About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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Bulk RNAseq of cancer-associated CD8 T cell populations

Bulk mRNA sequencing of cancer-associated CD8 T cell populations isolated from tumor and tumor-adjacent tissue from non-small cell lung cancer patients. CD8 T cell populations isolated were CD103+CD39- and CD103+CD39+ from tumor tissue, and CD103+CD39- from adjacent tissue. These populations were isolated from 5 patients, totaling 15 samples. bulk poly-A RNA was isolated and libraries were prepped using the Smart-Seq2 protocol, followed by paired-end sequencing (Illumina). Raw data are in fastq format.

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Netherlands Cancer Institute - Antoni van Leeuwenhoek (NKI-AVL) general policy

Data is available under reasonable request. All data requests will be reviewed by the NKI IRB and must be supported by the Principal Investigator of the study. The researcher will need to sign a data access agreement with the NKI after approval.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000001886 RNASeq

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000895928 fastq.gz 1.2 GB
EGAF50000895929 fastq.gz 1.3 GB
EGAF50000895930 fastq.gz 1.2 GB
EGAF50000895931 fastq.gz 1.1 GB
EGAF50000895932 fastq.gz 1.2 GB
EGAF50000895933 fastq.gz 1.2 GB
EGAF50000895934 fastq.gz 1.3 GB
EGAF50000895935 fastq.gz 1.0 GB
EGAF50000895936 fastq.gz 1.4 GB
EGAF50000895937 fastq.gz 1.0 GB
EGAF50000895938 fastq.gz 1.0 GB
EGAF50000895939 fastq.gz 1.0 GB
EGAF50000895940 fastq.gz 1.3 GB
EGAF50000895941 fastq.gz 1.1 GB
EGAF50000895942 fastq.gz 1.3 GB
EGAF50000895943 fastq.gz 1.2 GB
EGAF50000895944 fastq.gz 1.3 GB
EGAF50000895945 fastq.gz 1.3 GB
EGAF50000895946 fastq.gz 1.3 GB
EGAF50000895947 fastq.gz 1.3 GB
EGAF50000895948 fastq.gz 980.1 MB
EGAF50000895949 fastq.gz 1.0 GB
EGAF50000895950 fastq.gz 1.4 GB
EGAF50000895951 fastq.gz 1.4 GB
EGAF50000895952 fastq.gz 982.2 MB
EGAF50000895953 fastq.gz 946.5 MB
EGAF50000895954 fastq.gz 1.0 GB
EGAF50000895955 fastq.gz 1.1 GB
EGAF50000895956 fastq.gz 929.6 MB
EGAF50000895957 fastq.gz 888.0 MB
EGAF50000895958 tsv 17.8 MB
EGAF50000895959 csv 5.4 MB
32 Files (34.7 GB)