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snATAC-cultured

Dataset containing all donors making up the snATAC-seq cultured endocrine object

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Data Transfer Agreement - HCA - ESPACE

Data Transfer Agreement between Charité - Universitätsmedizin Berlin Charitéplatz 1, 10117 Berlin Germany –hereinafter: „CHARITÉ“ – [INSERT INSTITUTION DETAILS full legal name and address] –hereinafter: „RECIPIENT“ – – individually referred to as “PARTY” and/or together referred to as “PARTIES” – Preamble This Data Transfer Agreement governs the terms on which access will be granted to the genotype data generated by CHARITÉ. 1.Definitions “Data” means all and any human genetic data obtained by the RECIPIENT from CHARITÉ. “Data Subject” means a person, to whom Data refers and who has been informed of the purposefor which the Data is held and has given her/his consent thereto. “Intellectual Property” means (i) patents, designs, trade marks and trade names (whetherregistered or unregistered), copyright and related rights, database rights, know-how andconfidential information; (ii) all other intellectual property rights and similar or equivalent rightsanywhere in the world which currently exist or are recognised in the future; and (iii) applications,extensions and renewals in relation to any such rights. “Publications” mean, without limitation, articles published in print journals, electronic journals,reviews, books, posters and other written and verbal presentation of research. “Registered User” means a researcher (or an individual conducting research under the supervision of a researcher) that is employed by the RECIPIENT and is bound by confidentiality and non-use obligations in respect of Data and who has signed this Agreement and has received acknowledgement of its acceptance. For the avoidance of doubt, “Registered User” may also include students, visiting academics, contractors, sub-contractors or independent consultants provided that any such individual is bound by confidentiality and non-use obligations no less onerous then those binding the RECIPIENT’s employees. 2.Obligations of the RECIPIENT 2.1 Confidentiality The RECIPIENT agrees to preserve, at all times, the confidentiality of Data pertaining to identifiable Data Subjects. In particular, the RECIPIENT undertakes not to use, or attempt to use the Data to deliberately compromise or otherwise infringe the confidentiality of information on Data Subjects and their right to privacy. 2.2 Data Protection 2.2.1 The RECIPIENT agrees to use the Data solely for the approved purpose and project described in the RECIPIENT’s application (Annex 1); use of the Data for a new purpose or project will require a new application and approval. 2.2.2 Data shall not be used for commercial purposes (e.g. diagnostic services). 2.2.3 The RECIPIENT, and her/his Registered Users, shall comply with the obligations contained in the applicable German and EU data protection laws and regulations as amended from time to time. 2.2.4 The RECIPIENT agrees that before he gives any Registered User access to Data, he shall first show the Registered User a copy of this Agreement and shall inform the Registered User that he or she must comply with the obligations contained in this Agreement and sign up to the provisions of this Agreement in the form set out at the end of this Agreement (Annex 2). The RECIPIENT shall provide CHARITÉ with a copy of the Registered User’s acceptance form within ten days of the date