About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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scRNAseq of tumor infiltrating CD8+ T cells

single cell mRNA sequencing of tumor infiltrating CD8+ T cells. CD8+ T cells were FACS sorted from tumor tissue obtained from 8 non-small cell lung cancer patients. Gene expression and TCR library preparation was performed using the Chromium Next GEM Single Cell 5' Kit v2, Chromium 5' Feature Barcode Kit, and Chromium Single Cell Human TCR Amplification Kit from 10x genomics. After paired-end sequencing this resulted in fastq files containing TCR sequences, gene expression, and feature barcode levels.

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Netherlands Cancer Institute - Antoni van Leeuwenhoek (NKI-AVL) general policy

Data is available under reasonable request. All data requests will be reviewed by the NKI IRB and must be supported by the Principal Investigator of the study. The researcher will need to sign a data access agreement with the NKI after approval.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000001886 RNASeq

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000895912 fastq.gz 16.0 GB
EGAF50000895913 fastq.gz 900.8 MB
EGAF50000895914 fastq.gz 1.8 GB
EGAF50000895915 fastq.gz 1.7 GB
EGAF50000895916 fastq.gz 4.0 GB
EGAF50000895917 fastq.gz 6.2 GB
EGAF50000895918 fastq.gz 42.3 GB
EGAF50000895919 fastq.gz 15.0 GB
EGAF50000895920 fastq.gz 988.1 MB
EGAF50000895921 fastq.gz 2.0 GB
EGAF50000895922 fastq.gz 2.4 GB
EGAF50000895923 fastq.gz 4.7 GB
EGAF50000895924 fastq.gz 1.6 GB
EGAF50000895925 fastq.gz 3.6 GB
EGAF50000895926 fastq.gz 2.9 GB
EGAF50000895927 fastq.gz 6.1 GB
EGAF50000895960 Rds 3.1 GB
EGAF50000895961 fastq.gz 1.2 GB
EGAF50000895962 fastq.gz 1.2 GB
EGAF50000895963 fastq.gz 2.5 GB
EGAF50000895964 fastq.gz 1.8 GB
EGAF50000895965 fastq.gz 2.5 GB
EGAF50000895966 fastq.gz 2.4 GB
EGAF50000895967 fastq.gz 4.5 GB
EGAF50000895968 fastq.gz 5.9 GB
EGAF50000895969 fastq.gz 5.7 GB
EGAF50000895970 fastq.gz 6.2 GB
EGAF50000895971 fastq.gz 14.8 GB
EGAF50000895972 fastq.gz 16.2 GB
EGAF50000895973 fastq.gz 13.6 GB
EGAF50000895974 fastq.gz 32.9 GB
31 Files (226.9 GB)