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scAmp-seq of human bone marrow samples across ERCC6L2 disease and Shwachman-Diamond syndrome

This dataset contains .FASTQ files of targeted genotyping by single-cell amplicon sequencing (scAmp-seq) data of human bone marrow samples across ERCC6L2 disease (33 amplicon libraries from 15 samples from 9 patients) and Shwachman-Diamond syndrome (6 amplicon libraries from 4 samples from 3 patients). TP53 locus-specific scAmp-seq libraries were generated using a double-nested PCR approach resulting in four PCR rounds. Locus-specific reverse primers preserving the mutation site together with generic forward primers preserving the single-cell barcoding structure were designed. The resulting files were processed using CellRanger 6.0.2 pipelines with default parameters to generate FASTQ files.

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Access application page in SD Apply for datasets EGAD50000002724 and EGAD50000002725

To obtain access to data stored in FEGA Finland, we would like to inform you that access will be granted through the local access management system SD Apply. It is important to note that applications submitted via the EGA DAC portal will not be processed. For comprehensive details regarding reuse policies and other essential documentation, please visit the access application page in SD Apply. We kindly invite you to follow the provided link (next to the policy title) and submit your access application through SD Apply. Your cooperation in this matter is greatly appreciated.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000001880 RNASeq

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
EGAF50000810928 fastq.gz 51.8 MB
EGAF50000810929 fastq.gz 52.6 MB
EGAF50000810930 fastq.gz 193.1 MB
EGAF50000810931 fastq.gz 1.3 GB
EGAF50000810932 fastq.gz 55.4 MB
EGAF50000810933 fastq.gz 56.7 MB
EGAF50000810934 fastq.gz 189.6 MB
EGAF50000810935 fastq.gz 1.3 GB
EGAF50000810936 fastq.gz 83.9 MB
EGAF50000810937 fastq.gz 81.7 MB
EGAF50000810938 fastq.gz 266.9 MB
EGAF50000810939 fastq.gz 1.8 GB
EGAF50000810950 fastq.gz 128.6 MB
EGAF50000810951 fastq.gz 130.5 MB
EGAF50000810952 fastq.gz 369.0 MB
EGAF50000810953 fastq.gz 2.6 GB
EGAF50000810958 fastq.gz 194.0 MB
EGAF50000810959 fastq.gz 194.5 MB
EGAF50000810960 fastq.gz 710.3 MB
EGAF50000810961 fastq.gz 4.7 GB
EGAF50000810962 fastq.gz 100.3 MB
EGAF50000810963 fastq.gz 101.2 MB
EGAF50000810964 fastq.gz 408.5 MB
EGAF50000810965 fastq.gz 2.2 GB
EGAF50000810966 fastq.gz 124.7 MB
EGAF50000810967 fastq.gz 125.5 MB
EGAF50000810968 fastq.gz 492.2 MB
EGAF50000810969 fastq.gz 2.5 GB
EGAF50000810970 fastq.gz 173.5 MB
EGAF50000810971 fastq.gz 174.4 MB
EGAF50000810972 fastq.gz 686.3 MB
EGAF50000810973 fastq.gz 3.5 GB
EGAF50000811189 fastq.gz 209.6 MB
EGAF50000811190 fastq.gz 209.9 MB
EGAF50000811191 fastq.gz 703.8 MB
EGAF50000811192 fastq.gz 5.0 GB
EGAF50000811193 fastq.gz 120.4 MB
EGAF50000811194 fastq.gz 121.7 MB
EGAF50000811195 fastq.gz 419.8 MB
EGAF50000811196 fastq.gz 2.7 GB
EGAF50000811197 fastq.gz 134.8 MB
EGAF50000811198 fastq.gz 135.5 MB
EGAF50000811199 fastq.gz 521.0 MB
EGAF50000811276 fastq.gz 2.7 GB
EGAF50000811277 fastq.gz 122.6 MB
EGAF50000811278 fastq.gz 124.0 MB
EGAF50000811279 fastq.gz 447.6 MB
EGAF50000811280 fastq.gz 2.2 GB
EGAF50000811487 fastq.gz 112.6 MB
EGAF50000811488 fastq.gz 110.0 MB
EGAF50000811489 fastq.gz 391.8 MB
EGAF50000811550 fastq.gz 2.7 GB
EGAF50000811551 fastq.gz 235.3 MB