of acceptance by the Registered User. 2.2.5 The RECIPIENT agrees not to transfer or disclose the Data, in whole or in part, or any identifiable material derived from the Data, to others, except Registered Users. Should the RECIPIENT wish to share the Data with a collaborator out of the same institution, the third party must make a separate application for access to the Data. 2.2.6 The RECIPIENT agrees that she/he, and her/his Registered Users, shall not analyse or make any use of the Data in such a way that has the potential to: (i)lead to the re-identification of any Data Subject; or (ii)compromise the anonymity of any Data Subject in any way. 2.2.7 CHARITÉ reserves the right to request and inspect data security and management documentation to ensure the adequacy of data protection measures in countries that have no national laws comparable to that pertaining in the European Economic Area (EEA). 2.3 Data Security 2.3.1 The RECIPIENT agrees that she/he shall take all reasonable security precautions to keep the Data safe, such precautions to be no less onerous than in the applicable German and EU data protection laws and regulations. 2.3.2 The RECIPIENT shall adhere to the principle of IT-Security as set forth in Annex 3 hereto. 3.Provisions of cooperation 3.1 Errors The RECIPIENT agrees to notify CHARITÉ of any errors detected in the Data without undue delay. 3.2 Reissue of data The RECIPIENT accepts that CHARITÉ will reissue Data from time to time, with suitable versioning. If Data is reissued at the request of the Data Subject and/or as he result of other ethical scrutiny, the RECIPIENT agrees to destroy all earlier versions of the Data without undue delay once he has received such information. 3.3 Intellectual property 3.3.1 The RECIPIENT recognises that nothing in this Agreement shall operate to transfer to the RECIPIENT any intellectual property rights in or relating to the Data. 3.3.2 The RECIPIENT does not have the right to sublicense the Data. The RECEPIENT shall inform CHARITÉ about any third party requests for the Data. 3.3.3 The RECIPIENT shall have the right to develop intellectual property based on comparison with their own data. 3.3.4 CHARITÉ has no knowledge of any conflicting property rights of third parties regarding the provided Data. If CHARITÉ learns of potential conflicting property rights of third parties, CHARITÉ shall inform the RECIPIENT; however, no liability can be assumed for this. 3.4 Publications 3.4.1 The RECIPIENT agrees to acknowledge in any RECIPIENT’s work based in whole or part on the Date, any provider publications which encompass and from which Data derive, the respective version of the Data obtained, and the role of CHARITÉ. The RECIPIENT is also entitled to release publications and, in doing so, agrees to acknowledge any of CHARITÉ’s work based in whole or part on the Data in its publication. 3.4.2 The RECIPIENT will also declare in any such work that CHARITÉ and its employees bear no responsibility for the further analysis or interpretation of the Data by the RECIPIENT. 3.5 Liability 3.5.1 The RECIPIENT accepts that CHARITÉ, the original data creators, depositors or copyright holders, or the funders of the Data or any part of the Data supplied: (i)bear no legal responsibility for the accuracy or comprehensiveness of the Data; and (ii)accept no liability for indirect, consequential, or incidental, damages or losses arisingfrom use of the Data, or from the unavailability of, or break in access to, the Data forwhatever reason, except for damages caused intentionally or by gross negligence. 