsible for ensuring compliance with any such applicable law. The Division of Cancer Evolution, National Cancer Center Research Institute Data Access Committee reserves the right to request and inspect data security and management documentation to ensure the adequacy of data protection measures in countries that have no national laws comparable to that which pertain in Japan. 22. This Agreement shall be governed by, and construed and interpreted under the laws of Japan. All dispute pertaining to this Agreement shall be subject to the exclusive jurisdiction of the Tokyo District Court of Japan for the first instance.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000001860 Cancer Genomics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
EGAF50000854361 bam 4.2 GB
EGAF50000854362 bam 5.5 GB
EGAF50000854363 bam 6.0 GB
EGAF50000854364 bam 6.9 GB
EGAF50000854365 bam 4.1 GB
EGAF50000854366 bam 5.7 GB
EGAF50000854367 bam 6.5 GB
EGAF50000854368 bam 5.2 GB
EGAF50000854369 bam 4.7 GB
EGAF50000854370 bam 6.0 GB
EGAF50000854371 bam 5.2 GB
EGAF50000854372 bam 6.7 GB
EGAF50000854373 bam 5.6 GB
EGAF50000854374 bam 5.9 GB
EGAF50000854375 bam 8.3 GB
EGAF50000854376 bam 7.4 GB
EGAF50000854377 bam 7.2 GB
EGAF50000854378 bam 3.5 GB
EGAF50000854379 bam 4.7 GB
EGAF50000854380 bam 6.0 GB
EGAF50000854381 bam 6.8 GB
EGAF50000854382 bam 5.7 GB
EGAF50000854383 bam 7.0 GB
EGAF50000854384 bam 7.8 GB
EGAF50000854385 bam 5.3 GB
EGAF50000854386 bam 5.6 GB
EGAF50000854387 bam 4.5 GB
EGAF50000854388 bam 6.7 GB
EGAF50000854389 bam 6.3 GB
EGAF50000854390 bam 5.0 GB
EGAF50000854391 bam 5.3 GB
EGAF50000854392 bam 5.0 GB
EGAF50000854393 bam 5.7 GB
EGAF50000854394 bam 1.1 GB
EGAF50000854395 bam 5.5 GB
EGAF50000854396 bam 5.5 GB
EGAF50000854397 bam 6.4 GB
EGAF50000854398 bam 5.9 GB
EGAF50000854399 bam 7.4 GB
EGAF50000854400 bam 6.7 GB
EGAF50000854401 bam 5.3 GB
EGAF50000854402 bam 7.4 GB
EGAF50000854403 bam 6.2 GB
EGAF50000854404 bam 5.7 GB
EGAF50000854405 bam 6.8 GB
EGAF50000854406 bam 7.8 GB
EGAF50000854407 bam 7.0 GB
EGAF50000854408 bam 4.9 GB
EGAF50000854409 bam 5.9 GB
EGAF50000854410 bam 4.6 GB
EGAF50000854411 bam 5.8 GB
EGAF50000854412 bam 4.7 GB
EGAF50000854413 bam 5.3 GB
EGAF50000854414 bam 6.9 GB
EGAF50000854415 bam 6.4 GB
EGAF50000854416 bam 5.7 GB
EGAF50000854417 bam 8.1 GB
EGAF50000854418 bam 7.5 GB
EGAF50000854419 bam 5.3 GB
EGAF50000854420 bam 4.0 GB
EGAF50000854421 bam 5.4 GB
EGAF50000854422 bam 6.8 GB
EGAF50000854423 bam 6.9 GB
EGAF50000854424 bam 6.8 GB
EGAF50000854425 bam 5.8 GB
EGAF50000854426 bam 5.6 GB
EGAF50000854427 bam 5.5 GB
EGAF50000854428 bam 5.2 GB
EGAF50000854429 bam 6.4 GB
EGAF50000854430 bam 5.9 GB
EGAF50000854431 bam 6.5 GB
EGAF50000854432 bam 5.1 GB
EGAF50000854433 bam 5.0 GB
EGAF50000854434 bam 6.2 GB
EGAF50000854435 bam 3.7 GB
EGAF50000854436 bam 4.5 GB
EGAF50000854437 bam 6.7 GB
EGAF50000854438 bam 5.5 GB
EGAF50000854439 bam 6.5 GB
EGAF50000854440 bam 7.1 GB
EGAF50000854441 bam 8.2 GB
EGAF50000854442 bam 5.0 GB
EGAF50000854443 bam 6.5 GB
EGAF50000854444 bam 6.5 GB
EGAF50000854445 bam 7.2 GB
EGAF50000854446 bam 7.7 GB
EGAF50000854447 bam 6.7 GB
EGAF50000854448 bam 8.2 GB
EGAF50000854449 bam 5.0 GB
EGAF50000854450 bam 9.9 GB
EGAF50000854451 bam 5.7 GB
EGAF50000854452 bam 4.8 GB
EGAF50000854453 bam 6.5 GB
EGAF50000854454 bam 5.9 GB
EGAF50000854455 bam 5.7 GB
EGAF50000854456 bam 4.3 GB
EGAF50000854457 bam 5.9 GB
EGAF50000854458 bam 5.5 GB
EGAF50000854459 bam 7.8 GB
EGAF50000854460 bam 4.9 GB
EGAF50000854461 bam 6.6 GB
EGAF50000854462 bam 6.8 GB
EGAF50000854463 bam 4.0 GB
EGAF50000854464 bam 6.0 GB
EGAF50000854465 bam 3.8 GB
EGAF50000854466 bam 5.4 GB
EGAF50000854467 bam 4.7 GB
EGAF50000854468 bam 5.1 GB
EGAF50000854469 bam 5.6 GB
EGAF50000854470 bam 6.7 GB
EGAF50000854471 bam 3.9 GB
EGAF50000854472 bam 4.3 GB
EGAF50000854473 bam 3.9 GB
EGAF50000854474 bam 4.0 GB
EGAF50000854475 bam 4.2 GB
EGAF50000854476 bam 5.3 GB
EGAF50000854477 bam 4.5 GB
EGAF50000854478 bam 5.9 GB
EGAF50000854479 bam 7.3 GB
EGAF50000854480 bam 7.8 GB
EGAF50000854481 bam 6.7 GB
EGAF50000854482 bam 6.2 GB
EGAF50000854483 bam 4.3 GB
EGAF50000854484 bam 5.2 GB
EGAF50000854485 bam 5.7 GB
EGAF50000854486 bam 6.2 GB
EGAF50000854487 bam 5.4 GB
EGAF50000854488 bam 4.2 GB
EGAF50000854489 bam 5.0 GB
EGAF50000854490 bam 6.4 GB
EGAF50000854491 bam 6.2 GB
EGAF50000854492 bam 5.1 GB
EGAF50000854493 bam 6.5 GB
EGAF50000854494 bam 5.3 GB
EGAF50000854495 bam 7.5 GB
EGAF50000854496 bam 7.2 GB
EGAF50000854497 bam 6.6 GB
EGAF50000854498 bam 5.3 GB
EGAF50000854499 bam 4.8 GB
EGAF50000854500 bam 5.2 GB
EGAF50000854501 bam 5.5 GB
EGAF50000854502 bam 5.5 GB
EGAF50000854503 bam 7.2 GB
143 Files (836.0 GB)