EGAF50000811552 fastq.gz 231.1 MB
EGAF50000811553 fastq.gz 710.9 MB
EGAF50000811554 fastq.gz 4.8 GB
EGAF50000811555 fastq.gz 213.9 MB
EGAF50000811556 fastq.gz 211.7 MB
EGAF50000811557 fastq.gz 633.0 MB
EGAF50000811558 fastq.gz 4.9 GB
EGAF50000811559 fastq.gz 223.5 MB
EGAF50000811560 fastq.gz 220.3 MB
EGAF50000811561 fastq.gz 674.0 MB
EGAF50000811562 fastq.gz 5.4 GB
EGAF50000811567 fastq.gz 140.3 MB
EGAF50000811568 fastq.gz 141.3 MB
EGAF50000811569 fastq.gz 475.5 MB
EGAF50000811570 fastq.gz 3.5 GB
EGAF50000811571 fastq.gz 99.8 MB
EGAF50000811572 fastq.gz 101.0 MB
EGAF50000811573 fastq.gz 355.6 MB
EGAF50000811574 fastq.gz 2.0 GB
EGAF50000811575 fastq.gz 190.4 MB
EGAF50000811576 fastq.gz 193.5 MB
EGAF50000811577 fastq.gz 609.5 MB
EGAF50000811578 fastq.gz 3.3 GB
EGAF50000811579 fastq.gz 211.6 MB
EGAF50000811580 fastq.gz 216.0 MB
EGAF50000811581 fastq.gz 674.5 MB
EGAF50000811582 fastq.gz 3.6 GB
EGAF50000811587 fastq.gz 100.5 MB
EGAF50000811588 fastq.gz 101.9 MB
EGAF50000811589 fastq.gz 341.4 MB
EGAF50000811590 fastq.gz 2.0 GB
EGAF50000811591 fastq.gz 213.2 MB
EGAF50000811592 fastq.gz 215.6 MB
EGAF50000811593 fastq.gz 743.0 MB
EGAF50000811594 fastq.gz 4.5 GB
EGAF50000811611 fastq.gz 132.9 MB
EGAF50000811612 fastq.gz 130.2 MB
EGAF50000811613 fastq.gz 422.0 MB
EGAF50000811614 fastq.gz 2.2 GB
EGAF50000811619 fastq.gz 70.5 MB
EGAF50000811620 fastq.gz 71.1 MB
EGAF50000811621 fastq.gz 256.8 MB
EGAF50000811622 fastq.gz 1.3 GB
EGAF50000811639 fastq.gz 91.1 MB
EGAF50000811640 fastq.gz 88.8 MB
EGAF50000811641 fastq.gz 346.9 MB
EGAF50000811642 fastq.gz 2.0 GB
EGAF50000811643 fastq.gz 88.0 MB
EGAF50000811644 fastq.gz 85.1 MB
EGAF50000811645 fastq.gz 298.7 MB
EGAF50000811646 fastq.gz 1.7 GB
EGAF50000811647 fastq.gz 92.1 MB
EGAF50000811648 fastq.gz 89.7 MB
EGAF50000811649 fastq.gz 315.9 MB
EGAF50000811650 fastq.gz 1.8 GB
EGAF50000811667 fastq.gz 201.5 MB
EGAF50000811668 fastq.gz 198.4 MB
EGAF50000811669 fastq.gz 692.9 MB
EGAF50000811670 fastq.gz 4.7 GB
EGAF50000811671 fastq.gz 276.1 MB
EGAF50000811672 fastq.gz 272.2 MB
EGAF50000811673 fastq.gz 809.4 MB
EGAF50000811674 fastq.gz 7.7 GB
EGAF50000811675 fastq.gz 297.7 MB
EGAF50000811676 fastq.gz 294.1 MB
EGAF50000811677 fastq.gz 854.1 MB
EGAF50000811678 fastq.gz 8.2 GB
EGAF50000811695 fastq.gz 207.1 MB
EGAF50000811696 fastq.gz 203.1 MB
EGAF50000811697 fastq.gz 600.4 MB
EGAF50000811698 fastq.gz 3.0 GB
EGAF50000811703 fastq.gz 197.5 MB
EGAF50000811704 fastq.gz 200.0 MB
EGAF50000811705 fastq.gz 838.6 MB
EGAF50000811706 fastq.gz 3.9 GB
EGAF50000811707 fastq.gz 186.6 MB
EGAF50000811708 fastq.gz 189.1 MB
EGAF50000811709 fastq.gz 812.7 MB
EGAF50000811710 fastq.gz 3.9 GB
EGAF50000811759 fastq.gz 95.6 MB
EGAF50000811760 fastq.gz 93.4 MB
EGAF50000811761 fastq.gz 322.7 MB
EGAF50000811762 fastq.gz 2.3 GB
EGAF50000811779 fastq.gz 222.3 MB
EGAF50000811780 fastq.gz 219.1 MB
EGAF50000811781 fastq.gz 754.3 MB
EGAF50000811782 fastq.gz 6.2 GB
EGAF50000811783 fastq.gz 108.6 MB
EGAF50000811784 fastq.gz 106.1 MB
EGAF50000811785 fastq.gz 354.8 MB
EGAF50000811786 fastq.gz 2.0 GB
EGAF50000811787 fastq.gz 110.2 MB
EGAF50000811788 fastq.gz 107.9 MB
EGAF50000811789 fastq.gz 354.6 MB
EGAF50000811790 fastq.gz 2.0 GB
EGAF50000811795 fastq.gz 122.4 MB
EGAF50000811796 fastq.gz 118.5 MB
EGAF50000811797 fastq.gz 440.5 MB
EGAF50000811798 fastq.gz 2.8 GB
EGAF50000811803 fastq.gz 200.2 MB
EGAF50000811804 fastq.gz 196.0 MB
EGAF50000811805 fastq.gz 744.2 MB
EGAF50000811806 fastq.gz 4.4 GB
156 Files (161.2 GB)