3.5.2 Nothing in this Agreement limits or excludes either Party’s liability for (i) product liability claims, (ii) death or personal injury resulting from negligence or any fraud or (iii) or in case of breaches of so called “material contractual obligations (Kardinalpflichten)”. Material contractual obligations (Kardinalpflichten) are obligations which principally enable the fulfilment of the proper enforcement of the contract and on which the contractual partner can trust and is allowed to trust for compliance (iiii) for any sort of other liability which by law cannot be limited or excluded according to applicable law. 4.General provisions 4.1 Termination of Agreement 4.1.1 This Agreement shall expire automatically three years after its signature by both PARTIES. 4.1.2 This Agreement will terminate immediately upon any breach of the provisions of this Agreement by the RECIPIENT. 4.1.3 The RECIPIENT accepts that the changing ethical framework of human genetic research may lead to: (i)alteration to the provisions of this Agreement, in which case the RECIPIENT may accept such alterations or terminate this Agreement; or (ii) the withdrawal of this Agreement in extreme circumstances.4.1.4 The notification of either PARTY to terminate this Agreement shall be made in writing with 4 weeks’ notice. 4.1.5 In the event that this Agreement is expired or terminated in accordance with this Clause 4.1 the RECIPIENT shall destroy all Data at the direction of CHARITÉ. This shall not apply to the extent that Data is saved in automatic back-up systems for which destruction shall follow the regular process of such back-up system, however, such Data shall be eliminated within a period of 90 days after the date of termination. Upon request of CHARITÉ, the RECIPIENT will certify the destruction of the Data. 4.2 Applicable Law 4.2.1 This Agreement shall be governed, construed and interpreted in accordance with the substantive laws of Germany. This Agreement shall be in the English language and the English version of this Agreement shall be deemed the official and governing instrument, notwithstanding any translations thereof. 4.2.2 The PARTIES agree to submit to the exclusive jurisdiction of the courts of Berlin, Germany, as regards any disputes, claims or matter arising under this Agreement. Annexes Annex 1 Application for Access to Genotype Data Annex 2 Declaration of commitment Annex 3 Data Security SIGNATURES for CHARITÉ ______________________ ______________________ Place, date, Anne Großkopff, Business Director Faculty for RECIPIENT ______________________ _____________________ Place, date, [Name ... ] Annex 1 Application for Access to Genotype Data Name of RECIPIENT and registered USERS, including affiliations and contact details. Enter the primary email correspondence email address you would like to use: [...] Please ensure that a full postal and email address is included for the RECIPIENT and each registered USER. [...] Title of Project (in less than 30 words) [...] Data Request [...] Research Question Please provide a clear description of the project and its specific aims in no more than 750 words. This should include specific details of what you plan to do with the data and include key references. [...] Feasibiliy Please describe fully your experience and expertise, and that of your collaborators, and how this will be applied to the proposed study. [...] Please send completed forms to: Charité - Universitätsmedizin Berlin BIH Digital Health Center Prof. Dr. Roland Eils Kapelle-Ufer 2 10117 Berlin Germany Email: roland.eils@charite.de Annex 2 Declaration of Commitment Please send signed form to: Charité - Universitätsmedizin Berlin BIH Digital Health Center Prof. Dr. Roland Eils Kapelle-Ufer 2 10117 Berlin Germany Email: roland.eils@charite.de I, __________________________________, declare that I will comply with the requirements of the Data Transfer Agreement as agreed upon between CHARITÉ and the RECIPIENT, including but not limited to the requirements of the applicable data protection regulations. With my signature I confirm the receipt of a copy of this agreement. ______________________ ______________________ [Place, date, name] Annex 3 Principle of IT-Security An appropriate level of data protection shall be ensured through appropriate technical and organisational measures: Guarantee of confidentiality Admission control No unauthorised access to data processing equipment, e.g: magnetic or chip cards, keys, electric door openers, plant security or gatekeepers, alarm systems, video systems Access control No unauthorized system use, e.g: (secure) passwords, automatic locking mechanisms, two-factor authentication, encryption of data carriers No unauthorized reading, copying, modification or removal within the system, e.g: authorization concepts and need-based access rights, logging of accesses Guarantee of integrity Transmission control No unauthorized reading, copying, modification or removal during electronic transmission or transport, e.g: encryption, Virtual Private Networks (VPN), electronic signature Input control Determination whether and by whom personal data have been entered, modified or removed from data processing systems, e.g: logging, document management Guarantee of the availability and resilience of the system Availability control Protection against accidental or deliberate destruction or loss, e.g: Backup strategy (online/offline; on-site/off-site), uninterruptible power supply (UPS), virus protection, firewall, reporting channels and emergency plans Rapid recoverability Procedures for regular review, assessment and evaluation Data protection management Incident response management Privacy friendly default settings The implementation shall take into account the state of the art, implementation costs and the nature, scale and purposes of the processing, as well as the varying degrees of probability and seriousness of the risk to the rights and freedoms of natural persons. The technical and organisational measures are subject to technical progress and further development.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000001872 Transcriptome Sequencing

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
EGAF50000861815 fastq.gz 3.9 GB
EGAF50000861816 fastq.gz 2.1 GB
EGAF50000861817 fastq.gz 3.9 GB
EGAF50000861818 fastq.gz 3.9 GB
EGAF50000861819 fastq.gz 2.1 GB
EGAF50000861820 fastq.gz 3.9 GB
EGAF50000861907 fastq.gz 762.6 MB
EGAF50000861908 fastq.gz 1.5 GB
EGAF50000861909 fastq.gz 818.2 MB
EGAF50000861910 fastq.gz 431.7 MB
EGAF50000861911 fastq.gz 814.0 MB
EGAF50000861912 fastq.gz 2.2 GB
EGAF50000861913 fastq.gz 2.2 GB
EGAF50000861914 fastq.gz 1.2 GB
EGAF50000861915 fastq.gz 2.2 GB
EGAF50000861930 fastq.gz 3.7 GB
EGAF50000861952 fastq.gz 3.3 GB
EGAF50000861953 fastq.gz 1.8 GB
EGAF50000861954 fastq.gz 3.3 GB
EGAF50000861955 fastq.gz 2.9 GB
EGAF50000861961 fastq.gz 1.8 GB
EGAF50000861962 fastq.gz 3.4 GB
EGAF50000861963 fastq.gz 3.4 GB
EGAF50000861964 fastq.gz 2.9 GB
EGAF50000861965 fastq.gz 2.9 GB
EGAF50000861966 fastq.gz 3.2 GB
EGAF50000861967 fastq.gz 2.5 GB
EGAF50000861968 fastq.gz 737.9 MB
EGAF50000861969 fastq.gz 3.9 GB
EGAF50000861970 fastq.gz 1.9 GB
EGAF50000861971 fastq.gz 3.9 GB
EGAF50000861972 fastq.gz 1.6 GB
EGAF50000861973 fastq.gz 2.3 GB
EGAF50000861974 fastq.gz 1.2 GB
EGAF50000861975 fastq.gz 2.4 GB
EGAF50000861976 fastq.gz 2.2 GB
EGAF50000861977 fastq.gz 1.2 GB
EGAF50000861978 fastq.gz 2.2 GB
EGAF50000862680 fastq.gz 1.4 GB
EGAF50000862681 fastq.gz 1.5 GB
EGAF50000862682 fastq.gz 1.5 GB
EGAF50000862686 fastq.gz 3.6 GB
EGAF50000862687 fastq.gz 1.9 GB
EGAF50000862688 fastq.gz 3.6 GB
EGAF50000862689 fastq.gz 1.9 GB
EGAF50000862691 fastq.gz 2.5 GB
EGAF50000862692 fastq.gz 1.3 GB
EGAF50000862693 fastq.gz 2.5 GB
EGAF50000862699 fastq.gz 2.4 GB
EGAF50000862700 fastq.gz 2.4 GB
EGAF50000862701 fastq.gz 2.4 GB
EGAF50000862702 fastq.gz 1.2 GB
EGAF50000862703 fastq.gz 2.4 GB
EGAF50000862704 fastq.gz 3.0 GB
EGAF50000862705 fastq.gz 1.6 GB
EGAF50000862706 fastq.gz 3.0 GB
EGAF50000862707 fastq.gz 1.7 GB
EGAF50000862708 fastq.gz 3.2 GB
EGAF50000862709 fastq.gz 2.3 GB
EGAF50000862710 fastq.gz 3.7 GB
EGAF50000862711 fastq.gz 2.3 GB
EGAF50000862712 fastq.gz 2.4 GB
EGAF50000862713 fastq.gz 2.4 GB
EGAF50000862714 fastq.gz 2.4 GB
EGAF50000862715 fastq.gz 3.6 GB
EGAF50000862716 fastq.gz 3.6 GB
EGAF50000862717 fastq.gz 2.2 GB
EGAF50000862718 fastq.gz 2.3 GB
EGAF50000862727 fastq.gz 3.4 GB
EGAF50000862728 fastq.gz 3.8 GB
EGAF50000862729 fastq.gz 2.7 GB
EGAF50000862730 fastq.gz 2.8 GB
EGAF50000862731 fastq.gz 1.3 GB
EGAF50000862732 fastq.gz 674.5 MB
EGAF50000862733 fastq.gz 2.2 GB
EGAF50000862734 fastq.gz 1.2 GB
EGAF50000862735 fastq.gz 2.3 GB
EGAF50000862736 fastq.gz 2.3 GB
EGAF50000862737 fastq.gz 1.2 GB
EGAF50000862903 fastq.gz 2.3 GB
EGAF50000862904 fastq.gz 3.7 GB
EGAF50000862905 fastq.gz 1.8 GB
EGAF50000862906 fastq.gz 2.9 GB
EGAF50000862907 fastq.gz 1.2 GB
EGAF50000862908 fastq.gz 2.5 GB
EGAF50000862909 fastq.gz 1.6 GB
EGAF50000862910 fastq.gz 3.0 GB
EGAF50000862911 fastq.gz 3.2 GB
EGAF50000862912 fastq.gz 2.3 GB
EGAF50000862913 fastq.gz 1.2 GB
EGAF50000862914 fastq.gz 1.2 GB
EGAF50000862915 fastq.gz 3.1 GB
EGAF50000862916 fastq.gz 1.6 GB
EGAF50000862917 fastq.gz 2.8 GB
EGAF50000862918 fastq.gz 2.7 GB
EGAF50000862919 fastq.gz 1.5 GB
EGAF50000862920 fastq.gz 2.8 GB
EGAF50000862921 fastq.gz 1.7 GB
EGAF50000862922 fastq.gz 3.3 GB
EGAF50000862923 fastq.gz 2.4 GB
EGAF50000862924 fastq.gz 3.2 GB
EGAF50000862925 fastq.gz 3.1 GB
EGAF50000862926 fastq.gz 3.2 GB
EGAF50000862927 fastq.gz 1.3 GB
EGAF50000862928 fastq.gz 1.3 GB
EGAF50000862929 fastq.gz 684.3 MB
EGAF50000862930 fastq.gz 1.3 GB
EGAF50000862931 fastq.gz 1.4 GB
EGAF50000862932 fastq.gz 711.2 MB
EGAF50000862934 fastq.gz 712.2 MB
EGAF50000862935 fastq.gz 2.3 GB
EGAF50000863069 fastq.gz 1.3 GB
EGAF50000863070 fastq.gz 1.4 GB
EGAF50000863071 fastq.gz 2.3 GB
EGAF50000863072 fastq.gz 2.2 GB
EGAF50000863073 fastq.gz 2.9 GB
EGAF50000863074 fastq.gz 3.7 GB
EGAF50000863075 fastq.gz 2.4 GB
EGAF50000863076 fastq.gz 729.5 MB
EGAF50000863077 fastq.gz 698.4 MB
EGAF50000863325 fastq.gz 705.6 MB
EGAF50000863326 fastq.gz 1.4 GB
EGAF50000863327 fastq.gz 1.8 GB
EGAF50000863328 fastq.gz 907.6 MB
EGAF50000863329 fastq.gz 1.7 GB
EGAF50000863330 fastq.gz 1.8 GB
EGAF50000863331 fastq.gz 908.6 MB
EGAF50000863332 fastq.gz 1.7 GB
EGAF50000863333 fastq.gz 1.4 GB
EGAF50000863334 fastq.gz 759.8 MB
EGAF50000863335 fastq.gz 1.3 GB
EGAF50000863336 fastq.gz 699.6 MB
EGAF50000863337 fastq.gz 1.3 GB
EGAF50000863338 fastq.gz 1.3 GB
EGAF50000863339 fastq.gz 700.4 MB
EGAF50000863340 fastq.gz 1.3 GB
EGAF50000863341 fastq.gz 809.2 MB
EGAF50000863342 fastq.gz 427.9 MB
EGAF50000863343 fastq.gz 808.6 MB
EGAF50000863344 fastq.gz 1.2 GB
EGAF50000863345 fastq.gz 3.3 GB
EGAF50000863346 fastq.gz 2.8 GB
EGAF50000863347 fastq.gz 1.6 GB
EGAF50000863348 fastq.gz 2.4 GB
EGAF50000863349 fastq.gz 1.3 GB
EGAF50000863350 fastq.gz 2.4 GB
EGAF50000863351 fastq.gz 2.5 GB
EGAF50000863352 fastq.gz 1.3 GB
EGAF50000863353 fastq.gz 2.5 GB
EGAF50000863354 fastq.gz 1.3 GB
EGAF50000863355 fastq.gz 3.0 GB
EGAF50000863356 fastq.gz 2.3 GB
EGAF50000863357 fastq.gz 2.3 GB
EGAF50000863358 fastq.gz 2.3 GB
EGAF50000863359 fastq.gz 2.3 GB
EGAF50000863360 fastq.gz 1.2 GB
EGAF50000863361 fastq.gz 1.9 GB
EGAF50000863362 fastq.gz 3.6 GB
EGAF50000863363 fastq.gz 1.2 GB
EGAF50000863364 fastq.gz 2.3 GB
EGAF50000863365 fastq.gz 2.4 GB
EGAF50000863366 fastq.gz 1.3 GB
EGAF50000863367 fastq.gz 1.3 GB
EGAF50000863368 fastq.gz 1.9 GB
EGAF50000863369 fastq.gz 2.2 GB
EGAF50000863370 fastq.gz 1.2 GB
EGAF50000863371 fastq.gz 1.2 GB
EGAF50000863372 fastq.gz 2.2 GB
EGAF50000863373 fastq.gz 2.3 GB
EGAF50000863374 fastq.gz 1.2 GB
EGAF50000863375 fastq.gz 2.4 GB
EGAF50000863376 fastq.gz 1.3 GB
EGAF50000863377 fastq.gz 2.4 GB
EGAF50000863378 fastq.gz 3.1 GB
EGAF50000863379 fastq.gz 2.8 GB
EGAF50000863380 fastq.gz 1.5 GB
EGAF50000863381 fastq.gz 2.9 GB
EGAF50000863382 fastq.gz 3.4 GB
EGAF50000863383 fastq.gz 1.8 GB
EGAF50000863384 fastq.gz 2.9 GB
EGAF50000863385 fastq.gz 1.6 GB
EGAF50000863386 fastq.gz 1.6 GB
EGAF50000863387 fastq.gz 1.9 GB
EGAF50000863388 fastq.gz 3.8 GB
EGAF50000863389 fastq.gz 1.9 GB
EGAF50000863390 fastq.gz 3.7 GB
EGAF50000863391 fastq.gz 1.5 GB
EGAF50000863392 fastq.gz 2.8 GB
EGAF50000863393 fastq.gz 1.5 GB
EGAF50000863394 fastq.gz 2.8 GB
EGAF50000863395 fastq.gz 1.5 GB
EGAF50000863396 fastq.gz 2.8 GB
EGAF50000863397 fastq.gz 2.4 GB
EGAF50000863398 fastq.gz 1.3 GB
EGAF50000863399 fastq.gz 2.4 GB
EGAF50000863400 fastq.gz 2.4 GB
EGAF50000863401 fastq.gz 386.8 MB
EGAF50000863402 fastq.gz 689.6 MB
EGAF50000863403 fastq.gz 673.8 MB
EGAF50000863404 fastq.gz 386.2 MB
EGAF50000863405 fastq.gz 689.6 MB
EGAF50000863406 fastq.gz 1.7 GB
EGAF50000863407 fastq.gz 3.3 GB
EGAF50000863408 fastq.gz 3.3 GB
EGAF50000863409 fastq.gz 1.2 GB
EGAF50000863410 fastq.gz 2.4 GB
EGAF50000863411 fastq.gz 2.4 GB
EGAF50000863412 fastq.gz 1.2 GB
EGAF50000863413 fastq.gz 443.3 MB
EGAF50000863414 fastq.gz 728.0 MB
EGAF50000863415 fastq.gz 740.1 MB
EGAF50000863416 fastq.gz 443.5 MB
EGAF50000863417 fastq.gz 3.9 GB
EGAF50000863418 fastq.gz 2.0 GB
EGAF50000863419 fastq.gz 3.9 GB
EGAF50000863420 fastq.gz 2.6 GB
EGAF50000863421 fastq.gz 1.3 GB
EGAF50000863422 fastq.gz 2.6 GB
EGAF50000863423 fastq.gz 2.6 GB
EGAF50000863424 fastq.gz 1.3 GB
EGAF50000863425 fastq.gz 2.6 GB
EGAF50000863426 fastq.gz 3.1 GB
EGAF50000863427 fastq.gz 1.6 GB
EGAF50000863428 fastq.gz 2.8 GB
EGAF50000863429 fastq.gz 1.4 GB
EGAF50000863430 fastq.gz 2.7 GB
EGAF50000863431 fastq.gz 2.7 GB
EGAF50000863432 fastq.gz 1.4 GB
EGAF50000863433 fastq.gz 2.7 GB
EGAF50000863434 fastq.gz 1.3 GB
EGAF50000863435 fastq.gz 676.1 MB
EGAF50000863436 fastq.gz 1.4 GB
EGAF50000863437 fastq.gz 1.4 GB
EGAF50000863943 fastq.gz 3.3 GB
EGAF50000863944 fastq.gz 1.6 GB
EGAF50000863945 fastq.gz 2.9 GB
EGAF50000863946 fastq.gz 1.4 GB
EGAF50000863947 fastq.gz 2.3 GB
EGAF50000863948 fastq.gz 2.2 GB
EGAF50000863949 fastq.gz 1.1 GB
EGAF50000863950 fastq.gz 2.3 GB
EGAF50000863951 fastq.gz 1.1 GB
EGAF50000863952 fastq.gz 2.3 GB
243 Files (504.0 GB)